[med-svn] [Git][med-team/resfinder][master] 6 commits: Create changelog entry
Andreas Tille (@tille)
gitlab at salsa.debian.org
Mon Feb 7 06:57:06 GMT 2022
Andreas Tille pushed to branch master at Debian Med / resfinder
Commits:
9313c3df by Andreas Tille at 2022-02-07T06:32:01+01:00
Create changelog entry
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b1b8ee0f by Andreas Tille at 2022-02-07T06:32:12+01:00
routine-update: New upstream version
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13eb75a2 by Andreas Tille at 2022-02-07T07:21:07+01:00
New upstream version 4.1.6
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576609ee by Andreas Tille at 2022-02-07T07:21:08+01:00
Update upstream source from tag 'upstream/4.1.6'
Update to upstream version '4.1.6'
with Debian dir 86274a1d6710dc3ce8ea47196932f16a18a21593
- - - - -
72f9cd37 by Andreas Tille at 2022-02-07T07:23:13+01:00
Hint how to import source
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7ff86d79 by Andreas Tille at 2022-02-07T07:24:57+01:00
Upload to unstable
- - - - -
19 changed files:
- README.md
- + amr_abbreviations.md
- cge/resfinder.py
- debian-tests-data/db_pointfinder/klebsiella/genes.txt
- + debian-tests-data/db_pointfinder/klebsiella/gyrB.fsa
- debian-tests-data/db_pointfinder/klebsiella/resistens-overview.txt
- + debian-tests-data/db_pointfinder/klebsiella/rpsL.fsa
- debian-tests-data/db_resfinder/aminoglycoside.fsa
- debian-tests-data/db_resfinder/antibiotic_classes.txt
- debian-tests-data/db_resfinder/beta-lactam.fsa
- debian-tests-data/db_resfinder/history.txt
- debian-tests-data/db_resfinder/notes.txt
- debian-tests-data/db_resfinder/phenotype_panels.txt
- debian-tests-data/db_resfinder/phenotypes.txt
- debian-tests-data/db_resfinder/trimethoprim.fsa
- debian/changelog
- debian/tests/get-test-data
- run_resfinder.py
- scripts/install_resfinder.sh
Changes:
=====================================
README.md
=====================================
@@ -277,8 +277,10 @@ optional arguments:
-acq, --acquired Run resfinder for acquired resistance genes
-l MIN_COV, --min_cov MIN_COV
Minimum (breadth-of) coverage of ResFinder
+ Valid interval: 0.00-1.00
-t THRESHOLD, --threshold THRESHOLD
Threshold for identity of ResFinder
+ Valid interval: 0.00-1.00
-c, --point Run pointfinder for chromosomal mutations
-db_point DB_PATH_POINT, --db_path_point DB_PATH_POINT
Path to the databases for PointFinder
=====================================
amr_abbreviations.md
=====================================
@@ -0,0 +1,131 @@
+# Antimicrobial Abbreviations
+
+In ResFinder results where antimicrobial abbreviations are used, it will use the [EUCAST System for Antimicrobial Abbreviations](https://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Disk_test_documents/Disk_abbreviations/EUCAST_system_for_antimicrobial_abbreviations.pdf).
+
+## Abbreviations
+
+| Antimicrobial | Abbreviation |
+|-------------------------------|--------------|
+| Amikacin | AMI |
+| Amoxicillin | AMO |
+| Amoxicillin-clavulanate | AMC |
+| Ampicillin | AMP |
+| Ampicillin-sulbactam | AMS |
+| Avibactam | AVI |
+| Azithromycin | AZI |
+| Aztreonam | AZT |
+| Benzylpenicillin | BEN |
+| Cefaclor | CCL |
+| Cefadroxil | CDR |
+| Cefalexin | CLE |
+| Cefazolin | CZO |
+| Cefepime | CEP |
+| Cefixime | CIX |
+| Cefotaxime | CTA |
+| Cefoxitin | CXI |
+| Cefpodoxime | CPO |
+| Ceftaroline | CTL |
+| Ceftazidime | CTZ |
+| Ceftazidime-avibactam | CTV |
+| Ceftibuten | CTI |
+| Ceftiofur | CTF |
+| Ceftobiprole | CTO |
+| Ceftolozane-tazobactam | CTT |
+| Ceftriaxone | CTR |
+| Cefuroxime | CUR |
+| Chloramphenicol | CHL |
+| Ciprofloxacin | CIP |
+| Clarithromycin | CLA |
+| Clavulanic acid | CLV |
+| Clindamycin | CLI |
+| Cloxacillin | CLO |
+| Colistin | COL |
+| Dalbavancin | DAL |
+| Daptomycin | DAP |
+| Dicloxacillin | DIC |
+| Difloxacin | DIF |
+| Doripenem | DOR |
+| Doxycyline | DOX |
+| Enrofloxacin | ENR |
+| Ertapenem | ERT |
+| Erythromycin | ERY |
+| Florfenicol | FLO |
+| Flucloxacillin | FLU |
+| Fosfomycin | FOS |
+| Fusidic acid | FUS |
+| Gamithromycin | GAM |
+| Gentamicin | GEN |
+| Gepotidacin | GEP |
+| Imipenem | IMI |
+| Kanamycin | KAN |
+| Levofloxacin | LEV |
+| Linezolid | LIN |
+| Marbofloxacin | MAR |
+| Mecillinam | MEC |
+| Meropenem | MER |
+| Methicillin | MEH |
+| Metronidazole | MET |
+| Minocycline | MIN |
+| Moxifloxacin | MOX |
+| Mupirocin | MUP |
+| Nalidixic acid | NAL |
+| Netilmicin | NET |
+| Nitrofurantoin | NIT |
+| Norfloxacin | NOR |
+| Novobiocin | NOV |
+| Ofloxacin | OFL |
+| Orbifloxacin | ORB |
+| Oritavancin | ORI |
+| Oxacillin | OXA |
+| Oxytetracycline | OXY |
+| Pefloxacin | PEF |
+| Phenethicillin | PHN |
+| Phenoxymethypenicillin | PHE |
+| Pipemidic acid | PIE |
+| Piperacillin | PIP |
+| Piperacillin-tazobactam | PIT |
+| Pirlimycin | PIR |
+| Pradofloxacin | PRA |
+| Quinupristin-dalfopristin | QUD |
+| Relabactam | REL |
+| Retapamulin | RET |
+| Rifampicin | RIF |
+| Roxithromycin | ROX |
+| Spectinomycin | SPE |
+| Spectinomycin | SPE |
+| Streptomycin | STR |
+| Streptomycin | STR |
+| Sulbactam | SUL |
+| Sulbactam | SUL |
+| Sulfamethoxazole | SME |
+| Sulfamethoxazole | SME |
+| Sulfathiazole | STH |
+| Sulfathiazole | STH |
+| Sulfisoxazole | SIS |
+| Sulfisoxazole | SIS |
+| Tazobactam | TAZ |
+| Tazobactam | TAZ |
+| Tedizolid | TED |
+| Tedizolid | TED |
+| Teicoplanin | TEI |
+| Teicoplanin | TEI |
+| Telavancin | TEL |
+| Telavancin | TEL |
+| Telithromycin | TEH |
+| Telithromycin | TEH |
+| Tetracycline | TET |
+| Tetracycline | TET |
+| Tiamulin | TIA |
+| Tiamulin | TIA |
+| Ticarcillin | TIC |
+| Ticarcillin-clavulanate | TIL |
+| Tigecycline | TIG |
+| Tildipirosin | TID |
+| Tilmicosin | TIM |
+| Tobramycin | TOB |
+| Trimethoprim | TRI |
+| Trimethoprim-sulfamethoxazole | TRS |
+| Tulathromycin | TUL |
+| Vaborbactam | VAB |
+| Valnemulin | VAL |
+| Vancomycin | VAN |
=====================================
cge/resfinder.py
=====================================
@@ -547,6 +547,11 @@ if __name__ == '__main__':
dest="threshold",
help="Blast threshold for identity",
default=0.90)
+ parser.add_argument("-nano", "--nanopore",
+ action="store_true",
+ dest="nanopore",
+ help="If nanopore data is used",
+ default=False)
args = parser.parse_args()
##########################################################################
@@ -637,8 +642,12 @@ if __name__ == '__main__':
notes=notes_path)
# if input_fastq2 is None, it is ignored by the kma method.
- kma_run = finder.kma(inputfile_1=input_fastq1,
- inputfile_2=input_fastq2)
+ if args.nanopore:
+ kma_run = finder.kma(inputfile_1=input_fastq1,
+ inputfile_2=input_fastq2, kma_add_args='-ont -md 5')
+ else:
+ kma_run = finder.kma(inputfile_1=input_fastq1,
+ inputfile_2=input_fastq2)
finder.write_results(out_path=out_path, result=kma_run,
res_type=ResFinder.TYPE_KMA)
=====================================
debian-tests-data/db_pointfinder/klebsiella/genes.txt
=====================================
@@ -4,4 +4,6 @@ ompK36
ompK37
ramR
gyrA
+gyrB
+rpsL
parC
=====================================
debian-tests-data/db_pointfinder/klebsiella/gyrB.fsa
=====================================
@@ -0,0 +1,36 @@
+>gyrB
+TTGATGTCGAATTCTTATGACTCCTCCAGTATCAAAGTCCTGAAAGGGCTGGATGCGGTGCGTAAGCGCC
+CGGGTATGTATATCGGCGACACGGATGACGGCACCGGTCTGCACCACATGGTATTCGAGGTTGTGGATAA
+CGCTATCGACGAAGCGCTCGCGGGTTACTGCAAAGATATCGTTGTCACCATCCACAGCGATAACTCCGTC
+TCCGTCCAGGATGACGGCCGCGGCATCCCGACCGGCATTCACCCGGAAGAGGGCGTCTCCGCAGCGGAAG
+TTATCATGACCGTCCTGCACGCTGGCGGTAAATTCGATGATAACTCCTATAAAGTTTCCGGCGGTCTGCA
+CGGCGTAGGCGTCTCGGTGGTTAACGCCCTGTCGCAGAAGCTGGAGCTGGTTATCCAGCGCGATAACAAA
+GTTCACAAGCAGATGTACGAACACGGTGTGCCGCAGGCACCGCTGGCCGTGACTGGCGAAACCGACAAAA
+CCGGCACCATGGTGCGTTTCTGGCCAAGCCTGGAAACCTTCACCAATGTCACCGAATTTGAATATGACAT
+CCTGGCGAAACGCCTGCGCGAGCTGTCGTTCCTGAACTCCGGCGTCTCTATCCGCCTGCGCGATAAGCGC
+GACGGCAAAGAAGACCATTTCCACTACGAAGGCGGCATCAAGGCGTTCGTTGAGTATCTCAACAAGAACA
+AAACGCCGATCCACCCGAATATTTTCTATTTCTCCACCGAAAAAGACGGTATCGGCGTGGAAGTGGCCCT
+GCAGTGGAACGACGGCTTCCAGGAAAACATCTACTGCTTTACCAACAACATTCCGCAGCGTGACGGCGGT
+ACTCACCTCGCCGGCTTCCGCGCGGCGATGACCCGTACTCTTAACGCCTATATGGACAAAGAGGGCTATA
+GCAAAAAAGCGAAAGTCAGCGCCACCGGCGACGATGCGCGTGAAGGCCTGATTGCCGTGGTATCCGTGAA
+GGTGCCGGATCCGAAATTCTCCTCGCAGACCAAAGACAAGCTGGTCTCCTCCGAGGTGAAATCGGCGGTG
+GAGCAGCAGATGAACGAACTGCTGAGCGAATACCTGCTGGAAAATCCATCCGATGCGAAAATCGTGGTCG
+GCAAAATTATTGACGCCGCGCGCGCCCGTGAGGCCGCACGTCGCGCTCGTGAGATGACTCGTCGTAAAGG
+CGCGCTGGATCTGGCAGGCCTGCCGGGCAAACTGGCGGATTGCCAGGAGCGCGACCCGGCGCTGTCCGAA
+CTGTACCTGGTGGAAGGGGACTCCGCGGGCGGCTCTGCTAAACAGGGTCGTAACCGCAAGAACCAGGCGA
+TCCTGCCGCTGAAGGGTAAAATCCTTAACGTTGAGAAAGCCCGCTTCGATAAAATGCTCTCTTCCCAGGA
+AGTGGCGACGCTGATCACCGCGCTGGGCTGCGGCATCGGTCGCGATGAGTACAATCCGGATAAACTGCGC
+TACCACAGCATCATCATCATGACCGATGCGGACGTCGACGGCTCGCACATTCGTACCCTGCTGTTGACCT
+TCTTCTATCGTCAGATGCCGGAGATCGTTGAGCGCGGCCACGTCTACATTGCCCAGCCGCCGCTGTACAA
+AGTGAAGAAAGGCAAGCAGGAACAGTACATTAAAGACGACGAAGCGATGGATCAGTATCAGATCTCCATC
+GCGCTCGACGGTGCGACCCTGCACACCAACGCCAATGCGCCGGCGCTGGCGGGCGAACCGCTGGAAAAAC
+TGGTTGCCGAGTTCAATGCCACCCAGAAAATGATTGGCCGCATGGAGCGCCGCTTCCCGAAAGCGCTGCT
+GAAAGAGCTTATCTATCAGCCGACCCTGACCGAGGCCGACCTGGCGGACGAGCAGAAGGTGACCCGCTGG
+GTGAACACCCTGGTCTCCGAGCTGAACGAGAAAGAACAGCACGGCAGCCAGTGGAAATTCGATCTCCACG
+AGAACAAAGAACTGCAGCATTTTGAGCCGGTTATTCGCGTACGTACCCACGGCGTGGATACCGACTATCC
+GCTGGATAACGAGTTCATTATGGGGCCGGAATATCGTCGTATCTGTGCCCTGGGCGAGAAACTGCGCGGC
+CTGATGGAAGAAGATGCTTACATCGAGCGCGGCGAACGTCGTCAGCCGGTAGCCAGCTTCGAGCAGGCCC
+TGGACTGGCTGGTGAAAGAGTCCCGTCGCGGTCTCTCCATCCAGCGCTATAAAGGTCTGGGCGAGATGAA
+CCCGGATCAGCTGTGGGAAACCACCATGGATCCGGACAGCCGTCGCATGCTGCGCGTGACCGTCAAGGAT
+GCCATCGCTGCCGATCAGCTGTTCACCACCCTGATGGGTGATGCCGTTGAGCCGCGTCGCGCGTTTATCG
+AAGAGAATGCCCTGAAAGCGGCGAATATCGATATTTAA
=====================================
debian-tests-data/db_pointfinder/klebsiella/resistens-overview.txt
=====================================
@@ -1,101 +1,113 @@
#Gene_ID Gene_name Codon_pos Ref_nuc Ref_codon Res_codon Resistance PMID Mechanism Notes Required_mut
-ompK36 ompK36 49 GAC D S cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 51 GAC D N cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 59 CTT L V cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 86 ACT T V cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 88 AGC S G cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 89 TCC S T cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 90 AGC S D cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 91 GAT D K cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 93 GCA A S cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 103 AAA K * carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK36 ompK36 183 GGC G D cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 183 GGC G S cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 184 GCG A M cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 184 GCG A P cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 189 GGC G T cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 190 GCT A W cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 191 CTG L Q cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 191 CTG L S cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 198 TTC F Y cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 200 ACT T L cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 207 TTC F W cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 207 TTC F Y cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 217 GCT A S carbapenem 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 218 AAC N H carbapenem 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 222 ACC T L cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 223 GAC D G cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 224 GAT D E cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 227 CAG Q N cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 227 CAG Q S cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 228 CTG L K cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 228 CTG L V cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 229 CTG L V cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 229 CTG L A cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 232 GAA E R cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 235 CAC H D cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 254 ACT T S cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompk36 260 GCT A V cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 304 AAC N E cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 354 AGC S N cephalosporins 25245001 Under development. Phenotype should be used with caution.
-acrR acrR 20 GCT A T fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 121 GGT G * tigecycline 27219271 Under development. Phenotype should be used with caution.
-acrR acrR 121 GGT G V tigecycline 27219271 Under development. Phenotype should be used with caution.
-acrR acrR 122 GAA E K tigecycline 27219271 Under development. Phenotype should be used with caution.
-acrR acrR 123 ATG M * tigecycline 27219271 Under development. Phenotype should be used with caution.
-acrR acrR 151 GCG A V fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 161 CCG P R fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 164 GGC G A fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 172 TTC F S fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 173 CGA R G fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 195 CTC L V fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 197 TTT F I fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 197 TTG L L fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 201 AAG K M fluoroquinolone 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 204 TTC F L tigecycline 28533243 Under development. Phenotype should be used with caution.
-ramR ramR 19 GCG A V tigecycline 28533243 Under development. Phenotype should be used with caution.
-ramR ramR 44 CTG L R tigecycline 28533243 Under development. Phenotype should be used with caution.
