Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
9825fd57 by Andreas Tille at 2022-04-30T13:42:22+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,100 +1,96 @@
-Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
+Last-Update: Sat, 30 Apr 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {imaging,covid-19} |
- orthanc | 100 | {imaging,covid-19,practice} |
+ dcmtk | 174 | {imaging,covid-19} |
+ orthanc | 101 | {imaging,covid-19,practice} |
orthanc-wsi | 52 | {laboratory,practice,imaging,covid-19,oncology,his} |
amide | 23 | {imaging} |
dicom3tools | 23 | {imaging} |
- dcm2niix | 22 | {imaging} |
+ dcm2niix | 21 | {imaging} |
dicomscope | 20 | {imaging} |
orthanc-webviewer | 19 | {imaging} |
+ orthanc-dicomweb | 13 | {covid-19,imaging} |
mrtrix3 | 12 | {imaging} |
- orthanc-dicomweb | 12 | {covid-19,imaging} |
gnumed-server | 11 | {practice,covid-19} |
invesalius | 11 | {imaging} |
minc-tools | 11 | {imaging} |
nipype | 11 | {imaging,imaging-dev} |
- orthanc-postgresql | 11 | {imaging} |
gdcm | 10 | {imaging-dev} |
+ orthanc-postgresql | 10 | {imaging} |
dicomnifti | 9 | {imaging} |
openslide | 9 | {imaging-dev} |
orthanc-mysql | 9 | {imaging} |
- treeview | 9 | {bio,bio-phylogeny} |
- biojava-live | 8 | {bio-dev} |
+ oscar | 9 | {data,practice,tools} |
+ dicompyler | 8 | {oncology} |
gdcm | 8 | {imaging,covid-19} |
mia | 8 | {imaging} |
nifti2dicom | 8 | {imaging} |
- oscar | 8 | {data,practice,tools} |
pixelmed | 8 | {imaging} |
- dicompyler | 7 | {oncology} |
- jebl2 | 7 | {bio-dev} |
- libncl | 7 | {bio} |
+ treeview | 8 | {bio,bio-phylogeny} |
+ biojava-live | 7 | {bio-dev} |
librg-utils-perl | 7 | {bio} |
nifti2dicom | 7 | {imaging} |
obitools | 7 | {bio} |
orthanc-gdcm | 7 | {imaging} |
plastimatch | 7 | {imaging} |
- runcircos-gui | 7 | {bio} |
- canu | 6 | {bio} |
- embassy-domsearch | 6 | {cloud,bio} |
getdata | 6 | {bio} |
- ghmm | 6 | {bio} |
- lamarc | 6 | {bio} |
+ jebl2 | 6 | {bio-dev} |
+ libncl | 6 | {bio} |
openslide | 6 | {imaging} |
- saint | 6 | {bio} |
- salmon | 6 | {bio,covid-19} |
+ runcircos-gui | 6 | {bio} |
stacks | 6 | {bio} |
adun.app | 5 | {bio} |
- bio-tradis | 5 | {bio-dev,bio} |
- bitseq | 5 | {bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
- ipig | 5 | {bio} |
- mauve-aligner | 5 | {bio} |
- melting | 5 | {bio,cloud} |
- mhap | 5 | {bio-ngs,bio} |
+ canu | 5 | {bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ ghmm | 5 | {bio} |
+ lamarc | 5 | {bio} |
nifticlib | 5 | {imaging} |
- phyutility | 5 | {cloud,bio} |
- piler | 5 | {bio} |
- rtax | 5 | {cloud,bio} |
+ saint | 5 | {bio} |
+ salmon | 5 | {bio,covid-19} |
staden | 5 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
+ bio-tradis | 4 | {bio-dev,bio} |
+ bitseq | 4 | {bio} |
blimps | 4 | {bio} |
- brig | 4 | {bio} |
- clonalframeml | 4 | {bio,covid-19} |
- clonalorigin | 4 | {bio} |
cmtk | 4 | {imaging} |
- delly | 4 | {covid-19,bio} |
- embassy-domalign | 4 | {cloud,bio} |
- fastml | 4 | {bio} |
- gatb-core | 4 | {bio} |
- hinge | 4 | {bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
+ ipig | 4 | {bio} |
king | 4 | {imaging,typesetting} |
libminc | 4 | {imaging-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- metaphlan2 | 4 | {bio} |
