[med-svn] [Git][med-team/pangolin][upstream] New upstream version 4.1.3

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / pangolin


Commits:
2726a5f5 by Andreas Tille at 2022-12-23T16:18:39+01:00
New upstream version 4.1.3
- - - - -


30 changed files:

- + .dockerignore
- + .github/workflows/pangolin.yml
- + .github/workflows/pangolin_macos.yml
- + .github/workflows/push_dockerhub.yml
- + .gitignore
- + Dockerfile
- README.md
- + TESTING.md
- environment.yml
- pangolin/__init__.py
- pangolin/command.py
- + pangolin/data/data_compatibility.csv
- + pangolin/pangolearn/__init__.py
- + pangolin/pangolearn/pangolearn.py
- − pangolin/scripts/Snakefile
- − pangolin/scripts/assign_lineage.py
- − pangolin/scripts/assign_query_file.smk
- − pangolin/scripts/assign_query_lineage.smk
- − pangolin/scripts/categorise_snps.py
- − pangolin/scripts/defining_snps.py
- − pangolin/scripts/lineage_classes.py
- − pangolin/scripts/lineage_finder.py
- − pangolin/scripts/pangolearn.py
- pangolin/scripts/pangolearn.smk
- + pangolin/scripts/preprocessing.smk
- − pangolin/scripts/report_classes.py
- − pangolin/scripts/report_results.py
- − pangolin/scripts/sam_2_snps.py
- − pangolin/scripts/snp_based_classifier.py
- − pangolin/scripts/snp_based_classify.smk


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pangolin/-/commit/2726a5f55cf63579be66d64c4e2650fe664bb560

-- 
View it on GitLab: https://salsa.debian.org/med-team/pangolin/-/commit/2726a5f55cf63579be66d64c4e2650fe664bb560
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20221224/3810618d/attachment.htm>