[med-svn] [Git][med-team/toil][master] 11 commits: d/watch: update for new tag structure

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
521b2e28 by Michael R. Crusoe at 2022-11-17T15:06:10+01:00
d/watch: update for new tag structure

- - - - -
907eba8f by Michael R. Crusoe at 2022-11-17T15:06:39+01:00
routine-update: New upstream version

- - - - -
7a49767c by Michael R. Crusoe at 2022-11-17T15:06:40+01:00
New upstream version 5.7.1
- - - - -
d7356d91 by Michael R. Crusoe at 2022-11-17T15:06:49+01:00
Update upstream source from tag 'upstream/5.7.1'

Update to upstream version '5.7.1'
with Debian dir cc31f9708dcabe3696659ca008e4a3321cf643a6
- - - - -
57cbd3e5 by Michael R. Crusoe at 2022-11-18T14:15:59+01:00
refresh patches

- - - - -
af4a8aa6 by Michael R. Crusoe at 2022-11-24T14:42:18+01:00
d/patches/typing_fix: workaround for us skipping the AWS extra during building

- - - - -
56c9eb6d by Michael R. Crusoe at 2022-11-24T15:01:28+01:00
skip another test

- - - - -
7a849590 by Michael R. Crusoe at 2022-11-24T16:10:51+01:00
the expression module is now part of cwl-utils not cwltool

- - - - -
5b5f9ed3 by Michael R. Crusoe at 2022-11-25T14:30:15+01:00
d/rules: skip more tests that fail when run as root

- - - - -
59f22754 by Michael R. Crusoe at 2022-11-28T15:26:58+01:00
d/patches/test_safe_paths: fix for running tests post-installation

- - - - -
14e946be by Michael R. Crusoe at 2022-11-28T15:45:11+01:00
freshen patch metadata

- - - - -


30 changed files:

- .gitlab-ci.yml
- Makefile
- attic/README.md
- contrib/admin/cleanup_aws_resources.py
- contrib/admin/mypy-with-ignore.py
- + contrib/hooks/lib.py
- + contrib/hooks/mypy-after-commit.py
- + contrib/hooks/mypy-before-push.py
- + contrib/pod-murder-bot/murder.yaml
- + contrib/pod-murder-bot/podKiller.sh
- contrib/typeshed/dill/_dill.pyi
- dashboard/grafana/toil_dashboard.json
- dashboard/mtail/Dockerfile
- debian/changelog
- debian/control
- debian/patches/atomic_copy_as_alternative.patch
- debian/patches/exit_code_exception
- + debian/patches/newer_cwltool
- debian/patches/no_galaxy_lib
- debian/patches/python3_in_doc.patch
- debian/patches/series
- debian/patches/setting_version.patch
- debian/patches/ship_tests
- + debian/patches/test_safe_paths
- + debian/patches/typing_fix
- debian/rules
- debian/tests/run-unit-tests
- debian/watch
- docker/Dockerfile.py
- + docker/singularity-sources.tsv


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/9e0c25719d2b45939e8c35f97e7bd866e2d1c633...14e946bea1d3869716df2b520648ebaf4d4f68de

-- 
View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/9e0c25719d2b45939e8c35f97e7bd866e2d1c633...14e946bea1d3869716df2b520648ebaf4d4f68de
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20221221/ff4aefc2/attachment.htm>