- placnet | 4 | {bio} |
- plasmidseeker | 4 | {bio} |
- proalign | 4 | {bio,bio-phylogeny} |
- rdp-classifier | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
+ melting | 4 | {bio,cloud} |
+ mhap | 4 | {bio-ngs,bio} |
+ phyutility | 4 | {cloud,bio} |
+ piler | 4 | {bio} |
+ rtax | 4 | {cloud,bio} |
sift | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
anfo | 3 | {bio,cloud} |
arden | 3 | {bio,cloud} |
- biomaj3-cli | 3 | {cloud} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
+ brig | 3 | {bio} |
cat-bat | 3 | {covid-19,bio} |
+ clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
dextractor | 3 | {covid-19,bio} |
elastix | 3 | {imaging} |
+ embassy-domalign | 3 | {cloud,bio} |
+ fastml | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ hinge | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- microbegps | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
orthanc-python | 3 | {covid-19} |
+ placnet | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
- rambo-k | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
sga | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
soapaligner | 3 | {bio} |
@@ -107,12 +103,14 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
zalign | 3 | {cloud,bio} |
assemblytics | 2 | {bio} |
bart-view | 2 | {imaging} |
+ biomaj3-cli | 2 | {cloud} |
cufflinks | 2 | {bio,cloud} |
emboss-explorer | 2 | {bio} |
emmax | 2 | {bio} |
kmerresistance | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libdivsufsort | 2 | {bio-dev} |
+ microbegps | 2 | {bio} |
nifticlib | 2 | {imaging-dev} |
opencfu | 2 | {laboratory} |
pigx-rnaseq | 2 | {covid-19,bio} |
@@ -120,6 +118,8 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
plasmidid | 2 | {covid-19,bio} |
pplacer | 2 | {covid-19,bio-phylogeny,bio} |
pymia | 2 | {imaging-dev} |
+ rambo-k | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
skesa | 2 | {bio} |
thesias | 2 | {bio,covid-19} |
tophat-recondition | 2 | {covid-19,bio} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,130 +1,130 @@
-Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
+Last-Update: Sat, 30 Apr 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3062 | {viewing} |
- sympy | 1692 | {physics,nanoscale-physics} |
- suitesparse | 259 | {mathematics-dev,numericalcomputation} |
- armadillo | 212 | {mathematics-dev} |
- python-pyqtgraph | 140 | {viewing} |
- atlas | 90 | {mathematics-dev} |
+ gts | 3075 | {viewing} |
+ sympy | 1699 | {physics,nanoscale-physics} |
+ suitesparse | 253 | {mathematics-dev,numericalcomputation} |
+ armadillo | 214 | {mathematics-dev} |
+ python-pyqtgraph | 139 | {viewing} |
+ atlas | 91 | {mathematics-dev} |
nltk | 82 | {linguistics} |
arpack | 58 | {mathematics-dev} |
cypari2 | 54 | {mathematics-dev} |
- imview | 50 | {viewing} |
- arduino-mk | 43 | {robotics} |
- pyzo | 42 | {numericalcomputation} |
- rubiks | 40 | {geometry,mathematics} |
- fftw | 36 | {mathematics-dev,meteorology-dev,physics-dev} |
- flintqs | 33 | {mathematics} |
- eclib | 31 | {mathematics} |
- feedgnuplot | 24 | {viewing} |
- scalapack | 23 | {nanoscale-physics-dev} |
- sketch | 23 | {typesetting} |
- vitables | 22 | {numericalcomputation} |
- geg | 21 | {viewing} |
+ imview | 49 | {viewing} |