-ramR ramR 103 CAC H Q tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 111 CTC L R tigecycline 28533243 Under development. Phenotype should be used with caution.
-ramR ramR 113 GAG E K tigecycline 28533243 Under development. Phenotype should be used with caution.
-ramR ramR 122 CAG Q * tigecycline 28533243 Under development. Phenotype should be used with caution.
-ramR ramR 135 CAG Q * tigecycline 28533243 Under development. Phenotype should be used with caution.
-ramR ramR 156 CTG L V tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 175 GAG E D tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 177 ATC I T tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 178 GCC A D tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 181 TTT F * tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 190 GAG E * tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 193 GCC A S tigecycline 27219271 Under development. Phenotype should be used with caution.
-ramR ramR 195 TGA * K tigecycline 28533243 Under development. Phenotype should be used with caution.
-ompK35 ompK35 174 CAG Q * carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 70 ATT I M carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 128 ATT I M carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 230 AAC N G carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 233 ATG M Q carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 234 ACC T H carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 235 CAG Q Y carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 237 AAC N H carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 239 CGC R K carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 244 GAA E D carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 274 AAT N S carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 275 GAC D T carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 277 GTG V I carbapenem 22282462 Under development. Phenotype should be used with caution.
-gyrA gyrA 83 TCG S L ciprofloxacin 22633335 Under development. Phenotype should be used with caution.
-gyrA gyrA 83 TCG S F ciprofloxacin 22633335 Under development. Phenotype should be used with caution.
-gyrA gyrA 87 GAC D A ciprofloxacin 22633335 Under development. Phenotype should be used with caution.
-gyrA gyrA 87 GAC D N ciprofloxacin 22633335 Under development. Phenotype should be used with caution.
-gyrA gyrA 87 GAC D G ciprofloxacin 22633335 Under development. Phenotype should be used with caution.
-parC parC 80 AGT S I ciprofloxacin 22633335 Under development. Phenotype should be used with caution.
-parC parC 84 GAA E K ciprofloxacin 22633335 Under development. Phenotype should be used with caution.
-#Indels
-ompK36 ompK36 393 - ins SG cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 393 - ins FGGD cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 552 - ins GAL cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 702 - ins L cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 702 - ins P cephalosporins 25245001 Under development. Phenotype should be used with caution.
-ompK36 ompK36 933 - ins R cephalosporins 25245001 Under development. Phenotype should be used with caution.
-acrR acrR 382 CAGGCCCAGCGCCAG del QAQRQ norfloxacin,ciprofloxacin 12936981 Under development. Phenotype should be used with caution.
-acrR acrR 432 ACCCTGAAAGAA del TLKE norfloxacin,ciprofloxacin 12936981 Under development. Phenotype should be used with caution.
-ompK37 ompK37 712 - ins TERY carbapenem 22282462 Under development. Phenotype should be used with caution.
-ompK37 ompK37 824 - ins SSTNGG carbapenem 22282462 Under development. Phenotype should be used with caution.
\ No newline at end of file
+ompK36 ompK36 49 GAC D S cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 51 GAC D N cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 59 CTT L V cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 86 ACT T V cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 88 AGC S G cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 89 TCC S T cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 90 AGC S D cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 91 GAT D K cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 93 GCA A S cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 103 AAA K * carbapenem 22282462 Potential contribution to increased resistance
+ompK36 ompK36 183 GGC G D cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 183 GGC G S cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 184 GCG A M cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 184 GCG A P cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 189 GGC G T cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 190 GCT A W cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 191 CTG L Q cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 191 CTG L S cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 198 TTC F Y cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 200 ACT T L cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 207 TTC F W cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 207 TTC F Y cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 217 GCT A S carbapenem 25245001 Potential contribution to increased resistance
+ompK36 ompK36 218 AAC N H carbapenem 25245001 Potential contribution to increased resistance
+ompK36 ompK36 222 ACC T L cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 223 GAC D G cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 224 GAT D E cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 227 CAG Q N cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 227 CAG Q S cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 228 CTG L K cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 228 CTG L V cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 229 CTG L V cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 229 CTG L A cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 232 GAA E R cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 235 CAC H D cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 254 ACT T S cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompk36 260 GCT A V cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 304 AAC N E cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 354 AGC S N cephalosporins 25245001 Potential contribution to increased resistance
+acrR acrR 20 GCT A T fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 121 GGT G * tigecycline 27219271 Potential contribution to increased resistance
+acrR acrR 121 GGT G V tigecycline 27219271 Potential contribution to increased resistance
+acrR acrR 122 GAA E K tigecycline 27219271 Potential contribution to increased resistance
+acrR acrR 123 ATG M * tigecycline 27219271 Potential contribution to increased resistance
+acrR acrR 151 GCG A V fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 161 CCG P R fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 164 GGC G A fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 172 TTC F S fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 173 CGA R G fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 195 CTC L V fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 197 TTT F I fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 197 TTG L L fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 201 AAG K M fluoroquinolone 12936981 Potential contribution to increased resistance
+acrR acrR 204 TTC F L tigecycline 28533243 Potential contribution to increased resistance
+ramR ramR 19 GCG A V tigecycline 28533243 Potential contribution to increased resistance
+ramR ramR 44 CTG L R tigecycline 28533243 Potential contribution to increased resistance
+ramR ramR 103 CAC H Q tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 111 CTC L R tigecycline 28533243 Potential contribution to increased resistance
+ramR ramR 113 GAG E K tigecycline 28533243 Potential contribution to increased resistance
+ramR ramR 122 CAG Q * tigecycline 28533243 Potential contribution to increased resistance
+ramR ramR 135 CAG Q * tigecycline 28533243 Potential contribution to increased resistance
+ramR ramR 156 CTG L V tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 175 GAG E D tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 177 ATC I T tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 178 GCC A D tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 181 TTT F * tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 190 GAG E * tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 193 GCC A S tigecycline 27219271 Potential contribution to increased resistance
+ramR ramR 195 TGA * K tigecycline 28533243 Potential contribution to increased resistance
+ompK35 ompK35 174 CAG Q * carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 70 ATT I M carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 128 ATT I M carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 230 AAC N G carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 233 ATG M Q carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 234 ACC T H carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 235 CAG Q Y carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 237 AAC N H carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 239 CGC R K carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 244 GAA E D carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 274 AAT N S carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 275 GAC D T carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 277 GTG V I carbapenem 22282462 Potential contribution to increased resistance
+rpsL rpsL 43 AAG K T streptomycin unpublished Unconfirmed resistance phenotype
+rpsL rpsL 43 AAG K N streptomycin unpublished Unconfirmed resistance phenotype
+rpsL rpsL 43 AAG K R streptomycin unpublished Unconfirmed resistance phenotype
+rpsL rpsL 88 AAG K R streptomycin unpublished Unconfirmed resistance phenotype
+#Depends what is the original
+gyrB gyrB 359 TCT S A fluoroquinolone Unconfirmed resistance phenotype
+gyrB gyrB 359 TCC S A fluoroquinolone Unconfirmed resistance phenotype
+gyrB gyrB 359 TCG S A fluoroquinolone Unconfirmed resistance phenotype
+gyrB gyrB 359 TCA S A fluoroquinolone Unconfirmed resistance phenotype
+#gyrB gyrB 367 ? S T fluoroquinolone Unconfirmed resistance phenotype
+gyrA gyrA 83 TCC S L ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA gyrA 83 TCC S F ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA gyrA 83 TCC S Y ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA gyrA 83 TCC S I ciprofloxacin 30445211 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA gyrA 87 GAC D A ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA gyrA 87 GAC D N ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA gyrA 87 GAC D G ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+parC parC 80 AGC S I ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+parC parC 84 GAA E K ciprofloxacin 22633335 Target modification Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+#Indels
