[med-svn] [Git][med-team/ncbi-igblast][master] 2 commits: Follow hint of Aaron given here https://lists.debian.org/debian-med/2022/08/msg00005.html

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / ncbi-igblast


Commits:
df2f1cca by Andreas Tille at 2022-08-02T10:38:09+02:00
Follow hint of Aaron given here https://lists.debian.org/debian-med/2022/08/msg00005.html

- - - - -
b37949a7 by Andreas Tille at 2022-08-03T21:02:40+02:00
Try to adjust configure options

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -5,6 +5,7 @@ ncbi-igblast (1.19.0-2) UNRELEASED; urgency=medium
   * Recommends: ncbi-blast+
   * Install edit_imgt_file.pl and c++/src/app/igblast/internal_data
   * Build-Depends: libncbi-vdb-dev, drop --without-vdb option
+  * Do a more targeted build using --with-flat-makefile
 
  -- Andreas Tille <tille at debian.org>  Sat, 30 Jul 2022 09:29:11 +0200
 


=====================================
debian/control
=====================================
@@ -6,7 +6,8 @@ Uploaders: David Miguel Susano Pinto <carandraug+dev at gmail.com>,
            Steffen Moeller <moeller at debian.org>
 Build-Depends: debhelper-compat (= 13),
                time,
-               libncbi-vdb-dev
+               libncbi-vdb-dev,
+               libopenmpi-dev
 Standards-Version: 4.6.1
 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-igblast
 Vcs-Git: https://salsa.debian.org/med-team/ncbi-igblast.git


=====================================
debian/rules
=====================================
@@ -6,18 +6,13 @@
 override_dh_auto_configure:
 	cd c++ && yes | \
         ./configure.orig --prefix=/usr \
-	  --without-gbench --without-internal --without-gui --without-ctools --without-app --without-connext \
-	  --without-ncbi-crypt \
-	  --without-ngs \
-	  --without-dll --without-debug --with-strip \
-	  --without-openmp --without-mt --without-mesa --without-glut --without-orbacus --without-sp \
-	  --without-local-lbsm --without-cppkafka --without-librdkafka --without-apache-arrow --without-hiredis --without-aws-sdk --without-msgsl --without-grpc --without-protobuf --without-libxlsxwriter --without-influxdb --without-h2o --without-nghttp2 --without-cassandra \
-	  --without-libssh2 --without-libuv --without-lmdb --without-mongodb --without-leveldb --without-gmock --without-gsoap --without-avro --without-cereal --without-oechem --without-zorba --without-xalan --without-xerces --without-libexslt --without-sablot --without-icu --without-sybase \
-	  --without-python --without-perl \
-	  --without-runpath
+	  --with-openmp \
+	  --with-vdb VDB_LIBS=-lncbi-vdb VDB_INCLUDE=-I/usr/include/ncbi-vdb \
+	  --without-runpath \
+	  --with-flat-makefile
 
 override_dh_auto_build:
-	cd c++ && make
+	cd c++/*/build && make -f Makefile.flat app/igblast/
 
 override_dh_auto_install:
 	find . -name igblastn



View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/-/compare/c70ea988bf68ca4bfe761244cb585a8c27c671fe...b37949a7d94e590a26e6e72ffe5e0b6fce552f0f

-- 
View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/-/compare/c70ea988bf68ca4bfe761244cb585a8c27c671fe...b37949a7d94e590a26e6e72ffe5e0b6fce552f0f
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