+ arduino-mk | 44 | {robotics} |
+ rubiks | 38 | {geometry,mathematics} |
+ pyzo | 37 | {numericalcomputation} |
+ fftw | 35 | {mathematics-dev,meteorology-dev,physics-dev} |
+ flintqs | 32 | {mathematics} |
+ eclib | 30 | {mathematics} |
+ feedgnuplot | 23 | {viewing} |
+ scalapack | 22 | {nanoscale-physics-dev} |
guidata | 21 | {dataacquisition-dev} |
guiqwt | 21 | {numericalcomputation,viewing} |
+ sketch | 21 | {typesetting} |
+ vitables | 21 | {numericalcomputation} |
+ geg | 20 | {viewing} |
+ bossa | 19 | {devices} |
gts | 19 | {viewing-dev} |
- neuron | 19 | {neuroscience-modeling,highenergy-physics,simulations} |
- bossa | 17 | {devices} |
- cernlib | 17 | {highenergy-physics} |
- coinor-symphony | 17 | {mathematics,logic,numericalcomputation} |
+ neuron | 18 | {neuroscience-modeling,highenergy-physics,simulations} |
gfsview | 17 | {viewing} |
- auto-07p | 16 | {mathematics} |
+ cernlib | 16 | {highenergy-physics} |
+ coinor-symphony | 16 | {mathematics,logic,numericalcomputation} |
fftw | 16 | {mathematics-dev,meteorology-dev,physics-dev} |
ntl | 16 | {mathematics-dev} |
- form | 15 | {mathematics} |
libmatio | 15 | {mathematics-dev} |
- mathgl | 15 | {viewing} |
- picosat | 15 | {logic} |
- opencascade | 14 | {simulations} |
+ form | 14 | {mathematics} |
+ mathgl | 14 | {viewing} |
+ picosat | 14 | {logic} |
ppl | 14 | {numericalcomputation} |
ros-ros-environment | 14 | {robotics-dev} |
- flann | 13 | {mathematics-dev,engineering-dev} |
- ros-rosconsole | 13 | {robotics-dev} |
- apophenia | 12 | {statistics} |
- cernlib | 12 | {highenergy-physics-dev} |
- debian-science | 12 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
- getdp | 12 | {engineering,simulations,mathematics} |
+ auto-07p | 13 | {mathematics} |
+ cernlib | 13 | {highenergy-physics-dev} |
+ opencascade | 13 | {simulations} |
+ flann | 12 | {mathematics-dev,engineering-dev} |
libm4ri | 12 | {mathematics-dev} |
matlab-support | 12 | {mathematics,numericalcomputation} |
neuron | 12 | {highenergy-physics-dev} |
- opticalraytracer | 12 | {physics} |
+ ros-rosconsole | 12 | {robotics-dev} |
tango | 12 | {dataacquisition} |
- toulbar2 | 12 | {mathematics,numericalcomputation,logic,physics} |
- uctodata | 12 | {linguistics} |
- debian-science | 11 | {nanoscale-physics,economics,physics,machine-learning} |
- polylib | 11 | {mathematics} |
+ apophenia | 11 | {statistics} |
+ debian-science | 11 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
+ getdp | 11 | {engineering,simulations,mathematics} |
+ opticalraytracer | 11 | {physics} |
rheolef | 11 | {mathematics} |
- ucto | 11 | {linguistics} |
- debian-science | 10 | {physics,nanoscale-physics,economics,statistics} |
- jeuclid | 10 | {viewing,typesetting} |
- libcgns | 10 | {engineering} |
- psurface | 10 | {numericalcomputation} |
+ toulbar2 | 11 | {mathematics,numericalcomputation,logic,physics} |
+ uctodata | 11 | {linguistics} |
+ debian-science | 10 | {nanoscale-physics,economics,physics,machine-learning} |
+ polylib | 10 | {mathematics} |
teem | 10 | {imageanalysis} |
+ ucto | 10 | {linguistics} |
+ debian-science | 9 | {physics,nanoscale-physics,economics,statistics} |
+ jeuclid | 9 | {viewing,typesetting} |
+ libcgns | 9 | {engineering} |