+ompK36 ompK36 393 - ins SG cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 393 - ins FGGD cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 552 - ins GAL cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 702 - ins L cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 702 - ins P cephalosporins 25245001 Potential contribution to increased resistance
+ompK36 ompK36 933 - ins R cephalosporins 25245001 Potential contribution to increased resistance
+acrR acrR 382 CAGGCCCAGCGCCAG del QAQRQ norfloxacin,ciprofloxacin 12936981 Potential contribution to increased resistance
+acrR acrR 432 ACCCTGAAAGAA del TLKE norfloxacin,ciprofloxacin 12936981 Potential contribution to increased resistance
+ompK37 ompK37 712 - ins TERY carbapenem 22282462 Potential contribution to increased resistance
+ompK37 ompK37 824 - ins SSTNGG carbapenem 22282462 Potential contribution to increased resistance
=====================================
debian-tests-data/db_pointfinder/klebsiella/rpsL.fsa
=====================================
@@ -0,0 +1,7 @@
+>rpsL
+AGGAGCTATTTAATGGCAACAATTAACCAGCTGGTACGCAAACCACGCGCGCGCAAAGTTGCAAAGAGCA
+ACGTGCCAGCGCTGGAAGCCTGCCCGCAGAAACGTGGCGTATGTACTCGCGTATATACCACCACTCCTAA
+GAAACCGAACTCCGCACTGCGTAAAGTTTGCCGTGTGCGTCTGACTAACGGTTTCGAAGTCACCTCCTAC
+ATCGGTGGTGAAGGTCACAACCTGCAGGAGCACTCCGTGATCCTGATCCGTGGCGGTCGTGTTAAAGACC
+TTCCGGGTGTTCGTTACCACACCGTTCGTGGTGCGCTTGACTGCTCCGGCGTTAAAGACCGTAAGCAGGC
+TCGCTCCAAGTACGGCGTGAAGCGTCCTAAGGCTTAA
=====================================
debian-tests-data/db_resfinder/aminoglycoside.fsa
=====================================
@@ -80,16 +80,6 @@ TTGGGAACCAAGCTGGTTCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACC
AAGATCCAAACGGACCCGTCGCCGAGCAACTTGCGAGCGATCCGATGCTACGAGAAAGCG
GGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATGGTCCAGCCGTGTACATGGTTCAA
ACACGCCAGGCATTCGAGCGAACACGCAGTGATGCCTAA
->aac(6')-Ib-Suzhou_1_EU085533
-ATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGCTAAATCGATCTCATATCGTCGAG
-TGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGAACAGTACTTGCCA
-AGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCGATT
-GGGTATGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGATGGTGGGAAGAAGAAACC
-GATCCAGGAGTACGCGGAATAGACCAGTTACTGGCGAATGCATCACAACTGGGCAAAGGC
-TTGGGAACCAAGCTGGTTCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACC
-AAGATCCAAACGGACCCGTCGCCGAGCAACTTGCGAGCGATCCGATGCTACGAGAAAGCG
-GGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATGGTCCAGCCGTGTACATGGTTCAA
-ACACGCCAGGCATTCGAGCGAACACGCATGGATGCCTAA
>aac(6')-Iid_1_AJ584700
ATGATTATCAGTGAGTTTGATCGTGAGAATATTGTCTTGCGAGATCAGCTTGCAGATCTT
TTAAGATTGACTTGGCCTGATGAGTATGGAACAGAGCCGATGAAAGAAGTCGAACAGTTG
@@ -3555,43 +3545,6 @@ GCGTGGCTCGACGACGCGCTGCGCCCCGCCTACCGCGCCGCGGGGTTCGAGATCCGGACG
AGCGAGATCGTGGACGGGGAGGTCCCGCACCAGACGAGCTGGGGGCAGCACCTCACGCTC
GCTTCGGGCCGGCGGACGCGGCTGCTCACGGCCGAGGCGATCGGCGGCTCGGCCAGCGCT
GCACCAGGCTAG
->ant(3'')-Ih-aac(6')-IId_1_AF453998
-ATGAGTAACGCAGTACCCGCCGAGATTTCGGTACAGCTATCACTGGCTCTCAACGCCATCGAGCGTCATC
-TGGAATCAACGTTGCTGGCCGTGCATTTGTACGGCTCTGCACTGGACGGTGGCCTGAAGCCATACAGTGA
-TATTGATTTGCTGGTTACTGTGGCTGCACAGCTCGATGAGACTGTCCGACAAGCCCTGGTCGTAGATCTC
-TTGGAAATTTCTGCCTCCCCTGGCCAAAGTGAGGCTCTCCGCGCCTTGGAAGTTACCATCGTCGTGCATG
-GTGATGTTGTCCCTTGGCGTTATCCGGCCAGACGGGAACTGCAATTCGGGGAGTGGCAGCGTAAAGACAT
-TCTTGCGGGCATCTTCGAGCCCGCCACAACCGATGTTGATCTGGCTATTCTGCTAACTAAAGTAAGGCAG
-CATAGCCTTGCATTGGCAGGTTCGGCCGCAGAGGATTTCTTTAACCCAGTTCCGGAAGGCGATCTATTCA
-AGGCATTGAGCGACACTCTGAAACTATGGAATTCGCAGCCGGATTGGGAAGGCGATGAGCGGAATGTAGT
-GCTTACCTTGTCTCGCATTTGGTACAGCGCAGCAACCGGCAAGATCGCACCGAAGGATATCGTTGCCAAC
-TGGGCAATTGAGCGTCTGCCAGATCAACATAAGCCCGTACTGCTTGAAGCCCGGCAGGCTTATCTTGGAC
-GAGGAGAAGATTGCTTGGCCTCACGCGCGGATCAGTTGGCGGCGTTCGTTCACTTCGTGAAACATGAAGC
-CACTAAATTGCTTGGTGCCATGCCAGTGATGTCTAAAACAAAGTTAGGCATCACAAAGTACAGCATCGTG
-ACCAACAGCAACGATTCCGTCACACTGCGCCTCATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGC
-TAAATCGATCTCATATCGTCGAGTGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGA
-ACAGTACTTGCCAAGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCG
-ATTGGGTATGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGATGGTGGGAAGAAGAAACCGATCCAG
-GAGTACGCGGAATAGACCAGTCACTGGCGAATGCATCACAACTGGGCAAAGGCTTGGGAACCAAGCTGGT
-TCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACCAAGATCCAAACGGACCCGTCGCCGAGC
-AACTTGCGAGCGATCCGATGCTACGAGAAAGCGGGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATG
-GTCCAGCCGTGTACATGGTTCAAACACGCCAGGCATTCGAGCGAACACGCAGTGATGCCTAA
->aph(4)-Ib_1_X03615
-GTGACACAAGAATCCCTGTTACTTCTCGACCGTATTGATTCGGATGATTCCTACGCGAGCCTGCGGAACG
-ACCAGGAATTCTGGGAGCCGCTGGCCCGCCGAGCCCTGGAGGAGCTCGGGCTGCCGGTGCCGCCGGTGCT
-GCGGGTGCCCGGCGAGAGCACCAACCCCGTACTGGTCGGCGAGCCCGACCCGGTGATCAAGCTGTTCGGC
-GAGCACTGGTGCGGTCCGGAGAGCCTCGCGTCGGAGTCGGAGGCGTACGCGGTCCTGGCGGACGCCCCGG
-TGCCGGTGCCCCGCCTCCTCGGCCGCGGCGAGCTGCGGCCCGGCACCGGAGCCTGGCCGTGGCCCTACCT
-GGTGATGAGCCGGATGACCGGCACCACCTGGCGGTCCGCGATGGACGGCACGACCGACCGGAACGCGCTG
-CTCGCCCTGGCCCGCGAACTCGGCCGGGTGCTCGGCCGGCTGCACAGGGTGCCGCTGACCGGGAACACCG
-TGCTCACCCCCCATTCCGAGGTCTTCCCGGAACTGCTGCGGGAACGCCGCGCGGCGACCGTCGAGGACCA
-CCGCGGGTGGGGCTACCTCTCGCCCCGGCTGCTGGACCGCCTGGAGGACTGGCTGCCGGACGTGGACACG
-CTGCTGGCCGGCCGCGAACCCCGGTTCGTCCACGGCGACCTGCACGGGACCAACATCTTCGTGGACCTGG
-CCGCGACCGAGGTCACCGGGATCGTCGACTTCACCGACGTCTATGCGGGAGACTCCCGCTACAGCCTGGT
-GCAACTGCATCTCAACGCCTTCCGGGGCGACCGCGAGATCCTGGCCGCGCTGCTCGACGGGGCGCAGTGG
-AAGCGGACCGAGGACTTCGCCCGCGAACTGCTCGCCTTCACCTTCCTGCACGACTTCGAGGTGTTCGAGG
-AGACCCCGCTGGATCTCTCCGGCTTCACCGATCCGGAGGAACTGGCGCAGTTCCTCTGGGGGCCGCCGGA
-CACCGCCCCCGGCGCCTGA
>aac(6')Ib-cr_3_EF210035
ATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGCTAAATCGATCTCATATCGTCGAGTGGTGGGGCG
GAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGAACAGTACTTGCCAAGCGTTTTAGCGCAAGAGTC
=====================================
debian-tests-data/db_resfinder/antibiotic_classes.txt
=====================================
@@ -4,7 +4,7 @@ Aminoglycoside Unknown Aminoglycoside Gentamicin Gentamicin c Tobramycin Strepto
Analog of d-alanine Unknown Analog of d-alanine D-Cycloserine
Beta-lactam Unknown Beta-lactam Amoxicillin Amoxicillin+Clavulanic acid Ampicillin Ampicillin+Clavulanic acid Aztreonam Cefazolin Cefepime Cefixime Cefotaxime Cefotaxime+Clavulanic acid Cefoxitin Ceftaroline Ceftazidime Ceftazidime+Avibactam Ceftriaxone Cefuroxime Cephalothin Ertapenem Imipenem Meropenem Penicillin Piperacillin Piperacillin+Tazobactam Temocillin Ticarcillin Ticarcillin+Clavulanic acid Cephalotin Piperacillin+Clavulanic acid
Diarylquinoline Unknown Diarylquinoline Bedaquiline
-Fluoroquinolone Unknown Fluoroquinolone Ciprofloxacin Nalidixic acid
+Quinolone Unknown Quinolone Ciprofloxacin Nalidixic acid Fluoroquinolone
Folate pathway antagonist Unknown Folate pathway antagonist Sulfamethoxazole Trimethoprim
Fosfomycin Unknown Fosfomycin Fosfomycin
Glycopeptide Unknown Glycopeptide Vancomycin Teicoplanin
@@ -14,7 +14,7 @@ Lincosamide Unknown Lincosamide Lincomycin Clindamycin
Macrolide Unknown Macrolide Carbomycin Azithromycin Oleandomycin Spiramycin Tylosin Telithromycin Erythromycin
Nitroimidazole Unknown Nitroimidazole Metronidazole
Oxazolidinone Unknown Oxazolidinone Linezolid
-Phenicol Unknown Phenicol Chloramphenicol Florfenicol
+Amphenicol Unknown Amphenicol Chloramphenicol Florfenicol
Pleuromutilin Unknown Pleuromutilin Tiamulin
Polymyxin Unknown Polymyxin Colistin
Pseudomonic acid Unknown Pseudomonic acid Mupirocin
@@ -27,9 +27,9 @@ Synthetic derivative of nicotinamide Unknown Synthetic derivative of nicotinamid
Tetracycline Unknown Tetracycline Tetracycline Doxycycline Minocycline Tigecycline
Thioamide Unknown Thioamide Ethionamide
Unspecified Unknown Unspecified Ethambutol
-UNDER_DEVELOPMENT Cephalosporins Carbapenem Norfloxacin Fluoroquinolone
+UNDER_DEVELOPMENT Cephalosporins Carbapenem Norfloxacin Ceftiofur
# Class Disinfectants
-Aldehydes Unknown Aldehydes Formaldehyde
-Quaternary Ammonium Compounds Unknown Quaternary Ammonium Compounds Benzylkonium Chloride Chlorhexidine Cetylpyridinium Chloride Ethidium Bromide
-Peroxides Unknown Peroxides Hydrogen peroxide
+Aldehyde Unknown Aldehyde Formaldehyde
+Quaternary Ammonium Compound Unknown Quaternary Ammonium Compound Benzylkonium Chloride Chlorhexidine Cetylpyridinium Chloride Ethidium Bromide
+Peroxide Unknown Peroxide Hydrogen peroxide
Heat Temperature
=====================================
debian-tests-data/db_resfinder/beta-lactam.fsa
=====================================
@@ -6213,22 +6213,6 @@ GCAGCGAGCATTCAGGCAGGACTGCCTGCTTCCTGGGTTGTGGGGGATAAAACCGGCAGC
GGTGACTATGGCACCACCAACGATATCGCGGTGATTTGGCCAAAAGATCGTGCGCCGCTG
ATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCAGAAAGCCGTCGCGATGTATTA
GCGTCGGCGGCTAAAATCGTCACCGACGGTTTGTAA
->blaCTX-M-63_1_EU660216
-ATGAGACATCGCGTTAAGCGGATGATGCTAATGACAACGGCCTGTATTTCGCTGTTGCTG
-GGGAGTGCGCCGCTGTATGCGCAGGCGAACGACGTTCAGCAAAAGCTGGCGGCGCTGGAG
-AAAAGCAGCGGGGGGCGGTTGGGAGTGGCGCTGATTGACACCGCCGATAACGCACAGACG
-CTCTACCGCGCCGACGAGCGCTTTGCCATGTGCAGCACCAGTAAGGTGATGGCAGCCGCG
-GCGGTGCTCAAGCAAAGTGAAACGCAAAAGAACGTGTTGAGTCAGAAGGTTGAGATTAAA
-TCCTCGGACCTGATTAACTACAATCCCATCGCTGAAAAACACGTCAACGGCACGATGACG
-CTGGCGGAATTGAGCGCCGCGGCGTTGCAGTACAGCGATAATACGGCCATGAACAAGCTG
-ATTGCCCATCTTGGGGGGCCGGATAAAGTGACGGCGTTTGCCCGTGCGATTGGGGATGAC
-ACCTTCCGGCTCGATCGTACTGAGCCGACGCTCAACACCGCGATCCCCGGCGACCCGCGC
-GATACCACCACGCCATTAGCGATGGCGCAGACGCTTCGCCATCTGACGTTGGGCAGTGCC
-TTAGGTGAAACTCAGCGTGCGCAACTGGTAACGTGGCTGAAAGGCAACACCACCGGTGCT
-GCCAGCATTCAGGCTGGGCTACCCACATCGTGGGTTGTCGGGGATAAAACCGGCAGCGGT
-GATTATGGTACGACGAATGACATCGCCGTCATCTGGCCGGAAGGGCGTGCGCCGCTTATT
-CTGGTCACTTACTTCACCCAACCGGAGCAGAAGGCAGAAAATCGTCGTGACGTGCTCGCG
-GCTGCCGCGAAAATCGTCACCGACGGTTATTAA
>blaCTX-M-64_1_AB284167
ATGGTTAAAAAATCACTGCGCCAGTTCACGCTGATGGCGACGGCAACCGTCACGCTGTTG
TTAGGAAGTGTGCCGCTGTATGCGCAAACGGCGGACGTACAGCAAAAACTTGCCGAATTA
@@ -13500,21 +13484,6 @@ CAGGAGCGGAAAGCTTATCGACTATATGTCAAATCCGGTTGGGGCATGGATGTGGAACCG
CAAGTCGGCTGGCTCACCGGCTGGGTTGAAACACCGCAGGCTGAAATCGTGGCATTTTCG
CTGAATATGCAGATGCAAAATGGTATAGATCCGGCGATCCGCCTTGAAATTTTGCAGCAG
GCTTTGGCCGAATTAGGGCTTTATCCAAAAGCTGAAGGATGA
->blaOXA-347_1_JN086160
-ATGAAAAATATTTTATTTGTAGTTTTTATTTCAATGATATTTTTATTTGTTTGCTGTAAC
-ACAACAACGAATAAAAACATAATTGAAACAGAAATTTCTGATTTTGACAAAATTTTAGAT
-AGTTTTCAAGTAAATGGTTCAATTCTAATTTATGATAACGACAAGAATACTTTTTACTCA
-AATGACTTTGATTGGGCTAAAAACGGAAAATTACCTGCATCAACATTCAAAATTCCAAAT
-TCTATAATTGCTGTTGAATTAGGCATTATTGAAAATGATACAACTATTTTAAAATGGAAT
-GGCGAGCAGAGAAAAATGGATATTTGGGAAAAAGATTTATCATTTAAAGATGCTTTTAGA
-ATTTCCTGTGTTCCTTGCTATCAGGAAATTGCAAGGAAAATCGGAACAATTAAAATGAAA
-GAATATTTAGAAAAATTTGAGTATAAAAATATGATTTTTGACAGTTTAACGATTGACAAT
-TTTTGGCTTGAAGGAAATTCAAAAATATCTCAAAAACAACAAATCGACTTTTTAAGGAAA
-TTCTATTTTTCAAAATTTCCAATTTCTGATAGGACAATAAAGATTGTCAAAAATATTATG
-GAAATTGAGCGAACTGAAAATTACATTTTAAGCGGTAAGACTGGATTAAGTTCGATAGAA
-GAAAAATATAATGGTTGGTTTGTTGGTTATGTTGAAACAAAATCTAATGTTTATTTTTTT
-GCAACAAATGTAATTCCGACAGACGGATTGAATGTTGATGATTTTATTTCATCGAGAATT
-AATGTAACAAAAAATGCGTTAAAGCAAATGAATATAATGAAATGA
>blaOXA-348_1_KF297577
ATGTATAAAAAAGCCCTTATCGTTGCAACAAGTATCCTATTTTTATCCGCCTGTTCTTCC
AATATGGTCAAACAACATCAAATACACTCTATTTCTGCCAATAAAAATTCAGAAGAAATT
