[med-svn] [Git][med-team/ugene][master] 8 commits: Fix watch file

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / ugene


Commits:
ef70a18a by Andreas Tille at 2022-12-01T18:22:29+01:00
Fix watch file

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bd451e6c by Andreas Tille at 2022-12-01T18:23:18+01:00
routine-update: New upstream version

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1b52b128 by Andreas Tille at 2022-12-01T18:23:21+01:00
New upstream version 45.00+dfsg
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f6569889 by Andreas Tille at 2022-12-01T18:23:55+01:00
Update upstream source from tag 'upstream/45.00+dfsg'

Update to upstream version '45.00+dfsg'
with Debian dir bac5407e67ddadcf4fad0d25760d40748fb233af
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036c4053 by Andreas Tille at 2022-12-01T18:48:05+01:00
Refresh patches

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bfa5d90b by Andreas Tille at 2022-12-01T18:48:43+01:00
Fix changelog

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a68c37ce by Andreas Tille at 2022-12-01T20:10:45+01:00
Use Debian packaged sqlite

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c7f702b8 by Andreas Tille at 2022-12-01T21:54:25+01:00
Really use Debian packaged sqlite - no idea why settings of zlib and sqlite are inconsistently used

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30 changed files:

- .clang-format
- .gitignore
- LICENSE.3rd_party.txt
- README.md
- data/cmdline/extract_consensus_sequence.uwl
- data/cmdline/extract_consensus_string.uwl
- data/cmdline/find-sw.uwl
- data/cmdline/gene-by-gene.uwl
- data/cmdline/local-blast+.uwl → data/cmdline/local-blast.uwl
- data/samples/Sanger/alignment.ugenedb
- − data/workflow_samples/NGS/cistrome.uwl
- − data/workflow_samples/NGS/cistrome/chip_seq.uwl
- − data/workflow_samples/NGS/cistrome/chip_seq_with_control.uwl
- − data/workflow_samples/NGS/from_tools_menu_only/ngs_classification.uwl
- − data/workflow_samples/NGS/ngs_classification/ngs_classification_de_novo/ngs_classification_de_novo_paired.uwl
- − data/workflow_samples/NGS/ngs_classification/ngs_classification_de_novo/ngs_classification_de_novo_single.uwl
- − data/workflow_samples/NGS/ngs_classification/ngs_classification_parallel/ngs_classification_parallel_paired.uwl
- − data/workflow_samples/NGS/ngs_classification/ngs_classification_parallel/ngs_classification_parallel_single.uwl
- − data/workflow_samples/NGS/ngs_classification/ngs_classification_serial/ngs_classification_serial_paired.uwl
- − data/workflow_samples/NGS/ngs_classification/ngs_classification_serial/ngs_classification_serial_single.uwl
- − data/workflow_samples/NGS/ngs_classification_de_novo.uwl
- − data/workflow_samples/NGS/ngs_classification_parallel.uwl
- − data/workflow_samples/NGS/ngs_classification_serial.uwl
- data/workflow_samples/Scenarios/gene_by_gene_report.uwl
- data/workflow_samples/Scenarios/pcr.uwl
- debian/changelog
- − debian/patches/Fix-for-non-constant-SIGSTKSZ.patch
- debian/patches/hardening.patch
- debian/patches/series
- debian/patches/use_debian_sqlite.patch


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ugene/-/compare/3d5cb3a7325ebd867f84b3bae60a84e8f42079c4...c7f702b82d7377ec947496d37e35bbc6c3e597f1

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View it on GitLab: https://salsa.debian.org/med-team/ugene/-/compare/3d5cb3a7325ebd867f84b3bae60a84e8f42079c4...c7f702b82d7377ec947496d37e35bbc6c3e597f1
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