[med-svn] [Git][med-team/poretools][master] 3 commits: Add patch to fix FTBFS with new matplotlib 3.6.2 (Closes: #1027169)

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / poretools


Commits:
04d3e100 by Nilesh Patra at 2022-12-29T13:46:43+05:30
Add patch to fix FTBFS with new matplotlib 3.6.2 (Closes: #1027169)

- - - - -
d80a7de3 by Nilesh Patra at 2022-12-29T13:57:08+05:30
Explicitly depend on python3-h5py which somehow does not get picked up by debhelper

- - - - -
ece98b89 by Nilesh Patra at 2022-12-29T13:57:08+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/matplotlib.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+poretools (0.6.0+dfsg-6) unstable; urgency=medium
+
+  * Team Upload.
+  * Add patch to fix FTBFS with new matplotlib 3.6.2 (Closes: #1027169)
+  * Explicitly depend on python3-h5py which somehow does not get picked
+    up by debhelper
+
+ -- Nilesh Patra <nilesh at debian.org>  Thu, 29 Dec 2022 13:46:47 +0530
+
 poretools (0.6.0+dfsg-5) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/control
=====================================
@@ -21,7 +21,8 @@ Package: poretools
 Architecture: all
 Depends: ${misc:Depends},
          ${python3:Depends},
-         python3-pkg-resources
+         python3-pkg-resources,
+         python3-h5py
 Description: toolkit for nanopore nucleotide sequencing data
  poretools is a flexible toolkit for exploring datasets generated by nanopore
  sequencing devices from MinION for the purposes of quality control and


=====================================
debian/patches/matplotlib.patch
=====================================
@@ -0,0 +1,41 @@
+Description: Change figsize with new matplotlib
+Author: Nilesh Patra <nilesh at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1027169
+Last-Update: 2022-12-29
+--- a/poretools/occupancy.py
++++ b/poretools/occupancy.py
+@@ -42,11 +42,13 @@
+     df = pd.DataFrame(d)
+ 
+     d = df.pivot("rownum", "colnum", "tot_reads")
++    if args.saveas is not None:
++        plt.figure(figsize=(8.5,8.5))
+     sns.heatmap(d, annot=True, fmt="d", linewidths=.5)
+ 
+     if args.saveas is not None:
+         plot_file = args.saveas
+-        plt.savefig(plot_file, figsize=(8.5, 8.5))
++        plt.savefig(plot_file)
+     else:
+         plt.show()
+ 
+--- a/poretools/yield_plot.py
++++ b/poretools/yield_plot.py
+@@ -51,6 +51,8 @@
+             sns.set_style("whitegrid")
+ 
+         # plot
++        if args.saveas is not None:
++            plt.figure(figsize=(8.5,8.5))
+         plt.plot(df['start'], df['cumul'])
+         plt.xlabel('Time (hours)')
+         plt.ylabel(y_label)
+@@ -58,7 +60,7 @@
+ 
+         if args.saveas is not None:
+             plot_file = args.saveas
+-            plt.savefig(plot_file, figsize=(8.5, 8.5))
++            plt.savefig(plot_file)
+         else:
+             plt.show()
+ 


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 python3.patch
+matplotlib.patch



View it on GitLab: https://salsa.debian.org/med-team/poretools/-/compare/9e0b1900bab9213bf52b12974c6b0c17f3c66d4c...ece98b8948a94b789bc2b7085e854b8cdbdc004e

-- 
View it on GitLab: https://salsa.debian.org/med-team/poretools/-/compare/9e0b1900bab9213bf52b12974c6b0c17f3c66d4c...ece98b8948a94b789bc2b7085e854b8cdbdc004e
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