@@ -30596,27 +30565,6 @@ ACGCCGATTGTTCCCCCGTTACCGCCACAGGAAAATGTGTGGATTAATAAGACCGGATCA
ACTAACGGCTTCGGTGCCTATATTGCGTTTGTTCCTGCTAAGAAGATGGGGATCGTGATG
CTGGCTAACAAAAACTACTCAATCGATCAGCGAGTGACGGTGGCGTATAAAATCCTGAGC
TCATTGGAAGGGAATAAGTAG
->blaACC-4_2_EF504260
-ATGCAGAACACATTGAAGCTGTTATCCGTGATTACCTGTCTGGCAGCAACTGTCCAAGGT
-GCTCTGGCTGCTAATATCGATGAGAGCAAAATTAAAGACACCGTTGATGACCTGATCCAG
-CCGCTGATGCAGAAGAATAATATTCCCGGTATGTCGGTCGCAGTGACCGTCAACGGTAAA
-AACTACATTTATAACTATGGGTTAGCGGCAAAACAGCCTCAGCAGCCGGTTACGGAAAAT
-ACGTTATTTGAAGTGGGTTCGCTGAGTAAAACGTTTGCTGCCACCTTGGCGTCCTATGCG
-CAGGTGAGCGGTAAGCTGTCTTTGGATCAAAGCGTTAGCCATTACGTTCCAGAGTTGCGT
-GGCAGCAGCTTTGACCACGTTAGCGTACTCAATGTGGGCACGCATACCTCAGGCCTACAG
-CTATTTATGCCGGAAGATATTAAAAATACCACACAGCTGATGGCTTATCTAAAAGCATGG
-AAACCTGCCGATGCGGCTGGAACCCATCGCGTTTATTCCAATATCGGTACTGGTTTGCTA
-GGGATGATTGCGGCGAAAAGTCTGGGTGTGAGCTATGAAGATGCGATTGAGAAAACCCTC
-CTTCCTCAGTTAGGCATGCATCACAGCTACTTGAAGGTTCCGGCTGACCAGATGGAAAAC
-TATGCGTGGGGCTACAACAAGAAAGATGAGCCAGTGCACGGGAATATGGAGATTTTGGGT
-AACGAAGCTTATGGTATCAAAACCACCTCCAGCGACTTGTTACGCTACGTGCAAGCCAAT
-ATGGGGCAGTTAAAGCTTGATGCTAATGCCAAGATGCAACAGGCTCTGACAGCCACCCAC
-ACCGGCTATTTCAAATCGGGTGAGATTACTCAGGATCTGATGTGGGAGCAGCTGCCATAT
-CCGGTTTCTCTGCCGAATTTGCTCACCGGTAACGATATGGCGATGACGAAAAGCGTGGCT
-ACGCCGATTGTTCCGCCGTTACCGCCACAGGAAAATGTGTGGATTAATAAGACCGGATCA
-ACTAACGGCTTCGGTGCCTATATTGCGTTTGTTCCTGCTAAGAAGATGGGGATCGTGATG
-CTGGCTAACAAAAACTACTCAATCGATCAGCGAGTGACGGTGGCGTATAAAATCCTGAGC
-TCATTGGAAGGGAATAAGTAG
>blaACC-4_1_KM087831
ATGCGTAAAAAAATGCAGAACACATTGAAGCTGTTATCCGTGATTACCTGTCTGGCAGCA
ACTGTCCAAGGTGCTCTGGCTGCTAATATCGATGAGAGCAAAATTAAAGACACCGTTGAT
@@ -31926,21 +31874,6 @@ ATCGAGCAGCAGGGCGATGCCGCGCTGTATGCCAAGACCGGCGTCGCCACCGAATACCAG
CCGGAGATCGGTTGGTGGGTCGGCTGGGTGGAGCGTGCGGGGCATGTCTATGCATTCGCG
CTGAACATCGACATGCCGCGCGAGGGCGATATGGCCAAGCGCATTCCGCTGGGCAAGCAG
TTGATGCGGGCGCTCGAGGTGTGGCCGGCACCGTGA
->blaOXA-60a_1_AY662675
-ATGCTGTCTCGCTACTCGAAGACCCTCGCGTTTGCCGTGGTGGCCTGCACGCTCGCAATA
-AGCACCGCCACCGCTCATGCCGAGCTGGTCGTGCGCAATGACCTCAAGCGCGTGTTCGAC
-GACGCCGGCGTCTCCGGCACCTTCGTGCTGATGGACATCACCGCCGACCGTACCTATGTC
-GTCGATCCGGCGCGTGCCGCGCGGAGCATCCATCCGGCTTCGACGTTCAAGATTCCGAAC
-AGCCTGATCGCCTTCGACACCGGGGCCGTGCGCGACGATCAGGAAGTGCTGCCCTACGGC
-GGCAAGCCGCAGCCTTACGAGCAGTGGGAGCACGACATGGCGTTACCCGAGGCGATTCGC
-CTGTCGGCCGTGCCGATCTATCAGGAAGTCGCGCGCCGCGTTGGCTTCGAGCGCATGCAG
-GCTTATGTCGATGCGTTCGACTACGGCAATCGCCAGCTCGGCAGCGCGATCGACCAGTTC
-TGGCTGCGTGGCCCGCTGGAGATTTCCGCTTTCGAAGAAGCACGCTTCACCAGCCGCATG
-GCGCTCAAGCAGTTGCCGGTGAAGCCGCGCACGTGGGACATGGTCCAGCGCATGCTGTTG
-ATCGAGCAGCAGGGCGATGCCGCGCTATATGCCAAGACCGGCGTCGCCACCGAATACCAG
-CCGGAGATCGGTTGGTGGGCCGGCTGGGTGGAGCGTGCGGGGCATGTCTATGCATTCGCG
-CTGAACATCGACATGCCGCGCGAGGGCGATATGGCCAAGCGCATTCCGCTGGGCAAGCAG
-TTGATGCGGGCGCTCGAGGTGTGGCCGGCACCGTGA
>blaCARB-1_1_AF313471
ATGAAGTTTTTATTGGCATTTTCGCTTTTAATACCATCCGTGGTTTTTGCAAGTAGTTCA
AAGTTTCAGCAAGTTGAACAAGACGTTAAGGCAATTGAAGTTTCTCTTTCTGCTCGTATA
@@ -31989,22 +31922,6 @@ CCGGCGGGATGGAACATTGCGGATCGCTCAGGTGCTGGCGGATTTGGTGCTCGGAGTATT
ACAGCAGTTGTGTGGAGTGAGCATCAAGCCCCAATTATTGTGAGCATCTATCTAGCTCAA
ACACAGGCTTCAATGGCAGAGCGAAATGATGCGATTGTTAAAATTGGTCATTCAATTTTT
GACGTTTATACATCACAGTCGCGCTGA
->blaCARB-4_1_FJ785525
-ATGAAGCTTTTACTGGTATTTTCGCTTTTAATACCGTCTATGGTGTTTGCAAATAGTTCA
-AAGTTTCAACAGGTTGAACAAGATGCTAAGGTAATTGAAGCATCTCTTTCTGCGCATATA
-GGGATTTCTGTTCTTGATACTCAAACTGGAGAGTATTGGGATTACAATGGCAATCAGCGT
-TTTCCTTTGACAAGTACTTTTAAAACAATAGCTTGTGCTAAATTATTATATGATGCTGAG
-CAAGGGGAAATAAACCCTAAGAGTACAATTGAGATCAAAAAAGCAGATCTTGTGACCTAT
-TCTCCCGTAATAGAAAAGCAAGTAGGACAAGCAATAACGCTCGATGATGCGTGTTTTGCA
-ACTATGACGACAAGTGATAATGCAGCAGCAAATATCATCCTAAATGCCCTAGGAGGTCCT
-GAAAGCGTGACGGATTTTCTAAGACAAATCGGAGATAAAGAAACCCGTCTAGACCGTATT
-GAACCTGAATTAAATGAAGGCAAGCTTGGTGATTTGAGGGATACGACAACTCCTAATGCA
-ATAGTGAATACTTTAAATGAATTATTATTTGGTTCCACATTGTCTCAAGATGGCCAGAAA
-AAATTAGAGTATTGGATGGTGAATAATCAAGTCACTGGTAATTTATTGCGGTCAGTATTG
-CCAGAGGGATGGAATATTGCGGATCGTTCAGGTGCTGGCGGATTTGGTGCTCGGAGTATT
-ACAGCCGTTGTTTGGAGTGAAGCTCAATCCCCAATCATAGTTAGTATCTATCTAGCGCAA
-ACAGAGGCTTCAATAGCAGATCGAAATGATGCAATTGTTAAAATTGGTCGTTCAATTTTT
-GAAGTTTATTCATCACAATCGCGTTGA
>blaCARB-5_1_AF135373
ATGAACGTACGTAAACACAAGGCTAGTTTTTTTAGCGTAGTAATTACTTTTTTATGTCTC
ACGCTATCATTAAATGCTAATGCAACAGACTCAGTACTTGAAGCGGTTACCAATGCTGAA
@@ -32797,6 +32714,18 @@ ATAATATTGTTGTTTGGCTACCTAATGAAAAGATATTGTTTGGAGGTTGTTTTGTAAAAAGCCTTAAGAA
TAAAAATTTAGGTTATACAGGCGACGCAAATATTAGTGAATGGCCAAACTCTATGCAAAAAGTCATTAAT
CGTTATCCTGATGCCAAATTAGTTGTTCCAGGACATGGTGAAGTCGGAGATGTTAGCTTACTGAAGCATA
CTCAAGCATTAGCTTTGTCTGCAGCGGCCTCTAACAAGAAAATCAACAAGGACTAA
+>blaVMB-2_1_MN865127
+ATGAATTTTCTGATAAAAAATATTCTGCTCATTACTCTTTTTGTTCCTTTTGTAACAGCAGCAAACAATA
+CAGACACTAAAACGCTGGAGGTTAAACAATTAACCGATAATATCTATCAGCATATCTCATATAAACATGT
+TGAGCCTTGGGGGTTTATTGGCGCGTCTGGCTTAATTGTAGTCGATGGAGATGCGGCATACCTGATTGAC
+ACTCCTTGGACGACCAAAGCAACCAATCAACTTATTGAATGGATTGAAGATAGAGGTCTCGTACTAAAAA
+GCGCAATAGTAACTCACTTTCATGAAGATGCGAGTGGTGATTTACCACTTTTAAATGATTTAAAAGTTAA
+CACTTATGCCACTTCACTCACTAATCAACTTCTTAAACTCAATAACAAAGAAATTTCGAATACTGAAATA
+TCGAGCAATGAACTCAAAATTTTCAACGGCATTGCGACAGTGTATTATCCTGGCCCAGGCCATACTGAAG
+ATAACATCGTTGTTTGGTTACCGAATGAAAAGCTATTATTTGGCGGTTGCTTTGTTAAAAGCCTCCGTAA
+TAAAAGTCTAGGTTACACTGGAGATGCAAATATAGGCGAATGGTCGAACTCTATTCAAAGAGTGCTGCAA
+CGCTATCCAGATATAGTCACTGTAGTGCCTGGGCATGGTCAGGTTGGAGACGTTAGTTTACTCCTTCATA
+CACAAAAATTAGCATCATCCGATAAGACTTCTGACAAATAG
>blaLMB-1_1_MH475146
ATGACGTTAGCTAAAAGTTTTCGCTGTTTTTGCCTTGTAACTACATTAAGTTCGATGGCTATGCTGGCCG
GTTGCGGCGGCACAGCCCCGGTAACAGTATTAAGCCCACCGCCAGCAGACTGGGTTAACAGCTGTAAAGA
@@ -32995,48 +32924,6 @@ GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
GTTGTTCACTGA
->blaBEL3_1_GQ202694
-ATGAAACTGCTGCTCTACCCGTTATTGCTGTTCCTTGTCATTCCAGCCTTTGCCCAGGCGGACTTTGAAC
-ATGCCATTTCAGATCTTGAGGCGCACAATCAAGCCAAGATCGGAGTGGCCCTAGTTAGTGAAAATGGCAA
-CCTGATTCAAGGGTATCGTGCGAATGAAAGGTTCGCGATGTGCTCAACTTTCAAGTTGCCGTTGGCCGCT
-CTTGTTCTGAGTCGCATTGACGCTGGGGAAGAGAATCCTGAGCGCAAGCTTCATTACGATTCCGCGTTCC
-TTGAAGAGTACGCCCCAGCCGCAAAACGGTATGTGGCAACTGGATATATGACTGTAACTGAGGCAATTCA
-ATCCGCCCTCCAACTCAGCGACAATGCCGCAGCTAACCTGCTGTTAAAAGAGGTTGGCGGCCCACCTTTA
-TTGACAAAGTATTTCCGTAGCCTGGGTGATAAAGTAAGTCGCCTTGATCGTATTGAATCGACTTTGAACA
-CCAATACGCCCGGCGATGAAAGAGATACAACAACGCCCATGTCCATGGCACAGACTGTGTCAAAGCTGAT
-TTTTGGAGACACGTTGACATATAAATCCAAGGGGCAGCTAAGGCGATTACTCATCGGCAATCAGACCGGG
-GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
-GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
-TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
-GTTGTTCACTGA
->blaBEL2_1_FJ666063
-ATGAAACTGCTGCTCTACCCGTTATTGCTGTTCCTTGTCATTCCAGCCTTTGCCCAGGCGGACTTTGAAC
-ATGCCATTTCAGATCTTGAGGCGCACAATCAAGCCAAGATCGGAGTGGCCCTAGTTAGTGAAAATGGCAA
-CCTGATTCAAGGGTATCGTGCGAATGAAAGGTTCGCGATGTGCTCAACTTTCAAGTTGCCGTTGGCCGCT
-CTTGTTCTGAGTCGCATTGACGCTGGGGAAGAGAATCCTGAGCGCAAGCTTCATTACGATTCCGCGTTCC
-TTGAAGAGTACGCCCCAGCCGCAAAACGGTATGTGGCAACTGGATATATGACTGTAACTGAGGCAATTCA
-ATCCGCCCTCCAACTCAGCGACAATGCCGCAGCTAACCTGCTGTTAAAAGAGGTTGGCGGCCCACCTTTA
-TTGACAAAGTATTTCCGTAGCCTGGGTGATAAAGTAAGTCGCTTTGATCGTATTGAACCGACTTTGAACA
-CCAATACGCCCGGCGATGAAAGAGATACAACAACGCCCATGTCCATGGCACAGACTGTGTCAAAGCTGAT
-TTTTGGAGACACGTTGACATATAAATCCAAGGGGCAGCTAAGGCGATTACTCATCGGCAATCAGACCGGG
-GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
-GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
-TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
-GTTGTTCACTGA
->blaBEL1_1_KF745070
-ATGAAACTGCTGCTCTACCCGTTATTGCTGTTCCTTGTCATTCCAGCCTTTGCCCAGGCGGACTTTGAAC
-ATGCCATTTCAGATCTTGAGGCGCACAATCAAGCCAAGATCGGAGTGGCCCTAGTTAGTGAAAATGGCAA
-CCTGATTCAAGGGTATCGTGCGAATGAAAGGTTCGCGATGTGCTCAACTTTCAAGTTGCCGTTGGCCGCT
-CTTGTTCTGAGTCGCATTGACGCTGGGGAAGAGAATCCTGAGCGCAAGCTTCATTACGATTCCGCGTTCC
-TTGAAGAGTACGCCCCAGCCGCAAAACGGTATGTGGCAACTGGATATATGACTGTAACTGAGGCAATTCA
-ATCCGCCCTCCAACTCAGCGACAATGCCGCAGCTAACCTGCTGTTAAAAGAGGTTGGCGGCCCACCTTTA
-TTGACAAAGTATTTCCGTAGCCTGGGTGATAAAGTAAGTCGCCTTGATCGTATTGAACCGACTTTGAACA
-CCAATACGCCCGGCGATGAAAGAGATACAACAACGCCCATGTCCATGGCACAGACTGTGTCAAAGCTGAT
-TTTTGGAGACACGTTGACATATAAATCCAAGGGGCAGCTAAGGCGATTACTCATCGGCAATCAGACCGGG
-GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
-GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
-TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
-GTTGTTCACTGA
>blaCARB-4_1_U14749
ATGAAGCTTTTACTGGTATTTTCGCTTTTAATACCGTCTATGGTGTTTGCAAATAGTTCAAAGTTTCAAC
AGGTTGAACAAGATGCTAAGGTAATTGAAGCATCTCTTTCTGCGCATATAGGGATTTCTGTTCTTGATAC
@@ -33051,21 +32938,3 @@ GTCACTGGTAATTTATTGCGGTCAGTATTGCCAGAGGGATGGAATATTGCGGATCGTTCAGGTGCTGGCG
GATTTGGTGCTCGGAGTATTACAGCCGTTGTTTGGAGTGAAGCTCAATCCCCAATCATAGTTAGTATCTA
TCTAGCGCAAACAGAGGCTTCAATAGCAGATCGAAATGATGCAATTGTTAAAATTGGTCGTTCAATTTTT
GAAGTTTATTCATCACAATCGCGTTGA
->blaCMY-150_2_NG_060513
-ATGATGAAAAAATCGATATGCTGCGCACTGCTGCTGACAGCCTCTTTCTCCACGTTTGCTGCCGCAAAAA
-CAGAACAACAAATTGCCGATATCGTTAACCGCACCATCACACCACTGATGCAGGAGCAGGCTATTCCGGG
-TATGGCCGTGGCGATTATCTACGAGGGGAAACCTTATTACTTTACCTGGGGTAAAGCCGATATCGCCAAT
-AACCACCCAGTCACGCAGCAAACGCTGTTTGAGCTAGGGTCGGTCAGTAAGACGTTTAACGGCGTGTTGG
-GCGGCGACGCTATCGCCCGCGGCGAAATTAAGCTCAGCGATCCGGTCACGAAATACTGGCCAGAACTGAC
-AGGCAAACAGTGGCGGGGTATCAGCCTGCTGCACTTAGCCACCTATACAGCGGGTGGCCTGCCGCTGCAG
-ATCCCCGATGACGTTACGGATAAAGCCGAATTACTGCGCTTTTATCAAAACTGGCAACCACAATGGACTC
-CGGGCGCTAAGCGTCTTTACGCTAACTCCAGCATTGGTCTGTTTGGTGCGCTGGTGGTAAAACATTCAGG
-TATGAGCTACGAAGAGGCAATGACCAGACGCGTCCTGCAACCATTAAAACTGGCGCATACCTGGATTACG
-GTTCCGCAAAGCGAACAAAAAAATTATGCCTGGGGCTATCGCGAAGGGAAGCCTGTACACGTTTCTCCGG
-GGCAACTTGACGCCGAAGCCTATGGCGTGAAATCCAGCGTTATCGATATGGCCCGCTGGGTTCAGGCCAA
-CATGGACGCCAGCCTCGTTCAGGAGAAAACGCTCCAGCAGGGCATTGAGCTTGCGCAGTCTCGCTACTGG
-CGTATTGGTGATATGTACCAGGGATTAGGCTGGGAGATGCTGAACTGGCCGCTGAAAGCTGATTCGATCA
-TCAACGGCAGCGACAGCAAAGTGGCATTGGCAGCGCTTCCCGCCGTTGAGGTAAACCCGCCAGCACCTGC
-CGTGAAAGCCTCATGGGTGCATAAAACAGGATCCACAGGCGGATTTGGCAGCTACGTTGCCTTCGTTCCA
-GAAAAAAACCTTGGCATCGTAATGTTGGCAAACAAAAGCTACCCCAACCCGGCTCGCGTCGAGGCGGCCT
-GGCGCATTCTTGAAAAACTGCAATAA
=====================================
debian-tests-data/db_resfinder/history.txt
=====================================
@@ -1,1625 +1,1674 @@
-# ResFinder Database History
-#
-# This is the history file of ResFinderDB summarizing commits adding, deleting
-# and modifying gene entries based on the Bitbucket commits
-# https://bitbucket.org/genomicepidemiology/resfinder_db/commits/
-# dating back to 2018/01/01.
-#
-# First column informs about the date of the commit.
-# Second column covers the type of change (Added, Deleted, Modified)
-# followed by the implicated gene entries.
-# Note: The 'Modified' category covers a modification to an existing gene entry.
-# If an arrow (->) is written, the header of the gene entry has been updated
-# including possible sequence modifications.
-#
-#
+# ResFinder Database History
+#
+# This is the history file of ResFinderDB summarizing commits adding, deleting
+# and modifying gene entries based on the Bitbucket commits
+# https://bitbucket.org/genomicepidemiology/resfinder_db/commits/
+# dating back to 2018/01/01.
+#
+# First column informs about the date of the commit.
+# Second column covers the type of change (Added, Deleted, Modified)
+# followed by the implicated gene entries.
+# Note: The 'Modified' category covers a modification to an existing gene entry.
+# If an arrow (->) is written, the header of the gene entry has been updated
+# including possible sequence modifications.