lxi-tools | 9 | {engineering,dataacquisition} |
- pcl | 9 | {robotics-dev} |
+ psurface | 9 | {numericalcomputation} |
tango | 9 | {dataacquisition} |
- astk | 8 | {engineering} |
- code-saturne | 8 | {mathematics-dev,engineering-dev} |
- debian-science | 8 | {machine-learning,neuroscience-cognitive} |
- ipe-tools | 8 | {typesetting} |
libitpp | 8 | {mathematics-dev,engineering-dev} |
- lrcalc | 8 | {mathematics} |
- scram | 8 | {engineering} |
- syrthes | 8 | {engineering} |
- debian-science | 7 | {electrophysiology} |
- etsf-io | 7 | {nanoscale-physics,physics} |
- frog | 7 | {linguistics} |
+ pcl | 8 | {robotics-dev} |
+ astk | 7 | {engineering} |
+ code-saturne | 7 | {mathematics-dev,engineering-dev} |
+ debian-science | 7 | {machine-learning,neuroscience-cognitive} |
+ ipe-tools | 7 | {typesetting} |
+ lrcalc | 7 | {mathematics} |
python-escript | 7 | {numericalcomputation,engineering,simulations} |
+ scram | 7 | {engineering} |
+ syrthes | 7 | {engineering} |
cimg | 6 | {imageanalysis-dev} | {x11::library}
cliquer | 6 | {mathematics} |
- dimbl | 6 | {linguistics} |
+ debian-science | 6 | {electrophysiology} |
dune-istl | 6 | {mathematics-dev} |
dune-uggrid | 6 | {mathematics-dev} |
dxsamples | 6 | {nanoscale-physics} |
- irstlm | 6 | {linguistics} |
- libgetdata | 6 | {dataacquisition} |
+ etsf-io | 6 | {nanoscale-physics,physics} |
+ frog | 6 | {linguistics} |
libvigraimpex | 6 | {imageanalysis-dev,machine-learning} |
- mbt | 6 | {linguistics} |
- muparser | 6 | {mathematics-dev} |
opencascade | 6 | {simulations} |
- sac2mseed | 6 | {geography} |
- timbl | 6 | {linguistics} |
alberta | 5 | {engineering-dev} |
- cbflib | 5 | {nanoscale-physics} |
debian-science | 5 | {tools} |
+ dimbl | 5 | {linguistics} |
eclib | 5 | {mathematics-dev} |
+ irstlm | 5 | {linguistics} |
+ libgetdata | 5 | {dataacquisition} |
libm4rie | 5 | {mathematics-dev} |
libmatheval | 5 | {mathematics} |
libzn-poly | 5 | {mathematics-dev} |
- mbtserver | 5 | {linguistics} |
+ mbt | 5 | {linguistics} |
morse-simulator | 5 | {robotics} |
+ muparser | 5 | {mathematics-dev} |
neuron | 5 | {highenergy-physics-dev} |
- openmx | 5 | {physics,nanoscale-physics} |
+ sac2mseed | 5 | {geography} |
simbody | 5 | {robotics-dev} |
- timblserver | 5 | {linguistics} |
- x13as | 5 | {economics} |
+ timbl | 5 | {linguistics} |
apertium-streamparser | 4 | {linguistics} |
- cernlib | 4 | {highenergy-physics} |
+ cbflib | 4 | {nanoscale-physics} |
clhep | 4 | {highenergy-physics-dev} |
cliquer | 4 | {mathematics-dev} |
coda | 4 | {meteorology-dev} |
- coda | 4 | {meteorology} |
coinmp | 4 | {numericalcomputation,logic,mathematics-dev} |
debian-science | 4 | {psychophysics} |
gf2x | 4 | {mathematics-dev} |
iml | 4 | {mathematics-dev} |
libmatheval | 4 | {mathematics-dev} |
- looptools | 4 | {highenergy-physics} |
lrcalc | 4 | {mathematics-dev} |
+ mbtserver | 4 | {linguistics} |
mrmpi | 4 | {tools} |
+ openmx | 4 | {physics,nanoscale-physics} |
qd | 4 | {mathematics-dev} |
+ qwtplot3d | 4 | {viewing-dev} |
tango | 4 | {dataacquisition-dev} |
taurus | 4 | {dataacquisition} |
- debian-science | 3 | {electrophysiology} |
+ timblserver | 4 | {linguistics} |
+ x13as | 4 | {economics} |
+ cernlib | 3 | {highenergy-physics} |
