[med-svn] [Git][med-team/pangolin][master] 7 commits: Fix watch file

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / pangolin


Commits:
d2a74681 by Andreas Tille at 2022-12-23T16:17:04+01:00
Fix watch file

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032c4949 by Andreas Tille at 2022-12-23T16:18:38+01:00
routine-update: New upstream version

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2726a5f5 by Andreas Tille at 2022-12-23T16:18:39+01:00
New upstream version 4.1.3
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ba93f738 by Andreas Tille at 2022-12-23T16:18:40+01:00
Update upstream source from tag 'upstream/4.1.3'

Update to upstream version '4.1.3'
with Debian dir 67597d006c3507f9a9f4d0a13a8124c8e9006afd
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8f5c8361 by Andreas Tille at 2022-12-23T16:18:51+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse..

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html

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c6b46885 by Andreas Tille at 2022-12-23T16:29:48+01:00
lineages was replaced by pango-designation (to be packaged)

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a9c3195e by Andreas Tille at 2022-12-24T16:07:33+01:00
Add new depends

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30 changed files:

- + .dockerignore
- + .github/workflows/pangolin.yml
- + .github/workflows/pangolin_macos.yml
- + .github/workflows/push_dockerhub.yml
- + .gitignore
- + Dockerfile
- README.md
- + TESTING.md
- debian/changelog
- debian/control
- debian/tests/run-unit-test
- debian/upstream/metadata
- debian/watch
- environment.yml
- pangolin/__init__.py
- pangolin/command.py
- + pangolin/data/data_compatibility.csv
- + pangolin/pangolearn/__init__.py
- + pangolin/pangolearn/pangolearn.py
- − pangolin/scripts/Snakefile
- − pangolin/scripts/assign_lineage.py
- − pangolin/scripts/assign_query_file.smk
- − pangolin/scripts/assign_query_lineage.smk
- − pangolin/scripts/categorise_snps.py
- − pangolin/scripts/defining_snps.py
- − pangolin/scripts/lineage_classes.py
- − pangolin/scripts/lineage_finder.py
- − pangolin/scripts/pangolearn.py
- pangolin/scripts/pangolearn.smk
- + pangolin/scripts/preprocessing.smk


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pangolin/-/compare/65914a4374a2c64f28783d07c7b551199dccf9d2...a9c3195ea0286c0825d3b83bf927c599453afa0c

-- 
View it on GitLab: https://salsa.debian.org/med-team/pangolin/-/compare/65914a4374a2c64f28783d07c7b551199dccf9d2...a9c3195ea0286c0825d3b83bf927c599453afa0c
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