+#
+#
#Date Commit
+2021-08-04 Added:
+ blaVMB-2_1_MN865127
2021-04-13 Modified:
- dfrA19_2_EU855787 -> dfrA19_2_EU855687
+ dfrA19_2_EU855787 -> dfrA19_2_EU855687
2021-03-11 Added:
- Gar_1_NG_070891
- mcr-1.26_1_NG_068217
- mcr-1.27_1_NG_068218
- fosL1_1_MN464149
- erm(50)_1_LC473083
- catT_1_MW030510
- qnrB89_1_MT544491
- qnrB91_1_AP023150
- qnrB90_1_MG182074
+ Gar_1_NG_070891
+ mcr-1.26_1_NG_068217
+ mcr-1.27_1_NG_068218
+ fosL1_1_MN464149
+ erm(50)_1_LC473083
+ catT_1_MW030510
+ qnrB89_1_MT544491
+ qnrB91_1_AP023150
+ qnrB90_1_MG182074
2021-03-09 Added:
- aac(3)-IIa_6_CP023555
- blaCMY-150_2_NG_060513
- blaCARB-4_1_U14749
- mupA_1_X75439
- mupA_2_GU237136
- mupB_1_JQ231224
- blaBEL1_1_KF745070
- blaBEL2_1_FJ666063
- blaBEL3_1_GQ202694
- blaBEL4_1_KX388629
- blaBKC_1_KP689347
- blaIMI-5_1_KX858825
- Deleted:
- blaGPA-1_1_AJ877225
- blaIMI-5_1_KT599915
+ aac(3)-IIa_6_CP023555
+ blaCMY-150_2_NG_060513
+ blaCARB-4_1_U14749
+ mupA_1_X75439
+ mupA_2_GU237136
+ mupB_1_JQ231224
+ blaBEL1_1_KF745070
+ blaBEL2_1_FJ666063
+ blaBEL3_1_GQ202694
+ blaBEL4_1_KX388629
+ blaBKC_1_KP689347
+ blaIMI-5_1_KX858825
+ Deleted:
+ blaGPA-1_1_AJ877225
+ blaIMI-5_1_KT599915
2021-02-19 Added:
- formA_1_X73835
- qacA_1_AB566410
- qacB_1_AB566412
- qacC_1_M37889
- qacD_1_M37888
- qacE_1_X68232
- qacF_1_Z17326
- qacG_1_EU622633
- qacH_1_FJ172381
- qacA4_1_MK046687
- qacJ_1_NG_048046
- qacZ_1_NG_061384
- sitABCD_1_AY598030
- OqxA_1_EU370913
- OqxB_1_EU370913
- ClpL_1_CP023753
+ formA_1_X73835
+ qacA_1_AB566410
+ qacB_1_AB566412
+ qacC_1_M37889
+ qacD_1_M37888
+ qacE_1_X68232
+ qacF_1_Z17326
+ qacG_1_EU622633
+ qacH_1_FJ172381
+ qacA4_1_MK046687
+ qacJ_1_NG_048046
+ qacZ_1_NG_061384
+ sitABCD_1_AY598030
+ OqxA_1_EU370913
+ OqxB_1_EU370913
+ ClpL_1_CP023753
2020-10-28 Added:
- grdA_1_QJX10702
+ grdA_1_QJX10702
2020-10-20 Deleted:
- blaCMY-150_2
- Modified:
- blaLMB-1_1_MH475146
+ blaCMY-150_2
+ Modified:
+ blaLMB-1_1_MH475146
2020-10-05 Added:
- Cfr(D)_1_NG_067192
- Cfr(E)_1_NG_070225
+ Cfr(D)_1_NG_067192
+ Cfr(E)_1_NG_070225
2020-08-28 Added:
- ant(3'')-Ih-aac(6')-IId_1_AF453998
- aph(4)-Ib_1_X03615
- aac(6')Ib-cr_3_EF210035
- blaIMI-4_1_NG_049167
- ARR-8_1_KC199968
+ ant(3'')-Ih-aac(6')-IId_1_AF453998
+ aph(4)-Ib_1_X03615
+ aac(6')Ib-cr_3_EF210035
+ blaIMI-4_1_NG_049167
+ ARR-8_1_KC199968
2020-06-02 Added:
- blaVMB-1_1_MN719868
- blaLMB-1_1_MH475146
- blaCMY-150_2_NG_060513
- blaPAU-1_1_MH053445
- blaKPC-41_1_MK497255
- blaKPC-36_1_MH593787
- blaKPC-40_1_NG_064726:101-98
- blaKPC-37_1_MH718730
- blaKPC-38_1_MK098861
- blaKPC-39_1_MK118771
- blaKLUC-3_1_JX185316
- blaKLUC-4_1_JX185317
- blaKLUC-2_1_EF057432
- mcr-10_1_MN179494
- tet(X6)_1_MN507533
- dfrA36_1_CP038791
+ blaVMB-1_1_MN719868
+ blaLMB-1_1_MH475146
+ blaCMY-150_2_NG_060513
+ blaPAU-1_1_MH053445
+ blaKPC-41_1_MK497255
+ blaKPC-36_1_MH593787
+ blaKPC-40_1_NG_064726:101-98
+ blaKPC-37_1_MH718730
+ blaKPC-38_1_MK098861
+ blaKPC-39_1_MK118771
+ blaKLUC-3_1_JX185316
+ blaKLUC-4_1_JX185317
+ blaKLUC-2_1_EF057432
+ mcr-10_1_MN179494
+ tet(X6)_1_MN507533
+ dfrA36_1_CP038791
2020-02-13 Added:
- dfrA34_1_JYRF01000065
+ dfrA34_1_JYRF01000065
2020-02-11 Added:
- tet(X5)_1_CP040912
+ tet(X5)_1_CP040912
2020-02-10 Added:
- blaLAP-1_1_EF026092
- blaLAP-2_1_EU159120
+ blaLAP-1_1_EF026092
+ blaLAP-2_1_EU159120
2020-02-10 Added:
- qnrS10_1_JN836269
- qnrS11_1_JQ269335
- qnrS12_1_MKQI01000097
- qnrS13_1_LUYD01000008
+ qnrS10_1_JN836269
+ qnrS11_1_JQ269335
+ qnrS12_1_MKQI01000097
+ qnrS13_1_LUYD01000008
2019-10-01 Added:
- tet(X3)_1_MK134375
- tet(X4)_1_MK134376
+ tet(X3)_1_MK134375
+ tet(X4)_1_MK134376
2019-04-26 Added:
- mcr-9_1_NZ_NAAN01000063.1
+ mcr-9_1_NZ_NAAN01000063.1
2019-02-20 Added:
- fusC_1_KF527883
- Modified:
- fusB_1_AM292600 -> fusB_1_AY373761
- fusB_3_JF777505 -> fusB_2_JF777505
+ fusC_1_KF527883
+ Modified:
+ fusB_1_AM292600 -> fusB_1_AY373761
+ fusB_3_JF777505 -> fusB_2_JF777505
2019-01-22 Deleted:
- blaCARB-4_1_U14749
- Modified:
- blaCARB-2_1_M69058
- blaCARB-3_1_S46063
- Added:
- blaCARB-14_1_JQ364968
- blaCARB-16_1_HF953351
- blaCARB-17_1_KJ934265
- blaCARB-18_1_KJ934266
- blaCARB-19_1_KJ934267
- blaCARB-20_1_NG_054946
- blaCARB-21_1_NG_048724
- blaCARB-22_1_JYNG01000059
- blaCARB-23_1_NG_048726
- blaCARB-24_1_BK008907
- blaCARB-25_1_BK008888
- blaCARB-26_1_BK008904
- blaCARB-27_1_NG_048730
- blaCARB-28_1_BK008906
- blaCARB-29_1_BK008905
- blaCARB-30_1_NG_048734
- blaCARB-31_1_NG_048735
- blaCARB-32_1_NG_048736
- blaCARB-33_1_BK008903
- blaCARB-34_1_NG_048738
- blaCARB-35_1_BK008900
- blaCARB-36_1_LHBD01000022
- blaCARB-38_1_BK008898
- blaCARB-40_1_BK008889
- blaCARB-41_1_BK008890
- blaCARB-42_1_NG_048745
- blaCARB-43_1_NG_048746
- blaCARB-44_1_JTGS01000066
- blaCARB-45_1_JTGR01000061
- blaCARB-46_1_NG_048749
- blaCARB-49_1_KX599396
- blaCARB-50_1_NG_052478
- blaFRI-1_1_KT192551
- blaFRI-2_1_KX620467
- blaFRI-3_1_KY524440
- blaFRI-4_1_NG_055267
- blaFRI-5_1_MH208723
+ blaCARB-4_1_U14749
+ Modified:
+ blaCARB-2_1_M69058
+ blaCARB-3_1_S46063
+ Added:
+ blaCARB-14_1_JQ364968
+ blaCARB-16_1_HF953351
+ blaCARB-17_1_KJ934265
+ blaCARB-18_1_KJ934266
+ blaCARB-19_1_KJ934267
+ blaCARB-20_1_NG_054946
+ blaCARB-21_1_NG_048724
+ blaCARB-22_1_JYNG01000059
+ blaCARB-23_1_NG_048726
+ blaCARB-24_1_BK008907
+ blaCARB-25_1_BK008888
+ blaCARB-26_1_BK008904
+ blaCARB-27_1_NG_048730
+ blaCARB-28_1_BK008906
+ blaCARB-29_1_BK008905
+ blaCARB-30_1_NG_048734
+ blaCARB-31_1_NG_048735
+ blaCARB-32_1_NG_048736
+ blaCARB-33_1_BK008903
+ blaCARB-34_1_NG_048738
+ blaCARB-35_1_BK008900
+ blaCARB-36_1_LHBD01000022
+ blaCARB-38_1_BK008898
+ blaCARB-40_1_BK008889
+ blaCARB-41_1_BK008890
+ blaCARB-42_1_NG_048745
+ blaCARB-43_1_NG_048746
+ blaCARB-44_1_JTGS01000066
+ blaCARB-45_1_JTGR01000061
+ blaCARB-46_1_NG_048749
+ blaCARB-49_1_KX599396
+ blaCARB-50_1_NG_052478
+ blaFRI-1_1_KT192551
+ blaFRI-2_1_KX620467
+ blaFRI-3_1_KY524440
+ blaFRI-4_1_NG_055267
+ blaFRI-5_1_MH208723
2018-12-14 Deleted:
- aac(6')-aph(2'')_1_KF652095
- aac(3)-IIa_1_CP023555
- aadA2_1_X68227
- aph(3')-VIj_1_KU922928
- blaOXA-144_1_FJ617207
- msr(A)_3_M81802
- lmr(B)_1_X62867
- Modified:
- aadA8b_1_AM040708 -> aadA8b_2_AM040708
- ant(3'')-Ih-aac(6')-IId_1_AF453998 -> ant(3'')-Ii-aac(6')-IId_1_AF453998
- rmtf_1_JQ808129 -> rmtF_1_JQ808129
- rmtG_1_KJ004567 -> rmtG_1_JX486113
- spc_1_X02588 -> ant(9)-Ia_1_X02588
- aac(3)-IIa_1_CP023555 -> aac(3)-IIIb_2_LLLC01000048
- aac(3)-IIa_2_AY138987
- blaCMY-8_1_AF167990 -> blaCMY-8_1_AB201268
- blaCTX-M-35_1_AB176534 -> blaCTX-M-35_1_AB176532
- blaOXA-48_2_AY236073 -> blaOXA-48_1_AY236073
- blaOXA-144_2_FJ872530 -> blaOXA-144_1_FJ872530
- blaOXA-234_1_NG050607 -> blaOXA-234_1_NG_050607
- blaIMP-5_1_JF810083 -> blaIMP-5_1_AF290912
- blaIMP-12_3_AJ420864 -> blaIMP-12_1_AJ420864
- blaOXA-252_1_NG050608 -> blaOXA-252_1_NG_050608
- blaCTX-M-27_1_AY156923
- msr(E)_4_EU294228 -> msr(E)_1_FR751518
- lnu(B)_1_JQ861959 -> lnu(B)_2_JQ861959
- erm(B)_25_X72021 -> erm(B)_23_X72021
- catB4_1_AF322577 -> catB3_2_U13880
- qnrB32_2_JN173054 -> qnrB32_1_JN173054
- tet(O)_4_AIOQ01000025 -> tet(O/32/O)_4_AIOQ01000025
- tet(S)_4_AY534326 -> tet(S/M)_2_AY534326
- tet(O/32/O)_7_FP929050 -> tet(O/32/O)_5_FP929050
- tet(W/32/O)_5_AM710605 -> tet(W/32/O)_4_AM710605
- Added:
- aac(3)-IIa_3_X13543
- aac(3)-IIa_4_L22613
- aac(3)-IIa_5_FJ012882
- aac(3)-IV_1_DQ241380
- aac(3)-VIa_2_NC_009838
- aph(3')-Ib_2_AJ744860
- ant(9)-Ia_2_M69221
- aadA24_1_DQ677333
- aadA8b_1_AY139603
- aadA2b_1_D43625
- aac(6')-Ii_1_L12710
- aac(3)-XI_1_CTEG01000046
- aac(3)-VIII_1_AB211959
- aac(3)-VIII_2_AJ843080
- aac(3)-VIII_3_AJ748131
- kmr_1_ENA_ACB88605
- aadD_2_M19465
- blaOXA-20_2_AF024602
- blaOXA-60d_1_AY664506
- blaOXA-60c_1_AY664505
- blaOXA-60b_1_AY664504
- blaOXA-60a_1_AY662675
- erm(U)_1_NG_047843
- lsa(E)_1_JX560992
- mph(K)_1_NC_000964
+ aac(6')-aph(2'')_1_KF652095
+ aac(3)-IIa_1_CP023555
+ aadA2_1_X68227
+ aph(3')-VIj_1_KU922928
+ blaOXA-144_1_FJ617207
+ msr(A)_3_M81802
+ lmr(B)_1_X62867
+ Modified:
+ aadA8b_1_AM040708 -> aadA8b_2_AM040708
+ ant(3'')-Ih-aac(6')-IId_1_AF453998 -> ant(3'')-Ii-aac(6')-IId_1_AF453998
+ rmtf_1_JQ808129 -> rmtF_1_JQ808129
+ rmtG_1_KJ004567 -> rmtG_1_JX486113
+ spc_1_X02588 -> ant(9)-Ia_1_X02588
+ aac(3)-IIa_1_CP023555 -> aac(3)-IIIb_2_LLLC01000048
+ aac(3)-IIa_2_AY138987
+ blaCMY-8_1_AF167990 -> blaCMY-8_1_AB201268
+ blaCTX-M-35_1_AB176534 -> blaCTX-M-35_1_AB176532
+ blaOXA-48_2_AY236073 -> blaOXA-48_1_AY236073
+ blaOXA-144_2_FJ872530 -> blaOXA-144_1_FJ872530
+ blaOXA-234_1_NG050607 -> blaOXA-234_1_NG_050607
+ blaIMP-5_1_JF810083 -> blaIMP-5_1_AF290912
+ blaIMP-12_3_AJ420864 -> blaIMP-12_1_AJ420864
+ blaOXA-252_1_NG050608 -> blaOXA-252_1_NG_050608
+ blaCTX-M-27_1_AY156923
+ msr(E)_4_EU294228 -> msr(E)_1_FR751518
+ lnu(B)_1_JQ861959 -> lnu(B)_2_JQ861959
+ erm(B)_25_X72021 -> erm(B)_23_X72021
+ catB4_1_AF322577 -> catB3_2_U13880
+ qnrB32_2_JN173054 -> qnrB32_1_JN173054
+ tet(O)_4_AIOQ01000025 -> tet(O/32/O)_4_AIOQ01000025
+ tet(S)_4_AY534326 -> tet(S/M)_2_AY534326
+ tet(O/32/O)_7_FP929050 -> tet(O/32/O)_5_FP929050
+ tet(W/32/O)_5_AM710605 -> tet(W/32/O)_4_AM710605
+ Added:
+ aac(3)-IIa_3_X13543
+ aac(3)-IIa_4_L22613
+ aac(3)-IIa_5_FJ012882
+ aac(3)-IV_1_DQ241380
+ aac(3)-VIa_2_NC_009838
+ aph(3')-Ib_2_AJ744860
+ ant(9)-Ia_2_M69221
+ aadA24_1_DQ677333
+ aadA8b_1_AY139603
+ aadA2b_1_D43625
+ aac(6')-Ii_1_L12710
+ aac(3)-XI_1_CTEG01000046
+ aac(3)-VIII_1_AB211959
+ aac(3)-VIII_2_AJ843080
+ aac(3)-VIII_3_AJ748131
+ kmr_1_ENA_ACB88605
+ aadD_2_M19465
+ blaOXA-20_2_AF024602
+ blaOXA-60d_1_AY664506
+ blaOXA-60c_1_AY664505
+ blaOXA-60b_1_AY664504
+ blaOXA-60a_1_AY662675
+ erm(U)_1_NG_047843
+ lsa(E)_1_JX560992
+ mph(K)_1_NC_000964
2018-09-10 Modified:
- mcr-1_1_KP347127 -> mcr-1.1_1_KP347127
- mcr-2_1_LT598652 -> mcr-2.1_1_LT598652
- mcr-2.2_1_NG055496 -> mcr-2.2_1_MF176239
- mcr-3.2_1_NG055523 -> mcr-3.2_1_NMWW01000143
- mcr-3.3_1_NG055783 -> mcr-3.3_1_MF495680
- mcr-3.4_1_NG055492 -> mcr-3.4_1_FLXA01000011
- mcr-3.5_1_MF463699 -> mcr-3.5_1_MF489760
- mcr-3.8_1_MF598079 -> mcr-3.8_1_MF598078
- mcr-3.10_1_MG214533 -> mcr-3.10_1_MG214531
- mcr-4.2_1_MG459157 -> mcr-4.2_1_MG822663
- mcr-4.2_2_MG026621 -> mcr-4.3_1_MG026621
- mcr-4.3_1_ERS1801979 -> mcr-4.6_1_MH423812
- mcr-5_1_KY807921 -> mcr-5.1_1_KY807921
+ mcr-1_1_KP347127 -> mcr-1.1_1_KP347127
