Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2452fe3f by Andreas Tille at 2022-04-05T13:42:21+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,77 +1,79 @@
-Last-Update: Tue, 05 Apr 2022 01:42:03 +0000
+Last-Update: Tue, 05 Apr 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 174 | {imaging,covid-19} |
- orthanc | 90 | {imaging,covid-19,practice} |
+ dcmtk | 177 | {imaging,covid-19} |
+ orthanc | 91 | {imaging,covid-19,practice} |
orthanc-wsi | 43 | {laboratory,practice,imaging,covid-19,oncology,his} |
dicomscope | 26 | {imaging} |
amide | 25 | {imaging} |
dicom3tools | 24 | {imaging} |
dcm2niix | 21 | {imaging} |
- orthanc-webviewer | 13 | {imaging} |
+ orthanc-webviewer | 14 | {imaging} |
gnumed-server | 11 | {practice,covid-19} |
- openslide | 11 | {imaging-dev} |
mrtrix3 | 10 | {imaging} |
+ openslide | 10 | {imaging-dev} |
dicomnifti | 9 | {imaging} |
+ gdcm | 8 | {imaging-dev} |
libminc | 8 | {imaging-dev} |
openslide | 8 | {imaging} |
biojava-live | 7 | {bio-dev} |
- gdcm | 7 | {imaging-dev} |
gdcm | 7 | {imaging,covid-19} |
pixelmed | 7 | {imaging} |
invesalius | 6 | {imaging} |
librg-utils-perl | 6 | {bio} |
minc-tools | 6 | {imaging} |
+ nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
+ obitools | 6 | {bio} |
salmon | 6 | {bio,covid-19} |
- nifti2dicom | 5 | {imaging} |
+ treeview | 6 | {bio,bio-phylogeny} |
nipype | 5 | {imaging,imaging-dev} |
- obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
+ orthanc-postgresql | 5 | {imaging} |
oscar | 5 | {data,practice,tools} |
- treeview | 5 | {bio,bio-phylogeny} |
bio-tradis | 4 | {bio-dev,bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
+ ghmm | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
+ nifti2dicom | 4 | {imaging} |
nifticlib | 4 | {imaging} |
- orthanc-postgresql | 4 | {imaging} |
+ orthanc-mysql | 4 | {imaging} |
python-wdlparse | 4 | {bio-dev} |
adun.app | 3 | {bio} |
+ bitseq | 3 | {bio} |
blimps | 3 | {bio} |
canu | 3 | {bio} |
clonalorigin | 3 | {bio} |
dicompyler | 3 | {oncology} |
- embassy-domsearch | 3 | {cloud,bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
king | 3 | {imaging,typesetting} |
+ lamarc | 3 | {bio} |
libncl | 3 | {bio} |
mauve-aligner | 3 | {bio} |
melting | 3 | {bio,cloud} |
mia | 3 | {imaging} |
- nifti2dicom | 3 | {imaging} |
orthanc-gdcm | 3 | {imaging} |
- orthanc-mysql | 3 | {imaging} |
phyutility | 3 | {cloud,bio} |
rambo-k | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
sift | 3 | {bio} |
+ staden | 3 | {bio} |
anfo | 2 | {bio,cloud} |
arden | 2 | {bio,cloud} |
- atropos | 2 | {bio} |
bart-view | 2 | {imaging} |
beast-mcmc | 2 | {bio,bio-phylogeny} |
- bitseq | 2 | {bio} |
+ biomaj3-cli | 2 | {cloud} |
brig | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
clonalframeml | 2 | {bio,covid-19} |
delly | 2 | {covid-19,bio} |
- embassy-domainatrix | 2 | {bio,cloud} |
embassy-domalign | 2 | {cloud,bio} |
fastml | 2 | {bio} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
- lamarc | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
libgenome | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
@@ -88,16 +90,13 @@ Last-Update: Tue, 05 Apr 2022 01:42:03 +0000