+ coda | 3 | {meteorology} |
debian-science | 3 | {nanoscale-physics-dev} |
+ debian-science | 3 | {electrophysiology} |
dune-localfunctions | 3 | {mathematics-dev} |
dxflib | 3 | {engineering-dev} |
ipe-tools | 3 | {typesetting} |
@@ -132,9 +132,9 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
libgetdata | 3 | {dataacquisition-dev} |
libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
libhomfly | 3 | {mathematics-dev} |
+ looptools | 3 | {highenergy-physics} |
newmat | 3 | {mathematics-dev} |
openstereogram | 3 | {tools} |
- qwtplot3d | 3 | {viewing-dev} |
ratpoints | 3 | {mathematics-dev} |
sardana | 3 | {dataacquisition} |
tango | 3 | {dataacquisition-dev} |
@@ -147,12 +147,13 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
harp | 2 | {meteorology} |
hpcc | 2 | {numericalcomputation,distributedcomputing} |
libccp4 | 2 | {nanoscale-physics-dev} |
+ liblbfgs | 2 | {mathematics-dev} |
liblxi | 2 | {dataacquisition-dev,engineering-dev} |
looptools | 2 | {highenergy-physics-dev} |
openctm | 2 | {physics-dev} |
sparskit | 2 | {mathematics-dev} |
- ssm | 2 | {nanoscale-physics} |
asl | 1 | {physics-dev} |
+ cernlib | 1 | {highenergy-physics} |
ckon | 1 | {highenergy-physics-dev} |
cld2 | 1 | {linguistics} |
clipper | 1 | {nanoscale-physics-dev} |
@@ -167,7 +168,6 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
gemmlowp | 1 | {mathematics-dev} |
itsol | 1 | {mathematics-dev} |
libgetdata | 1 | {dataacquisition-dev} |
- liblbfgs | 1 | {mathematics-dev} |
liborigin2 | 1 | {viewing-dev} |
metis-edf | 1 | {numericalcomputation,engineering} |
neartree | 1 | {numericalcomputation,mathematics-dev} |
@@ -179,6 +179,7 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
python-escript | 1 | {simulations,engineering,numericalcomputation} |
quadrule | 1 | {mathematics-dev} |
ros-opencv-apps | 1 | {robotics} |
+ ssm | 1 | {nanoscale-physics} |
tamuanova | 1 | {statistics} |
tango | 1 | {dataacquisition} |
vlfeat | 1 | {imageanalysis-dev} |
@@ -216,9 +217,9 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
calculix-ccx-test | 0 | {simulations,engineering,numericalcomputation} |
cbflib | 0 | {nanoscale-physics-dev} |
- cernlib | 0 | {highenergy-physics-dev} |
- cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics} |
+ cernlib | 0 | {highenergy-physics,physics} |
+ cernlib | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
code-saturne | 0 | {engineering} |
@@ -242,8 +243,8 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
mclibs | 0 | {highenergy-physics} |
metis-edf | 0 | {engineering-dev} |
ompl | 0 | {robotics} |
- openturns | 0 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
+ openturns | 0 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
psurface | 0 | {numericalcomputation} |
python-aws-xray-sdk | 0 | {dataacquisition-dev} |
qrupdate | 0 | {mathematics-dev} |
@@ -262,5 +263,5 @@ Last-Update: Sat, 30 Apr 2022 01:42:04 +0000
triangle | 0 | {physics-dev} |
trilinos | 0 | {physics-dev,mathematics-dev,engineering-dev} |
visp-images | 0 | {robotics-dev} |
-(294 rows)
+(295 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9825fd57a1e76749e0b5f763c98c414927b91c28
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