[med-svn] [Git][med-team/python-cooler][master] 4 commits: routine-update: Packaging update

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-cooler


Commits:
145d6ce7 by Andreas Tille at 2022-12-29T20:21:44+01:00
routine-update: Packaging update

- - - - -
ffe8e12a by Andreas Tille at 2022-12-29T20:21:44+01:00
routine-update: Standards-Version: 4.6.2

- - - - -
096e4aa9 by Andreas Tille at 2022-12-29T20:28:45+01:00
Fix AttributeError: module 'numpy' has no attribute 'object'.

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b5078c3d by Andreas Tille at 2022-12-29T20:31:41+01:00
Upload to unstable

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4 changed files:

- debian/changelog
- debian/control
- + debian/patches/numpy_1.24.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+python-cooler (0.8.11-5) unstable; urgency=medium
+
+  * Standards-Version: 4.6.2 (routine-update)
+  * Fix AttributeError: module 'numpy' has no attribute 'object'.
+    with numpy/1.24.1
+    Closes: #1027251
+
+ -- Andreas Tille <tille at debian.org>  Thu, 29 Dec 2022 20:28:52 +0100
+
 python-cooler (0.8.11-4) unstable; urgency=medium
 
   * Does not pass its test suite on 32bit architectures


=====================================
debian/control
=====================================
@@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-multiprocess <!nocheck>,
                python3-click <!nocheck>,
                python3-cytoolz <!nocheck>,
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/python-cooler
 Vcs-Git: https://salsa.debian.org/med-team/python-cooler.git
 Homepage: https://github.com/mirnylab/cooler


=====================================
debian/patches/numpy_1.24.patch
=====================================
@@ -0,0 +1,17 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 29 Dec 2022 11:21:48 +0100
+Bug-Debian: https://bugs.debian.org/1027251
+Description: Fix AttributeError: module 'numpy' has no attribute 'object'.
+ with numpy/1.24.1
+
+--- a/cooler/util.py
++++ b/cooler/util.py
+@@ -687,7 +687,7 @@ def infer_meta(x, index=None):  # pragma
+ 
+ 
+ def get_meta(
+-    columns, dtype=None, index_columns=None, index_names=None, default_dtype=np.object
++    columns, dtype=None, index_columns=None, index_names=None, default_dtype=object
+ ):  # pragma: no cover
+     """
+     Extracted and modified from pandas/io/parsers.py :


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 exclude_tests_in_need_of_ipytree.patch
+numpy_1.24.patch



View it on GitLab: https://salsa.debian.org/med-team/python-cooler/-/compare/437743e9d045b654461fcc16512ead9b0fafbe35...b5078c3deaad97629ffa8c2d83ae0064fbe8faf9

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-cooler/-/compare/437743e9d045b654461fcc16512ead9b0fafbe35...b5078c3deaad97629ffa8c2d83ae0064fbe8faf9
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