pymia | 2 | {imaging-dev} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
runcircos-gui | 2 | {bio} |
saint | 2 | {bio} |
sibsim4 | 2 | {cloud,bio} |
spread-phy | 2 | {bio-phylogeny,bio} |
stacks | 2 | {bio} |
- staden | 2 | {bio} |
zalign | 2 | {cloud,bio} |
assemblytics | 1 | {bio} |
- biomaj3-cli | 1 | {cloud} |
cmtk | 1 | {imaging} |
cutesv | 1 | {bio} |
dextractor | 1 | {covid-19,bio} |
@@ -182,8 +181,8 @@ Last-Update: Tue, 05 Apr 2022 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -199,5 +198,5 @@ Last-Update: Tue, 05 Apr 2022 01:42:03 +0000
libmaus2 | -1 | {bio-dev,covid-19} |
mssstest | -1 | {tools} |
rockhopper | -1 | {bio} |
-(227 rows)
+(226 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,81 +1,83 @@
-Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
+Last-Update: Tue, 05 Apr 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3073 | {viewing} |
- sympy | 1927 | {physics,nanoscale-physics} |
- suitesparse | 246 | {mathematics-dev,numericalcomputation} |
- spyder | 225 | {numericalcomputation} |
- armadillo | 204 | {mathematics-dev} |
- python-pyqtgraph | 146 | {viewing} |
- atlas | 93 | {mathematics-dev} |
- arpack | 55 | {mathematics-dev} |
+ gts | 3062 | {viewing} |
+ sympy | 1939 | {physics,nanoscale-physics} |
+ suitesparse | 249 | {mathematics-dev,numericalcomputation} |
+ spyder | 227 | {numericalcomputation} |
+ armadillo | 203 | {mathematics-dev} |
+ python-pyqtgraph | 150 | {viewing} |
+ atlas | 94 | {mathematics-dev} |
+ arpack | 58 | {mathematics-dev} |
arduino-mk | 54 | {robotics} |
- cypari2 | 53 | {mathematics-dev} |
- imview | 43 | {viewing} |
+ cypari2 | 54 | {mathematics-dev} |
+ imview | 46 | {viewing} |
pyzo | 42 | {numericalcomputation} |
- rubiks | 39 | {geometry,mathematics} |
+ rubiks | 41 | {geometry,mathematics} |
+ eclib | 36 | {mathematics} |
+ flintqs | 36 | {mathematics} |
fftw | 35 | {physics-dev,meteorology-dev,mathematics-dev} |
- eclib | 34 | {mathematics} |
- flintqs | 34 | {mathematics} |
- sketch | 26 | {typesetting} |
+ sketch | 28 | {typesetting} |
+ nltk | 26 | {linguistics} |
cernlib | 25 | {highenergy-physics} |
bossa | 21 | {devices} |
- nltk | 21 | {linguistics} |
feedgnuplot | 20 | {viewing} |
geg | 19 | {viewing} |
+ gts | 19 | {viewing-dev} |
guidata | 19 | {dataacquisition-dev} |
cernlib | 18 | {highenergy-physics-dev} |
- gts | 18 | {viewing-dev} |
guiqwt | 18 | {numericalcomputation,viewing} |
neuron | 17 | {neuroscience-modeling,highenergy-physics,simulations} |
vitables | 17 | {numericalcomputation} |
coinor-symphony | 16 | {numericalcomputation,logic,mathematics} |
fftw | 16 | {meteorology-dev,physics-dev,mathematics-dev} |
+ gfsview | 15 | {viewing} |
mathgl | 15 | {viewing} |
opencascade | 15 | {simulations} |
- gfsview | 14 | {viewing} |
- libmatio | 14 | {mathematics-dev} |
+ ntl | 14 | {mathematics-dev} |
ppl | 14 | {numericalcomputation} |
form | 13 | {mathematics} |
- ntl | 13 | {mathematics-dev} |
+ libmatio | 13 | {mathematics-dev} |
+ auto-07p | 12 | {mathematics} |
opticalraytracer | 12 | {physics} |
- auto-07p | 11 | {mathematics} |
rheolef | 11 | {mathematics} |
ros-ros-environment | 11 | {robotics-dev} |
+ scalapack | 11 | {nanoscale-physics-dev} |
tango | 11 | {dataacquisition} |