+ mcr-2_1_LT598652 -> mcr-2.1_1_LT598652
+ mcr-2.2_1_NG055496 -> mcr-2.2_1_MF176239
+ mcr-3.2_1_NG055523 -> mcr-3.2_1_NMWW01000143
+ mcr-3.3_1_NG055783 -> mcr-3.3_1_MF495680
+ mcr-3.4_1_NG055492 -> mcr-3.4_1_FLXA01000011
+ mcr-3.5_1_MF463699 -> mcr-3.5_1_MF489760
+ mcr-3.8_1_MF598079 -> mcr-3.8_1_MF598078
+ mcr-3.10_1_MG214533 -> mcr-3.10_1_MG214531
+ mcr-4.2_1_MG459157 -> mcr-4.2_1_MG822663
+ mcr-4.2_2_MG026621 -> mcr-4.3_1_MG026621
+ mcr-4.3_1_ERS1801979 -> mcr-4.6_1_MH423812
+ mcr-5_1_KY807921 -> mcr-5.1_1_KY807921
2018-08-23 Deleted:
- strA_1_M96392
+ strA_1_M96392
2018-08-08 Modified:
- blaIMP-64_1_KX949735
- Added:
- blaSHV-1b-b_1_DQ166783
+ blaIMP-64_1_KX949735
+ Added:
+ blaSHV-1b-b_1_DQ166783
2018-07-31 Update and correct beta-lactam resistance db for genes:
- NDM
- VIM
- KPC
- IMP
- TEM
- SHV
- CTX-M
- CMY
- ACC
- DHA
+ NDM
+ VIM
+ KPC
+ IMP
+ TEM
+ SHV
+ CTX-M
+ CMY
+ ACC
+ DHA
2018-07-23 Added:
- bla-OXA-368_1_KT736121
- blaOXA-336_1_KF048907
- blaOXA-337_1_KF048908
- blaOXA-338_1_KF048909
- blaOXA-339_1_KF048911
- blaOXA-340_1_KF048912
- blaOXA-341_1_KF048913
- blaOXA-342_1_KF048915
- blaOXA-343_1_KF048916
- blaOXA-344_1_KF048917
- blaOXA-345_1_KF048918
- blaOXA-346_1_KF048919
- blaOXA-347_1_ACWG01000053
- blaOXA-361_1_KF460531
- blaOXA-362_1_KF460532
- blaOXA-363_1_KF460533
- blaOXA-364_1_JX306689
- blaOXA-365_1_KF885217
- blaOXA-366_1_KP050485
- blaOXA-370_1_KJ488943
- blaOXA-373_1_HG931732
- blaOXA-374_1_KF986255
- blaOXA-375_1_KF986256
- blaOXA-376_1_KF986257
- blaOXA-377_1_KF986258
- blaOXA-378_1_KF986259
- blaOXA-379_1_KF986260
- blaOXA-380_1_KF986261
- blaOXA-381_1_KJ135344
- blaOXA-382_1_KJ135345
- blaOXA-383_1_KF986262
- blaOXA-384_1_KF986263
- blaOXA-385_1_KF986253
- blaOXA-386_1_KF986254
- blaOXA-387_1_KJ173478
- blaOXA-388_1_KJ135343
- blaOXA-389_1_KJ135346
- blaOXA-390_1_KJ135342
- blaOXA-391_1_KJ427797
- blaOXA-392_1_AB901044
- blaOXA-395_1_AY306133
- blaOXA-396_1_AY306134
- blaOXA-397_1_KM087865
- blaOXA-398_1_KM087842
- blaOXA-400_1_KJ780078
- blaOXA-401_1_KJ780076
- blaOXA-402_1_JX865391
- blaOXA-403_1_KJ920337
- blaOXA-404_1_KJ920338
- blaOXA-405_1_KM589641
- blaOXA-406_1_KJ584915
- blaOXA-407_1_KJ584916
- blaOXA-408_1_KJ584917
- blaOXA-409_1_KJ584918
- blaOXA-410_1_KJ584919
- blaOXA-411_1_KJ584920
- blaOXA-412_1_KJ584921
- blaOXA-413_1_KJ584922
- blaOXA-414_1_KJ584914
- blaOXA-415_1_KJ865754
- blaOXA-416_1_KP264119
- blaOXA-417_1_KM220587
- blaOXA-418_1_KJ997966
- blaOXA-420_1_AB983359
- blaOXA-421_1_KM401566
- blaOXA-422_1_KM433671
- blaOXA-423_1_KM433672
- blaOXA-424_1_KM588352
- blaOXA-425_1_KM588353
- blaOXA-426_1_KM588354
- blaOXA-429_1_KM979376
- blaOXA-430_1_KM979377
- blaOXA-431_1_KM979378
- blaOXA-432_1_KM979379
- blaOXA-433_1_KM979380
- blaOXA-435_1_KP144324
- blaOXA-436_1_KT959105
- blaOXA-437_1_KP410856
- blaOXA-438_1_KP410734
- blaOXA-439_1_KP727573
- blaOXA-440_1_KP727574
- blaOXA-441_1_JX865394
- blaOXA-442_1_KP844571
- blaOXA-443_1_LC030178
- blaOXA-444_1_CP010800
- blaOXA-450_1_KR061502
- blaOXA-451_1_KR061504
- blaOXA-452_1_KR061505
- blaOXA-453_1_KR061507
- blaOXA-454_1_LC037981
- blaOXA-455_1_KP903885
- blaOXA-457_1_KP903887
- blaOXA-458_1_KP903888
- blaOXA-459_1_KP903889
- blaOXA-460_1_KR061508
- blaOXA-461_1_KR061509
- blaOXA-464_1_KU721146
- blaOXA-470_1_KR182163
- blaOXA-471_1_EU086833
- blaOXA-472_1_KR182165
- blaOXA-473_1_KR182166
- blaOXA-474_1_KR182167
- blaOXA-475_1_KR182168
- blaOXA-476_1_KR182169
- blaOXA-477_1_KR182170
- blaOXA-478_1_KR182171
- blaOXA-479_1_KR182172
- blaOXA-480_1_KR872296
- blaOXA-482_1_KP264124
- blaOXA-483_1_KP264125
- blaOXA-484_1_KR401105
- blaOXA-485_1_LLNM01000004
- blaOXA-486_1_AY597426
- blaOXA-488_1_CP017969
- blaOXA-489_1_CP013733
- blaOXA-490_1_KU721147
- blaOXA-491_1_KU721148
- blaOXA-493_1_KU739135
- blaOXA-494_1_AY597430
- blaOXA-496_1_KT200608
- blaOXA-497_1_LKJZ01000136
- blaOXA-499_1_KT964029
- blaOXA-500_1_JMNQ01000002
- blaOXA-501_1_KU167110
- blaOXA-502_1_KU167111
- blaOXA-503_1_KU16710
- blaOXA-505_1_KU531433
- blaOXA-506_1_KU571454
- blaOXA-507_1_KU551305
- blaOXA-508_1_KU596972
- blaOXA-509_1_KU692025
- blaOXA-510_1_JX865393
- blaOXA-511_1_KU710720
- blaOXA-512_1_KU726870
- blaOXA-513_1_KU323972
- blaOXA-514_1_KU866382
- blaOXA-515_1_KU866383
- blaOXA-516_1_KU871391
- blaOXA-517_1_KU878974
- blaOXA-519_1_KX349732
- blaOXA-520_1_KX388630
- blaOXA-521_1_KX462701
- blaOXA-522_1_KX599408
- blaOXA-523_1_KX599401
- blaOXA-524_1_KX599402
- blaOXA-525_1_KX599406
- blaOXA-526_1_KX599409
- blaOXA-527_1_KX599404
- blaOXA-528_1_KX599407
- blaOXA-529_1_KX599405
- blaOXA-530_1_KX599398
- blaOXA-531_1_KX599400
- blaOXA-532_1_KX609247
- blaOXA-533_1_KX668472
- blaOXA-534_1_KX714285
- blaOXA535_1_KX828709
- blaOXA-536_1_KX859240
- blaOXA-537_1_KX360747
- blaOXA-538_1_KX827284
- blaOXA-539_1_KY094077
- blaOXA-540_1_KJ138219
- blaOXA-541_1_FM179467
- blaOXA-290_1_APOK01000044
- blaOXA-293_1_NG_050610
- blaOXA-10_1_J03427
- blaOXA-14_1_KJ420612
- blaOXA-50_1_AY306130
- blaOXA-51_1_DQ385606
- blaOXA-85_1_JANA01000064
- blaOXA-121_1_EU255290
- blaOXA-122_1_EU255291
- blaOXA-123_1_EU255292
- blaOXA-124_1_EU255293
- blaOXA-125_1_EU255294
- blaOXA-126_1_EU255295
- blaOXA-226_1_FJ617207
- blaOXA-233_1_KJ657570
- blaOXA-234_1_NG050607
- blaZ_3_CP000732
- blaZ_4_X04121
- blaZ_6_AP003139
- blaZ_7_AP004832
- blaZ_8_HE993884
- blaZ_9_DQ269019
- blaZ_10_FR823292
- blaZ_12_M15195
- blaOXA-545_1_KY674541
- blaOXA-546_1_KY682756
- blaOXA-547_1_KY684124
- blaOXA-548_1_KY682750
- blaOXA-549_1_KY682751
- blaOXA-550_1_KY682752
- blaOXA-551_1_KY682753
- blaOXA-552_1_KY682754
- blaOXA-553_1_KY682755
- blaOXA-554_1_KY126221
- blaOXA-555_1_KY126224
- blaOXA-556_1_KY126231
- blaOXA-557_1_KY126232
- blaOXA-558_1_KY126234
- blaOXA-559_1_KY126237
- blaOXA-560_1_KY126238
- blaOXA-561_1_KY126240
- blaOXA-562_1_KY126241
- blaOXA-563_1_KY767021
- blaOXA-564_1_KY767022
- blaOXA-565_1_KY883665
- blaOXA-566_1_MF099636
- blaOXA-312_1_KF057029
- blaOXA-313_1_KF057030
- blaOXA-314_1_KF057031
- blaOXA-315_1_KF057032
- blaOXA-316_1_KF057033
- blaOXA-317_1_KF057034
- blaOXA-300_1_APPK01000054
- blaOXA-301_1_APQG01000050
- blaOXA-304_1_APSC01000007
- blaOXA-305_1_APPF01000021
- blaOXA-280_1_APPZ01000001
- blaOXA-281_1_APON01000041
- blaOXA-282_1_APQS01000019
- blaOXA-283_1_AYHO01000005
- blaOXA-284_1_APRU01000004
- blaOXA-285_1_APRY01000059
- blaOXA-276_1_APPI01000013
- blaOXA-277_1_APPQ01000011
- blaOXA-267_1_APQH01000006
- blaOXA-268_1_APOE01000008
- blaOXA-269_1_APQJ01000007
- blaOXA-270_1_APQM01000006
- blaOXA-271_1_APQO01000006
- blaOXA-272_1_LSAL01000001
- blaOXA-273_1_APQN01000012
- blaOXA-246_1_EU886980
- blaOXA-252_1_NG050608
- blaOXA-259_1_KF057028
- blaOXA-260_1_APOR01000009
- blaOXA-261_1_APQV01000009
- blaOXA-262_1_APRA01000005
- blaOXA-263_1_APQY01000006
- blaOXA-264_1_APQQ01000012
- blaOXA-265_1_APQR01000003
- blaOXA-193_1_CP013032
- blaOXA-102_1_NZ_LWGP01000001
- blaOXA-103_1_APQF01000011
- blaZ_13_KF471116
- blaZ_14_JBAG01000015
- blaZ_15_JAZQ01000018
- blaZ_16_JBTH01000015
- blaZ_17_JDDF01000008
- blaZ_18_JBQW01000016
- blaZ_19_JBMK01000007
- blaZ_20_JBVX01000014
- blaZ_21_JGQH01000014
- blaZ_22_JCHI01000035
- blaZ_23_JBND01000015
- blaZ_24_JBLQ01000018
- blaZ_25_JBKK01000017
- blaZ_26_JBJP01000007
- blaZ_27_JDGZ01000043
- blaZ_28_JDYO01000009
- blaZ_29_JDXN01000019
- blaZ_30_JGUQ01000012
- blaZ_31_JIFU01000008
- blaZ_32_JINH01000005
- blaZ_33_JIXQ01000012
- blaZ_34_JJAO01000008
- blaZ_35_JIVZ01000012
- blaZ_36_JITV01000006
- blaZ_37_JIFD01000012
- blaZ_38_NZ_JEMM01000040
- blaZ_39_JHTU01000073
- blaZ_40_NZ_AZBT01000050
- blaZ_42_CCEE01000006
- blaZ_43_NZ_CAVU010000015
- blaZ_44_NZ_JWJJ01000015
- blaZ_45_CP010941
- blaZ_46_CP010944
- blaZ_47_NZ_JYGF01000020
- blaZ_48_CFPA01000022
- blaZ_49_CVLS01000543
- blaZ_50_KR230047
- blaZ_51_NZ_JVWO01000108
- blaZ_52_NZ_JVWM01000127
- blaZ_53_NZ_JUXQ01000001
- blaZ_54_NZ_JVRB01000003
- blaZ_55_NZ_JVLY01000044
- blaZ_56_NZ_JUMU01000089
- blaZ_57_NZ_JURP01000126
- blaZ_58_NZ_JUUA01000057
- blaZ_59_NZ_JVBT01000063
- blaZ_60_NZ_JVML01000111
- blaZ_61_NZ_JVAT01000021
- blaZ_62_NZ_JVOH01000023
- blaZ_63_NZ_JUMX01000103
- blaZ_64_CSJB01000017
- blaZ_65_CSEV01000005
- blaZ_66_CSGM01000014
- blaZ_67_NZ_CTTL01000039
- blaZ_68_NZ_CUHK01000055
- blaZ_69_NZ_CUHB01000033
- blaZ_70_NZ_CUEK01000047
- blaZ_71_NZ_CUGR01000082
- blaZ_72_NZ_CUHG01000035
- blaZ_73_CYNA01000004
- blaZ_74_CZWI01000159
- blaZ_75_LNTF01000008
- blaZ_76_FFOR01000002
- blaZ_77_FGNH01000009
- blaZ_78_KU607301
- blaZ_79_KU607584
- blaZ_80_KU607855
- blaZ_81_FGJZ01000020
- blaZ_82_FGSJ01000003
- blaZ_83_FGWO01000019
- blaZ_84_FHDH01000010
- blaZ_85_NZ_FHDT01000016
- blaZ_87_NZ_LRNC01000042
- blaZ_88_FKTX01000011
- blaZ_89_FKPS01000007
- blaZ_90_FKVU01000010
- blaZ_91_FKQH01000022
- blaZ_92_FKWG01000001
- blaZ_93_FKQA01000038
- blaZ_94_LYRW01000005
- blaZ_95_MAJJ01000071
- blaZ_96_LNDI01000019
- blaZ_97_FMOK01000003
- blaZ_98_LTEF01000041
- blaZ_99_LTNH01000008
- blaZ_100_LTMH01000008
- blaZ_101_LTLP01000099
- blaZ_102_MLQA01000023
- blaZ_103_FQSJ01000009
- blaZ_104_FQHI01000006
- blaZ_105_FQJS01000007
- blaZ_106_FQHX01000011
- blaZ_107_FQDM01000011
- blaZ_108_FQPO01000005
- blaZ_41_AENR01000015
- blaZ_86_AIZE01000023
- blaZ_109_AOAS01000022
- blaZ_110_AJCZ01000013
- blaZ_111_AJCN01000010
- blaZ_112_AKGL01000044
- blaZ_113_AHVS01000008
- blaZ_114_NC_013379
- blaZ_115_FN433596
- blaZ_116_NC_013348
- blaZ_117_ACHE01000004
- blaZ_118_NC_004461
- blaZ_119_NZ_CANQ01000029
- blaZ_120_NZ_ALWG01000005
- blaZ_121_AIWM01000014
- blaZ_122_NZ_AJGE01000057
- blaZ_123_NC_013653
- blaZ_124_NC_013944
- blaZ_125_CP003194
- blaZ_126_NC_013374
- blaZ_127_ACFR01000018
- blaZ_128_GQ900471
- blaZ_129_CP003194
- blaZ_130_AHKZ01000073
- blaZ_131_GQ900485
- blaZ_132_AHVO01000010
- blaZ_133_AIDT01000014
- blaZ_134_NZ_AJGE01000047
- blaZ_135_AB811795
- blaZ_136_NZ_ALWE01000009
- blaZ_81_FGJZ01000020
- blaZ_138_CP003979
- Modified:
- blaOXA-307_1_NG050611 -> blaOXA-307_1_NG_050611
- blaOXA-287_1_NG050609 -> blaOXA-287_1_NG_050609
- blaOXA-293_1_NG050610 -> blaOXA-289_1_APRM01000005
- blaOXA-466_1_KR061501
- blaOXA-308_1_NG049603 -> blaOXA-308_1_APPN01000080
- blaOXA-306_1_NG049602 -> blaOXA-306_1_APSB01000022
- blaOXA-303_1_NG049599 -> blaOXA-303_1_APSD01000035
- blaOXA-302_1_NG049598 -> blaOXA-302_1_APRT01000004
