[med-svn] [Git][med-team/sepp][master] 2 commits: Fix collections import under py3.10+

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / sepp


Commits:
d5e95488 by Andreas Hasenack at 2022-02-04T14:19:53+00:00
Fix collections import under py3.10+

Closes: #1004968

- - - - -
1649634f by Andreas Tille at 2022-02-04T21:04:21+00:00
Merge branch 'salsa-py310-collections-import-fix' into 'master'

Fix collections import under py3.10+

See merge request med-team/sepp!1
- - - - -


2 changed files:

- + debian/patches/py310_collections_import.patch
- debian/patches/series


Changes:

=====================================
debian/patches/py310_collections_import.patch
=====================================
@@ -0,0 +1,25 @@
+Description: fix collections import
+ In python 3.10[1] deprecated aliases to Collections Abstract Base Classes from
+ the collections module have been removed. These imports must be done from
+ collections.abc.
+ .
+ 1. https://docs.python.org/3/whatsnew/3.10.html
+Author: Andreas Hasenack <andreas at canonical.com>
+Bug: https://github.com/smirarab/sepp/issues/117
+Bug-Debian: https://bugs.debian.org/1004968
+Bub-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/sepp/+bug/1959938
+Last-Update: 2022-02-03
+diff --git a/sepp/alignment.py b/sepp/alignment.py
+index ada5de8..61e9adb 100644
+--- a/sepp/alignment.py
++++ b/sepp/alignment.py
+@@ -26,7 +26,8 @@ import re
+ 
+ from sepp.filemgr import open_with_intermediates
+ 
+-from collections import Mapping
++
++from collections.abc import Mapping
+ import copy
+ from sepp import get_logger
+ import io


=====================================
debian/patches/series
=====================================
@@ -6,3 +6,4 @@ configuration_files_in_etc_and_per_user.patch
 deactivating_log_test.patch
 using_python3_interpreter.patch
 hmmbuild_path_for_testUPP.patch
+py310_collections_import.patch



View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/6e23e0926c222a87ce369952e31daaf1cc62c6d5...1649634f854bbd90be268075fd40b9380203da43

-- 
View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/6e23e0926c222a87ce369952e31daaf1cc62c6d5...1649634f854bbd90be268075fd40b9380203da43
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