+ debian-science | 10 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
flann | 10 | {mathematics-dev,engineering-dev} |
matlab-support | 10 | {mathematics,numericalcomputation} |
neuron | 10 | {highenergy-physics-dev} |
picosat | 10 | {logic} |
- scalapack | 10 | {nanoscale-physics-dev} |
toulbar2 | 10 | {logic,physics,mathematics,numericalcomputation} |
- debian-science | 9 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
+ debian-science | 9 | {nanoscale-physics,machine-learning,physics,economics} |
+ debian-science | 9 | {neuroscience-cognitive,machine-learning} |
libitpp | 9 | {engineering-dev,mathematics-dev} |
+ libm4ri | 9 | {mathematics-dev} |
+ psurface | 9 | {numericalcomputation} |
ros-rosconsole | 9 | {robotics-dev} |
apophenia | 8 | {statistics} |
- debian-science | 8 | {nanoscale-physics,machine-learning,physics,economics} |
+ astk | 8 | {engineering} |
getdp | 8 | {engineering,mathematics,simulations} |
- libm4ri | 8 | {mathematics-dev} |
libvigraimpex | 8 | {machine-learning,imageanalysis-dev} |
polylib | 8 | {mathematics} |
- psurface | 8 | {numericalcomputation} |
uctodata | 8 | {linguistics} |
- astk | 7 | {engineering} |
coinmp | 7 | {logic,mathematics-dev,numericalcomputation} |
debian-science | 7 | {physics,nanoscale-physics,statistics,economics} |
- debian-science | 7 | {neuroscience-cognitive,machine-learning} |
dune-uggrid | 7 | {mathematics-dev} |
+ ipe-tools | 7 | {typesetting} |
+ jeuclid | 7 | {typesetting,viewing} |
+ libcgns | 7 | {engineering} |
syrthes | 7 | {engineering} |
tango | 7 | {dataacquisition} |
ucto | 7 | {linguistics} |
urdfdom-headers | 7 | {robotics-dev} |
alberta | 6 | {engineering-dev} |
cernlib | 6 | {highenergy-physics} |
+ code-saturne | 6 | {engineering-dev,mathematics-dev} |
dxsamples | 6 | {nanoscale-physics} |
etsf-io | 6 | {nanoscale-physics,physics} |
- ipe-tools | 6 | {typesetting} |
- libcgns | 6 | {engineering} |
libmatheval | 6 | {mathematics} |
lrcalc | 6 | {mathematics} |
pcl | 6 | {robotics-dev} |
@@ -84,10 +86,9 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
cernlib | 5 | {highenergy-physics} |
cimg | 5 | {imageanalysis-dev} | {x11::library}
cliquer | 5 | {mathematics} |
- code-saturne | 5 | {engineering-dev,mathematics-dev} |
+ debian-science | 5 | {electrophysiology} |
dune-istl | 5 | {mathematics-dev} |
eclib | 5 | {mathematics-dev} |
- jeuclid | 5 | {typesetting,viewing} |
lxi-tools | 5 | {engineering,dataacquisition} |
muparser | 5 | {mathematics-dev} |
opencascade | 5 | {simulations} |
@@ -96,18 +97,17 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
taurus | 5 | {dataacquisition} |
cernlib | 4 | {highenergy-physics} |
coda | 4 | {meteorology} |
- debian-science | 4 | {electrophysiology} |
+ coda | 4 | {meteorology-dev} |
+ debian-science | 4 | {tools} |
dxflib | 4 | {engineering-dev} |
- hpcc | 4 | {distributedcomputing,numericalcomputation} |
ipe-tools | 4 | {typesetting} |
libgetdata | 4 | {dataacquisition} |
openstereogram | 4 | {tools} |
optlang | 4 | {mathematics-dev} |
- coda | 3 | {meteorology-dev} |
- debian-science | 3 | {psychophysics} |
debian-science | 3 | {physics} |
- debian-science | 3 | {tools} |
+ debian-science | 3 | {psychophysics} |