- blaOXA-299_1_NG049594 -> blaOXA-299_1_APQD01000016
- blaOXA-298_1_NG049593 -> blaOXA-298_1_APSA01000003
- blaOXA-1_1_J02967 -> blaOXA-1_1_HQ170510
- blaOXA-2_1_GQ466184 -> blaOXA-2_2_GQ466184
- blaOXA-2_2_AY444814 -> blaOXA-2_1_DQ112222
- blaOXA-5_1_X58272 -> blaOXA-306_1_NG049602
- blaOXA-10_2_EU886981 -> blaOXA-9_1_KQ089875
- blaOXA-17_2_DQ902344 -> blaOXA-17_1_DQ902344
- blaOXA-18_1_EU503121 -> blaOXA-18_1_U85514
- blaOXA-20_1_AF024602 -> blaOXA-20_1_AY307114
- blaOXA-21_2_DQ993182 -> blaOXA-21_1_AB626885
- blaOXA-23_1_HQ700358 -> blaOXA-23_1_AY795964
- blaOXA-28_1_FJ374756 -> blaOXA-28_1_AF231133
- blaOXA-46_1_AJ969237 -> blaOXA-46_1_AF317511
- blaOXA-56_1_AY660529 -> blaOXA-56_1_AY445080
- blaOXA-60_1_AY664506 -> blaOXA-60_1_AF525303
- blaOXA-66_4_FJ360530 -> blaOXA-66_1_AY750909
- blaOXA-69_1_HM564339 -> blaOXA-69_1_AY859527
- blaOXA-71_1_AY859528 -> blaOXA-71_1_AY750913
- blaOXA-72_1_GU199039 -> blaOXA-72_1_AY739646
- blaOXA-82_2_EU019536 -> blaOXA-82_1_DQ987479
- blaOXA-69_1_HM564339 -> blaOXA-89_1_DQ445683
- blaOXA-98_1_AM279652 -> blaOXA-98_1_EU255288
- blaOXA-107_1_EF650033 -> blaOXA-107_1_LAVJ01000082
- blaOXA-114_1_HM368376 -> blaOXA-114g_1_HM368376
- blaOXA-114_2_HM368375 -> blaOXA-114f_1_HM368375
- blaOXA-114_3_HM104634 -> blaOXA-114e_1_HM104634
- blaOXA-114_4_HM104633 -> blaOXA-114d_1_HM104633
- blaOXA-114_5_HM056041 -> blaOXA-114c_1_HM056041
- blaOXA-114_6_HM056040 -> blaOXA-114a_1_EU188842
- blaOXA-119_1_AY139598 -> blaOXA-119_1_DQ767903
- blaOXA-120_1_HE963768 -> blaOXA-120_1_EU255289
- blaOXA-127_1_EU255296
- blaOXA-129_1_AM932669 -> blaOXA-129_1_FJWZ01000025
- blaOXA-136_1_EU086833 -> blaOXA-136_1_EU086831
- blaOXA-137_1_EU086836 -> blaOXA-137_1_EU086834
- blaOXA-142_1_EU358785 -> blaOXA-142_1_LC169567
- blaOXA-146_1_FJ194460 -> blaOXA-146_1_FJ194494
- blaOXA-181_1_HM992946 -> blaOXA-181_1_CM004561
- blaOXA-204_1_JQ809466 -> blaOXA-204_1_KP027885
- blaOXA-207_1_JQ838185 -> blaOXA-207_1_LLFS01000355
- blaOXA-208_1_FR853176 -> blaOXA-208_1_KF305665
- blaOXA-224_1_JN596991 -> blaOXA-224_1_JN412067
- blaOXA-243_1_JX206446 -> blaOXA-243_1_AFRQ01000031
- blaOXA-244_1_JX438000 -> blaOXA-244_1_KP659189
- blaZ_32_AP004832 -> blaZ_1_CP000704
- blaZ_34_AP003139 -> blaZ_2_CP000731
- blaZ_35_AJ302698 -> blaZ_5_AJ302698
- blaZ_36_AJ400722 -> blaZ_11_AJ400722
- blaOXA-297_1_NG049592 -> blaOXA-297_1_APRR01000006
- blaOXA-296_1_NG049591 -> blaOXA-296_1_APOH01000009
- blaOXA-295_1_NG049590 -> blaOXA-295_1_APRW01000016
- blaOXA-294_1_NG049589 -> blaOXA-294_1_APPC01000015
- blaOXA-292_1_NG049588 -> blaOXA-292_1_APRO01000007
- blaOXA-291_1_NG049587 -> blaOXA-291_1_APRL01000010
- blaOXA-288_1_NG049585 -> blaOXA-288_1_APRN01000033
- blaOXA-286_1_NG049584 -> blaOXA-286_1_APOI01000030
- blaOXA-279_1_NG049576 -> blaOXA-279_1_APOM01000058
- blaOXA-275_1_NG049572 -> blaOXA-275_1_APPJ01000001
- blaOXA-274_1_NG049571 -> blaOXA-274_1_APOS01000038
- blaOXA-266_1_NG049562 -> blaOXA-266_1_APPO01000008
- blaOXA-151_1_KP771979 -> blaOXA-151_1_CP009553
- Deleted:
- blaOXA-504_1_KT355710
- blaOXA-491_1_JAIV01000087
- blaOXA-464_1_JAIX01000028
- blaOXA-2_1_DQ310703
- blaOXA-9_2_JF703130
- blaOXA-10_1_HM175875
- blaOXA-12_1_U10251
- blaOXA-14_1_L38523
- blaOXA-50_1_AY306135
- blaOXA-50_2_AY306133
- blaOXA-50_3_AY306132
- blaOXA-50_3_AY306130
- blaOXA-51_1_AJ309734
- blaOXA-51_3_EU255296
- blaOXA-51_4_EU255295
- blaOXA-51_5_EU255294
- blaOXA-51_6_EU255293
- blaOXA-51_7_EU255292
- blaOXA-51_8_EU255291
- blaOXA-51_9_EU255290
- blaOXA-51_11_EU255288
- blaOXA-58_14_EU107364
- blaOXA-60_1_AY664506
- blaOXA-60_2_AY664505
- blaOXA-60_3_AY664504
- blaOXA-60_4_AY662675
- blaOXA-82_1_GQ352402
- blaOXA-85_1_AY227054
- blaOXA-117_2_EU220745
- blaOXA-136_2_EU086832
- blaOXA-436_1_KT959103
+ bla-OXA-368_1_KT736121
+ blaOXA-336_1_KF048907
+ blaOXA-337_1_KF048908
+ blaOXA-338_1_KF048909
+ blaOXA-339_1_KF048911
+ blaOXA-340_1_KF048912
+ blaOXA-341_1_KF048913
+ blaOXA-342_1_KF048915
+ blaOXA-343_1_KF048916
+ blaOXA-344_1_KF048917
+ blaOXA-345_1_KF048918
+ blaOXA-346_1_KF048919
+ blaOXA-347_1_ACWG01000053
+ blaOXA-361_1_KF460531
+ blaOXA-362_1_KF460532
+ blaOXA-363_1_KF460533
+ blaOXA-364_1_JX306689
+ blaOXA-365_1_KF885217
+ blaOXA-366_1_KP050485
+ blaOXA-370_1_KJ488943
+ blaOXA-373_1_HG931732
+ blaOXA-374_1_KF986255
+ blaOXA-375_1_KF986256
+ blaOXA-376_1_KF986257
+ blaOXA-377_1_KF986258
+ blaOXA-378_1_KF986259
+ blaOXA-379_1_KF986260
+ blaOXA-380_1_KF986261
+ blaOXA-381_1_KJ135344
+ blaOXA-382_1_KJ135345
+ blaOXA-383_1_KF986262
+ blaOXA-384_1_KF986263
+ blaOXA-385_1_KF986253
+ blaOXA-386_1_KF986254
+ blaOXA-387_1_KJ173478
+ blaOXA-388_1_KJ135343
+ blaOXA-389_1_KJ135346
+ blaOXA-390_1_KJ135342
+ blaOXA-391_1_KJ427797
+ blaOXA-392_1_AB901044
+ blaOXA-395_1_AY306133
+ blaOXA-396_1_AY306134
+ blaOXA-397_1_KM087865
+ blaOXA-398_1_KM087842
+ blaOXA-400_1_KJ780078
+ blaOXA-401_1_KJ780076
+ blaOXA-402_1_JX865391
+ blaOXA-403_1_KJ920337
+ blaOXA-404_1_KJ920338
+ blaOXA-405_1_KM589641
+ blaOXA-406_1_KJ584915
+ blaOXA-407_1_KJ584916
+ blaOXA-408_1_KJ584917
+ blaOXA-409_1_KJ584918
+ blaOXA-410_1_KJ584919
+ blaOXA-411_1_KJ584920
+ blaOXA-412_1_KJ584921
+ blaOXA-413_1_KJ584922
+ blaOXA-414_1_KJ584914
+ blaOXA-415_1_KJ865754
+ blaOXA-416_1_KP264119
+ blaOXA-417_1_KM220587
+ blaOXA-418_1_KJ997966
+ blaOXA-420_1_AB983359
+ blaOXA-421_1_KM401566
+ blaOXA-422_1_KM433671
+ blaOXA-423_1_KM433672
+ blaOXA-424_1_KM588352
+ blaOXA-425_1_KM588353
+ blaOXA-426_1_KM588354
+ blaOXA-429_1_KM979376
+ blaOXA-430_1_KM979377
+ blaOXA-431_1_KM979378
+ blaOXA-432_1_KM979379
+ blaOXA-433_1_KM979380
+ blaOXA-435_1_KP144324
+ blaOXA-436_1_KT959105
+ blaOXA-437_1_KP410856
+ blaOXA-438_1_KP410734
+ blaOXA-439_1_KP727573
+ blaOXA-440_1_KP727574
+ blaOXA-441_1_JX865394
+ blaOXA-442_1_KP844571
+ blaOXA-443_1_LC030178
+ blaOXA-444_1_CP010800
+ blaOXA-450_1_KR061502
+ blaOXA-451_1_KR061504
+ blaOXA-452_1_KR061505
+ blaOXA-453_1_KR061507
+ blaOXA-454_1_LC037981
+ blaOXA-455_1_KP903885
+ blaOXA-457_1_KP903887
+ blaOXA-458_1_KP903888
+ blaOXA-459_1_KP903889
+ blaOXA-460_1_KR061508
+ blaOXA-461_1_KR061509
+ blaOXA-464_1_KU721146
+ blaOXA-470_1_KR182163
+ blaOXA-471_1_EU086833
+ blaOXA-472_1_KR182165
+ blaOXA-473_1_KR182166
+ blaOXA-474_1_KR182167
+ blaOXA-475_1_KR182168
+ blaOXA-476_1_KR182169
+ blaOXA-477_1_KR182170
+ blaOXA-478_1_KR182171
+ blaOXA-479_1_KR182172
+ blaOXA-480_1_KR872296
+ blaOXA-482_1_KP264124
+ blaOXA-483_1_KP264125
+ blaOXA-484_1_KR401105
+ blaOXA-485_1_LLNM01000004
+ blaOXA-486_1_AY597426
+ blaOXA-488_1_CP017969
+ blaOXA-489_1_CP013733
+ blaOXA-490_1_KU721147
+ blaOXA-491_1_KU721148
+ blaOXA-493_1_KU739135
+ blaOXA-494_1_AY597430
+ blaOXA-496_1_KT200608
+ blaOXA-497_1_LKJZ01000136
+ blaOXA-499_1_KT964029
+ blaOXA-500_1_JMNQ01000002
+ blaOXA-501_1_KU167110
+ blaOXA-502_1_KU167111
+ blaOXA-503_1_KU16710
+ blaOXA-505_1_KU531433
+ blaOXA-506_1_KU571454
+ blaOXA-507_1_KU551305
+ blaOXA-508_1_KU596972
+ blaOXA-509_1_KU692025
+ blaOXA-510_1_JX865393
+ blaOXA-511_1_KU710720
+ blaOXA-512_1_KU726870
+ blaOXA-513_1_KU323972
+ blaOXA-514_1_KU866382
+ blaOXA-515_1_KU866383
+ blaOXA-516_1_KU871391
+ blaOXA-517_1_KU878974
+ blaOXA-519_1_KX349732
+ blaOXA-520_1_KX388630
+ blaOXA-521_1_KX462701
+ blaOXA-522_1_KX599408
+ blaOXA-523_1_KX599401
+ blaOXA-524_1_KX599402
+ blaOXA-525_1_KX599406
+ blaOXA-526_1_KX599409
+ blaOXA-527_1_KX599404
+ blaOXA-528_1_KX599407
+ blaOXA-529_1_KX599405
+ blaOXA-530_1_KX599398
+ blaOXA-531_1_KX599400
+ blaOXA-532_1_KX609247
+ blaOXA-533_1_KX668472
+ blaOXA-534_1_KX714285
+ blaOXA535_1_KX828709
+ blaOXA-536_1_KX859240
+ blaOXA-537_1_KX360747
+ blaOXA-538_1_KX827284
+ blaOXA-539_1_KY094077
+ blaOXA-540_1_KJ138219
+ blaOXA-541_1_FM179467
+ blaOXA-290_1_APOK01000044
+ blaOXA-293_1_NG_050610
+ blaOXA-10_1_J03427
+ blaOXA-14_1_KJ420612
+ blaOXA-50_1_AY306130
+ blaOXA-51_1_DQ385606
+ blaOXA-85_1_JANA01000064
+ blaOXA-121_1_EU255290
+ blaOXA-122_1_EU255291
+ blaOXA-123_1_EU255292
+ blaOXA-124_1_EU255293
+ blaOXA-125_1_EU255294
+ blaOXA-126_1_EU255295
+ blaOXA-226_1_FJ617207
+ blaOXA-233_1_KJ657570
+ blaOXA-234_1_NG050607
+ blaZ_3_CP000732
+ blaZ_4_X04121
+ blaZ_6_AP003139
+ blaZ_7_AP004832
+ blaZ_8_HE993884
+ blaZ_9_DQ269019
+ blaZ_10_FR823292
+ blaZ_12_M15195
+ blaOXA-545_1_KY674541
+ blaOXA-546_1_KY682756
+ blaOXA-547_1_KY684124
+ blaOXA-548_1_KY682750
+ blaOXA-549_1_KY682751
+ blaOXA-550_1_KY682752
+ blaOXA-551_1_KY682753
+ blaOXA-552_1_KY682754
+ blaOXA-553_1_KY682755
+ blaOXA-554_1_KY126221
+ blaOXA-555_1_KY126224
+ blaOXA-556_1_KY126231
+ blaOXA-557_1_KY126232
+ blaOXA-558_1_KY126234
+ blaOXA-559_1_KY126237
+ blaOXA-560_1_KY126238
+ blaOXA-561_1_KY126240
+ blaOXA-562_1_KY126241
+ blaOXA-563_1_KY767021
+ blaOXA-564_1_KY767022
+ blaOXA-565_1_KY883665
+ blaOXA-566_1_MF099636
+ blaOXA-312_1_KF057029
+ blaOXA-313_1_KF057030
+ blaOXA-314_1_KF057031
+ blaOXA-315_1_KF057032
+ blaOXA-316_1_KF057033
+ blaOXA-317_1_KF057034
+ blaOXA-300_1_APPK01000054
+ blaOXA-301_1_APQG01000050
+ blaOXA-304_1_APSC01000007
+ blaOXA-305_1_APPF01000021
+ blaOXA-280_1_APPZ01000001
+ blaOXA-281_1_APON01000041
+ blaOXA-282_1_APQS01000019
+ blaOXA-283_1_AYHO01000005
+ blaOXA-284_1_APRU01000004
+ blaOXA-285_1_APRY01000059
+ blaOXA-276_1_APPI01000013
+ blaOXA-277_1_APPQ01000011
+ blaOXA-267_1_APQH01000006
+ blaOXA-268_1_APOE01000008
+ blaOXA-269_1_APQJ01000007
+ blaOXA-270_1_APQM01000006
+ blaOXA-271_1_APQO01000006
+ blaOXA-272_1_LSAL01000001
+ blaOXA-273_1_APQN01000012
+ blaOXA-246_1_EU886980
+ blaOXA-252_1_NG050608
+ blaOXA-259_1_KF057028
+ blaOXA-260_1_APOR01000009
+ blaOXA-261_1_APQV01000009
+ blaOXA-262_1_APRA01000005
+ blaOXA-263_1_APQY01000006
+ blaOXA-264_1_APQQ01000012
+ blaOXA-265_1_APQR01000003
+ blaOXA-193_1_CP013032
+ blaOXA-102_1_NZ_LWGP01000001
+ blaOXA-103_1_APQF01000011
+ blaZ_13_KF471116
+ blaZ_14_JBAG01000015
+ blaZ_15_JAZQ01000018
+ blaZ_16_JBTH01000015
+ blaZ_17_JDDF01000008
+ blaZ_18_JBQW01000016
+ blaZ_19_JBMK01000007
+ blaZ_20_JBVX01000014
+ blaZ_21_JGQH01000014
+ blaZ_22_JCHI01000035
+ blaZ_23_JBND01000015
+ blaZ_24_JBLQ01000018
+ blaZ_25_JBKK01000017
+ blaZ_26_JBJP01000007
+ blaZ_27_JDGZ01000043
+ blaZ_28_JDYO01000009
+ blaZ_29_JDXN01000019
+ blaZ_30_JGUQ01000012
+ blaZ_31_JIFU01000008
+ blaZ_32_JINH01000005
+ blaZ_33_JIXQ01000012
+ blaZ_34_JJAO01000008
+ blaZ_35_JIVZ01000012
+ blaZ_36_JITV01000006
