[med-svn] [Git][med-team/python-skbio][master] 4 commits: Add patch to fix FTBFS (Closes: #1026474)

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / python-skbio


Commits:
8f0a0b73 by Nilesh Patra at 2022-12-21T13:44:30+05:30
Add patch to fix FTBFS (Closes: #1026474)

- - - - -
f7dee501 by Nilesh Patra at 2022-12-21T13:44:51+05:30
Upload to unstable

- - - - -
bdebac1e by Nilesh Patra at 2022-12-21T14:16:40+05:30
Merge branch 'debian-0.5.6-7'

- - - - -
2419da72 by Nilesh Patra at 2022-12-21T14:18:28+05:30
Update d/p/s

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/precision_bug.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -18,6 +18,13 @@ python-skbio (0.5.7-1) UNRELEASED; urgency=medium
 
  -- Étienne Mollier <emollier at debian.org>  Sat, 03 Dec 2022 23:25:19 +0100
 
+python-skbio (0.5.6-7) unstable; urgency=medium
+
+  * Team Upload.
+  * Add patch to fix FTBFS (Closes: #1026474)
+
+ -- Nilesh Patra <nilesh at debian.org>  Wed, 21 Dec 2022 13:44:41 +0530
+
 python-skbio (0.5.6-6) unstable; urgency=medium
 
   * Team upload


=====================================
debian/patches/precision_bug.patch
=====================================
@@ -0,0 +1,28 @@
+Description: Do not match exact values in pielou_e due to float round point precision, rather
+ check in close range
+Author: Nilesh Patra <nilesh at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1026474
+Last-Update: 2022-12-21
+--- a/skbio/diversity/alpha/tests/test_base.py
++++ b/skbio/diversity/alpha/tests/test_base.py
+@@ -11,6 +11,7 @@
+ 
+ import numpy as np
+ import numpy.testing as npt
++from math import isclose
+ 
+ from skbio import TreeNode
+ from skbio.diversity.alpha import (
+@@ -215,9 +216,9 @@
+ 
+         self.assertAlmostEqual(pielou_e(self.counts), 0.92485490560)
+ 
+-        self.assertEqual(pielou_e([1, 1]), 1.0)
+-        self.assertEqual(pielou_e([1, 1, 1, 1]), 1.0)
+-        self.assertEqual(pielou_e([1, 1, 1, 1, 0, 0]), 1.0)
++        assert isclose(pielou_e([1, 1]), 1.0, abs_tol=1e-3)
++        assert isclose(pielou_e([1, 1, 1, 1]), 1.0, abs_tol=1e-3)
++        assert isclose(pielou_e([1, 1, 1, 1, 0, 0]), 1.0, abs_tol=1e-3)
+ 
+         # Examples from
+         # http://ww2.mdsg.umd.edu/interactive_lessons/biofilm/diverse.htm#3


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ mathjax-path
 0002-use-libsww-as-library-not-embedded-src.patch
 no_privacy_breach_logo.patch
 local_inventory
+precision_bug.patch



View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/b68aca0dfebe9d3fd8edf968c633de3192f807f5...2419da72a73017d750a9f96d315b6659fd9c20d3

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/b68aca0dfebe9d3fd8edf968c633de3192f807f5...2419da72a73017d750a9f96d315b6659fd9c20d3
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