gf2x | 3 | {mathematics-dev} |
+ hpcc | 3 | {distributedcomputing,numericalcomputation} |
iml | 3 | {mathematics-dev} |
libbraiding | 3 | {mathematics-dev} |
libcgns | 3 | {engineering-dev} |
@@ -118,6 +118,7 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
libzn-poly | 3 | {mathematics-dev} |
lrcalc | 3 | {mathematics-dev} |
morse-simulator | 3 | {robotics} |
+ mrmpi | 3 | {tools} |
openmx | 3 | {nanoscale-physics,physics} |
qwtplot3d | 3 | {viewing-dev} |
ratpoints | 3 | {mathematics-dev} |
@@ -127,7 +128,6 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
apophenia | 2 | {statistics} |
asl | 2 | {physics-dev} |
cbflib | 2 | {nanoscale-physics} |
- cbflib | 2 | {nanoscale-physics-dev} |
cernlib | 2 | {highenergy-physics} |
clipper | 2 | {nanoscale-physics-dev} |
cliquer | 2 | {mathematics-dev} |
@@ -139,8 +139,8 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
fastjet | 2 | {highenergy-physics-dev} |
frog | 2 | {linguistics} |
irstlm | 2 | {linguistics} |
- jhdf | 2 | {engineering} |
jhdf | 2 | {engineering-dev} |
+ jhdf | 2 | {engineering} |
libccp4 | 2 | {nanoscale-physics-dev} |
libgetdata | 2 | {dataacquisition-dev} |
libgtkdatabox | 2 | {engineering-dev,viewing-dev} |
@@ -148,7 +148,6 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
looptools | 2 | {highenergy-physics} |
mbt | 2 | {linguistics} |
mbtserver | 2 | {linguistics} |
- mrmpi | 2 | {tools} |
newmat | 2 | {mathematics-dev} |
ompl | 2 | {robotics-dev} |
openctm | 2 | {physics-dev} |
@@ -160,12 +159,13 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
timblserver | 2 | {linguistics} |
x13as | 2 | {economics} |
apriltag | 1 | {robotics-dev} |
+ cbflib | 1 | {nanoscale-physics-dev} |
cld2 | 1 | {linguistics} |
collada-dom | 1 | {viewing-dev} |
cqrlib | 1 | {mathematics-dev} |
cvector | 1 | {mathematics-dev} |
- debian-science | 1 | {nanoscale-physics-dev} |
debian-science | 1 | {neuroscience-cognitive} |
+ debian-science | 1 | {nanoscale-physics-dev} |
dune-functions | 1 | {mathematics-dev} |
dune-typetree | 1 | {mathematics-dev} |
frogdata | 1 | {linguistics} |
@@ -224,9 +224,9 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
+ cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics-dev} |
- cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
@@ -245,15 +245,15 @@ Last-Update: Tue, 05 Apr 2022 01:42:04 +0000
libxsmm | 0 | {mathematics-dev} |
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
- metis-edf | 0 | {numericalcomputation,engineering} |
metis-edf | 0 | {engineering-dev} |
+ metis-edf | 0 | {numericalcomputation,engineering} |
ompl | 0 | {robotics} |
- openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
openturns | 0 | {statistics,meteorology-dev,mathematics-dev,mathematics,engineering,meteorology} |
+ openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
python-escript | 0 | {engineering,simulations,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
- ros-metapackages | 0 | {robotics} |
ros-metapackages | 0 | {robotics-dev} |
+ ros-metapackages | 0 | {robotics} |
ros-opencv-apps | 0 | {robotics} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2452fe3fc902b8fd236f4a29d252c4f269b934d0
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