+ blaZ_37_JIFD01000012
+ blaZ_38_NZ_JEMM01000040
+ blaZ_39_JHTU01000073
+ blaZ_40_NZ_AZBT01000050
+ blaZ_42_CCEE01000006
+ blaZ_43_NZ_CAVU010000015
+ blaZ_44_NZ_JWJJ01000015
+ blaZ_45_CP010941
+ blaZ_46_CP010944
+ blaZ_47_NZ_JYGF01000020
+ blaZ_48_CFPA01000022
+ blaZ_49_CVLS01000543
+ blaZ_50_KR230047
+ blaZ_51_NZ_JVWO01000108
+ blaZ_52_NZ_JVWM01000127
+ blaZ_53_NZ_JUXQ01000001
+ blaZ_54_NZ_JVRB01000003
+ blaZ_55_NZ_JVLY01000044
+ blaZ_56_NZ_JUMU01000089
+ blaZ_57_NZ_JURP01000126
+ blaZ_58_NZ_JUUA01000057
+ blaZ_59_NZ_JVBT01000063
+ blaZ_60_NZ_JVML01000111
+ blaZ_61_NZ_JVAT01000021
+ blaZ_62_NZ_JVOH01000023
+ blaZ_63_NZ_JUMX01000103
+ blaZ_64_CSJB01000017
+ blaZ_65_CSEV01000005
+ blaZ_66_CSGM01000014
+ blaZ_67_NZ_CTTL01000039
+ blaZ_68_NZ_CUHK01000055
+ blaZ_69_NZ_CUHB01000033
+ blaZ_70_NZ_CUEK01000047
+ blaZ_71_NZ_CUGR01000082
+ blaZ_72_NZ_CUHG01000035
+ blaZ_73_CYNA01000004
+ blaZ_74_CZWI01000159
+ blaZ_75_LNTF01000008
+ blaZ_76_FFOR01000002
+ blaZ_77_FGNH01000009
+ blaZ_78_KU607301
+ blaZ_79_KU607584
+ blaZ_80_KU607855
+ blaZ_81_FGJZ01000020
+ blaZ_82_FGSJ01000003
+ blaZ_83_FGWO01000019
+ blaZ_84_FHDH01000010
+ blaZ_85_NZ_FHDT01000016
+ blaZ_87_NZ_LRNC01000042
+ blaZ_88_FKTX01000011
+ blaZ_89_FKPS01000007
+ blaZ_90_FKVU01000010
+ blaZ_91_FKQH01000022
+ blaZ_92_FKWG01000001
+ blaZ_93_FKQA01000038
+ blaZ_94_LYRW01000005
+ blaZ_95_MAJJ01000071
+ blaZ_96_LNDI01000019
+ blaZ_97_FMOK01000003
+ blaZ_98_LTEF01000041
+ blaZ_99_LTNH01000008
+ blaZ_100_LTMH01000008
+ blaZ_101_LTLP01000099
+ blaZ_102_MLQA01000023
+ blaZ_103_FQSJ01000009
+ blaZ_104_FQHI01000006
+ blaZ_105_FQJS01000007
+ blaZ_106_FQHX01000011
+ blaZ_107_FQDM01000011
+ blaZ_108_FQPO01000005
+ blaZ_41_AENR01000015
+ blaZ_86_AIZE01000023
+ blaZ_109_AOAS01000022
+ blaZ_110_AJCZ01000013
+ blaZ_111_AJCN01000010
+ blaZ_112_AKGL01000044
+ blaZ_113_AHVS01000008
+ blaZ_114_NC_013379
+ blaZ_115_FN433596
+ blaZ_116_NC_013348
+ blaZ_117_ACHE01000004
+ blaZ_118_NC_004461
+ blaZ_119_NZ_CANQ01000029
+ blaZ_120_NZ_ALWG01000005
+ blaZ_121_AIWM01000014
+ blaZ_122_NZ_AJGE01000057
+ blaZ_123_NC_013653
+ blaZ_124_NC_013944
+ blaZ_125_CP003194
+ blaZ_126_NC_013374
+ blaZ_127_ACFR01000018
+ blaZ_128_GQ900471
+ blaZ_129_CP003194
+ blaZ_130_AHKZ01000073
+ blaZ_131_GQ900485
+ blaZ_132_AHVO01000010
+ blaZ_133_AIDT01000014
+ blaZ_134_NZ_AJGE01000047
+ blaZ_135_AB811795
+ blaZ_136_NZ_ALWE01000009
+ blaZ_81_FGJZ01000020
+ blaZ_138_CP003979
+ Modified:
+ blaOXA-307_1_NG050611 -> blaOXA-307_1_NG_050611
+ blaOXA-287_1_NG050609 -> blaOXA-287_1_NG_050609
+ blaOXA-293_1_NG050610 -> blaOXA-289_1_APRM01000005
+ blaOXA-466_1_KR061501
+ blaOXA-308_1_NG049603 -> blaOXA-308_1_APPN01000080
+ blaOXA-306_1_NG049602 -> blaOXA-306_1_APSB01000022
+ blaOXA-303_1_NG049599 -> blaOXA-303_1_APSD01000035
+ blaOXA-302_1_NG049598 -> blaOXA-302_1_APRT01000004
+ blaOXA-299_1_NG049594 -> blaOXA-299_1_APQD01000016
+ blaOXA-298_1_NG049593 -> blaOXA-298_1_APSA01000003
+ blaOXA-1_1_J02967 -> blaOXA-1_1_HQ170510
+ blaOXA-2_1_GQ466184 -> blaOXA-2_2_GQ466184
+ blaOXA-2_2_AY444814 -> blaOXA-2_1_DQ112222
+ blaOXA-5_1_X58272 -> blaOXA-306_1_NG049602
+ blaOXA-10_2_EU886981 -> blaOXA-9_1_KQ089875
+ blaOXA-17_2_DQ902344 -> blaOXA-17_1_DQ902344
+ blaOXA-18_1_EU503121 -> blaOXA-18_1_U85514
+ blaOXA-20_1_AF024602 -> blaOXA-20_1_AY307114
+ blaOXA-21_2_DQ993182 -> blaOXA-21_1_AB626885
+ blaOXA-23_1_HQ700358 -> blaOXA-23_1_AY795964
+ blaOXA-28_1_FJ374756 -> blaOXA-28_1_AF231133
+ blaOXA-46_1_AJ969237 -> blaOXA-46_1_AF317511
+ blaOXA-56_1_AY660529 -> blaOXA-56_1_AY445080
+ blaOXA-60_1_AY664506 -> blaOXA-60_1_AF525303
+ blaOXA-66_4_FJ360530 -> blaOXA-66_1_AY750909
+ blaOXA-69_1_HM564339 -> blaOXA-69_1_AY859527
+ blaOXA-71_1_AY859528 -> blaOXA-71_1_AY750913
+ blaOXA-72_1_GU199039 -> blaOXA-72_1_AY739646
+ blaOXA-82_2_EU019536 -> blaOXA-82_1_DQ987479
+ blaOXA-69_1_HM564339 -> blaOXA-89_1_DQ445683
+ blaOXA-98_1_AM279652 -> blaOXA-98_1_EU255288
+ blaOXA-107_1_EF650033 -> blaOXA-107_1_LAVJ01000082
+ blaOXA-114_1_HM368376 -> blaOXA-114g_1_HM368376
+ blaOXA-114_2_HM368375 -> blaOXA-114f_1_HM368375
+ blaOXA-114_3_HM104634 -> blaOXA-114e_1_HM104634
+ blaOXA-114_4_HM104633 -> blaOXA-114d_1_HM104633
+ blaOXA-114_5_HM056041 -> blaOXA-114c_1_HM056041
+ blaOXA-114_6_HM056040 -> blaOXA-114a_1_EU188842
+ blaOXA-119_1_AY139598 -> blaOXA-119_1_DQ767903
+ blaOXA-120_1_HE963768 -> blaOXA-120_1_EU255289
+ blaOXA-127_1_EU255296
+ blaOXA-129_1_AM932669 -> blaOXA-129_1_FJWZ01000025
+ blaOXA-136_1_EU086833 -> blaOXA-136_1_EU086831
+ blaOXA-137_1_EU086836 -> blaOXA-137_1_EU086834
+ blaOXA-142_1_EU358785 -> blaOXA-142_1_LC169567
+ blaOXA-146_1_FJ194460 -> blaOXA-146_1_FJ194494
+ blaOXA-181_1_HM992946 -> blaOXA-181_1_CM004561
+ blaOXA-204_1_JQ809466 -> blaOXA-204_1_KP027885
+ blaOXA-207_1_JQ838185 -> blaOXA-207_1_LLFS01000355
+ blaOXA-208_1_FR853176 -> blaOXA-208_1_KF305665
+ blaOXA-224_1_JN596991 -> blaOXA-224_1_JN412067
+ blaOXA-243_1_JX206446 -> blaOXA-243_1_AFRQ01000031
+ blaOXA-244_1_JX438000 -> blaOXA-244_1_KP659189
+ blaZ_32_AP004832 -> blaZ_1_CP000704
+ blaZ_34_AP003139 -> blaZ_2_CP000731
+ blaZ_35_AJ302698 -> blaZ_5_AJ302698
+ blaZ_36_AJ400722 -> blaZ_11_AJ400722
+ blaOXA-297_1_NG049592 -> blaOXA-297_1_APRR01000006
+ blaOXA-296_1_NG049591 -> blaOXA-296_1_APOH01000009
+ blaOXA-295_1_NG049590 -> blaOXA-295_1_APRW01000016
+ blaOXA-294_1_NG049589 -> blaOXA-294_1_APPC01000015
+ blaOXA-292_1_NG049588 -> blaOXA-292_1_APRO01000007
+ blaOXA-291_1_NG049587 -> blaOXA-291_1_APRL01000010
+ blaOXA-288_1_NG049585 -> blaOXA-288_1_APRN01000033
+ blaOXA-286_1_NG049584 -> blaOXA-286_1_APOI01000030
+ blaOXA-279_1_NG049576 -> blaOXA-279_1_APOM01000058
+ blaOXA-275_1_NG049572 -> blaOXA-275_1_APPJ01000001
+ blaOXA-274_1_NG049571 -> blaOXA-274_1_APOS01000038
+ blaOXA-266_1_NG049562 -> blaOXA-266_1_APPO01000008
+ blaOXA-151_1_KP771979 -> blaOXA-151_1_CP009553
+ Deleted:
+ blaOXA-504_1_KT355710
+ blaOXA-491_1_JAIV01000087
+ blaOXA-464_1_JAIX01000028
+ blaOXA-2_1_DQ310703
+ blaOXA-9_2_JF703130
+ blaOXA-10_1_HM175875
+ blaOXA-12_1_U10251
+ blaOXA-14_1_L38523
+ blaOXA-50_1_AY306135
+ blaOXA-50_2_AY306133
+ blaOXA-50_3_AY306132
+ blaOXA-50_3_AY306130
+ blaOXA-51_1_AJ309734
+ blaOXA-51_3_EU255296
+ blaOXA-51_4_EU255295
+ blaOXA-51_5_EU255294
+ blaOXA-51_6_EU255293
+ blaOXA-51_7_EU255292
+ blaOXA-51_8_EU255291
+ blaOXA-51_9_EU255290
+ blaOXA-51_11_EU255288
+ blaOXA-58_14_EU107364
+ blaOXA-60_1_AY664506
+ blaOXA-60_2_AY664505
+ blaOXA-60_3_AY664504
+ blaOXA-60_4_AY662675
+ blaOXA-82_1_GQ352402
+ blaOXA-85_1_AY227054
+ blaOXA-117_2_EU220745
+ blaOXA-136_2_EU086832
+ blaOXA-436_1_KT959103
2018-07-23 Modified:
- mef(A)_3_AF227521 -> mef(A)_3_AF227520
- mph(D)_1_AB048591 -> mph(C)_3_AM180068
- mph(E)_3_EU294228 -> mph(E)_1_DQ839391
- vat(G)_1_GQ205627 -> vat(H)_1_GQ205627
- Added:
- mef(A)_4_HG423652
- mph(C)_4_AM397632
- mph(C)_5_AM180067
- mph(E)_2_JF769133
- vga(A)_3_JQ312422
- vga(A)V_1_AF186237
- vga(A)LC_4_JQ312423
- tva(A)_1_ENA_SOX29786
- mph(N)_1_KF648874
- mph(I)_1_KX531056
- mph(J)_1_KY753883
- mdf(A)_1_Y08743
- mdt(A)_1_X92946
- mre(A)_1_U92073
- cmr_1_U43535
- Deleted:
- vat(D)_2_AF368302
+ mef(A)_3_AF227521 -> mef(A)_3_AF227520
+ mph(D)_1_AB048591 -> mph(C)_3_AM180068
+ mph(E)_3_EU294228 -> mph(E)_1_DQ839391
+ vat(G)_1_GQ205627 -> vat(H)_1_GQ205627
+ Added:
+ mef(A)_4_HG423652
+ mph(C)_4_AM397632
+ mph(C)_5_AM180067
+ mph(E)_2_JF769133
+ vga(A)_3_JQ312422
+ vga(A)V_1_AF186237
+ vga(A)LC_4_JQ312423
+ tva(A)_1_ENA_SOX29786
+ mph(N)_1_KF648874
+ mph(I)_1_KX531056
+ mph(J)_1_KY753883
+ mdf(A)_1_Y08743
+ mdt(A)_1_X92946
+ mre(A)_1_U92073
+ cmr_1_U43535
+ Deleted:
+ vat(D)_2_AF368302
2018-07-23 Added:
- dfrA19_1_EU855687
- dfrA1_1_FJ591049
- dfrA1_2_HM055363
- dfrA1_3_GU726913
- dfrA1_4_AB188271
- dfrA1_5_EU089668
- dfrA1_6_FJ215857
- dfrA1_7_AJ400733
- dfrA1_8_X00926
- dfrA1_9_AJ238350
- dfrA1_10_AF203818
- dfrA1_11_AJ419168
- dfrA1_12_AY141977
- dfrA1_13_DQ018382
- dfrA1_14_AB199789
- dfrA1_15_FM207631
- dfrA1_16_FJ001872
- dfrA1_17_FJ489928
- dfrA12_1_FJ763641
- dfrA12_2_KJ546436
- dfrA12_3_KJ568502
- dfrA12_4_EU650399
- dfrA12_5_FR875302
- dfrA12_6_AY551331
- dfrA12_7_AB196348
- dfrA12_8_AM040708
- dfrA12_9_DQ995286
- dfrA12_10_FM877486
- dfrA14_1_KF921535
- dfrA14_3_Z50804
- dfrA14_4_AF393510
- dfrA15_1_AF156486
- dfrA15_2_AF221900
- dfrA15_3_DQ647028
- dfrA16_2_AF174129
- dfrA16_3_AY878718
- dfrA16_4_EU158182
- dfrA22_1_KC200566
- dfrA22_2_KF525301
- dfrA22_3_FM957884
- dfrA22_4_AJ628423
- dfrA22_5_AJ968952
- dfrA29_1_AM237806
- dfrA5_3_KF030794
- dfrA5_2_FJ001870
- dfrA5_4_AY139589
- dfrA6_2_FJ905898
- dfrA7_1_AB161450
- dfrA7_2_AJ884724
- dfrA7_3_EU339235
- dfrA7_4_FN563072
- dfrA7_5_AJ419170
- dfrB1_2_AM993098
- dfrB2_2_AY553333
- dfrB4_2_EU339233
- dfrB4_3_HQ317921
- dfrD_1_Z50141
- dfrA17_11_JN645876
- dfrA17_2_JN645879
- dfrA17_3_JQ414038
- dfrA1_4_AB188271
- dfrA17_5_GU358475
- dfrA17_6_AF180469
- dfrA17_7_AB196349
- dfrA17_8_AM932673
- dfrA17_9_FJ807902
- dfrA17_10_AM937244
- Deleted:
- dfrA12_1_AB571791
- dfrA15_1_HM449019
- dfrA22_1_HM173356
- dfrA16_1_DQ316603
- dfrA3b_1_AY878717
- dfrA16_1_FN561628
- dfrA1_25_AJ844287
- dfrA1_30_JQ690541
- dfrA1_2_AJ419168
- dfrA7_1_AJ419170
- dfrA1_5_AJ238350
- dfrA1_1_X00926
- dfrA7_1_JF806498
- dfrA29_1_AM237806
- dfrD_1_Z50141
- Modified:
- dfrB2_1_DQ839391 -> dfrB2_1_J01773
- dfrA14_1_DQ388123 -> dfrA14_5_DQ388123
- dfrK_4_FN677369 -> dfrK_2_FN677369
- dfrB1_2_U36276 -> dfrB1_1_U36276
- dfrK_8_FN812951 -> dfrK_3_FN812951
- dfrB4_1_FM877484 -> dfrB4_1_AJ429132
- dfrB3_1_FM877478 -> dfrB3_2_FM877478
- dfrA21_1_AM932669 -> dfrA21_1_AY552589
- dfrA15b_1_AJ867237 -> dfrA15_4_AJ867237
- dfrA14_1_Z50805 -> dfrA14_2_Z50805
+ dfrA19_1_EU855687
+ dfrA1_1_FJ591049
+ dfrA1_2_HM055363
+ dfrA1_3_GU726913
+ dfrA1_4_AB188271
+ dfrA1_5_EU089668
+ dfrA1_6_FJ215857
+ dfrA1_7_AJ400733
+ dfrA1_8_X00926
+ dfrA1_9_AJ238350
+ dfrA1_10_AF203818
+ dfrA1_11_AJ419168
+ dfrA1_12_AY141977
+ dfrA1_13_DQ018382
+ dfrA1_14_AB199789
+ dfrA1_15_FM207631
+ dfrA1_16_FJ001872
+ dfrA1_17_FJ489928
+ dfrA12_1_FJ763641
+ dfrA12_2_KJ546436
+ dfrA12_3_KJ568502
+ dfrA12_4_EU650399
+ dfrA12_5_FR875302
+ dfrA12_6_AY551331
+ dfrA12_7_AB196348
+ dfrA12_8_AM040708
+ dfrA12_9_DQ995286
+ dfrA12_10_FM877486
+ dfrA14_1_KF921535
+ dfrA14_3_Z50804
+ dfrA14_4_AF393510
+ dfrA15_1_AF156486
+ dfrA15_2_AF221900
+ dfrA15_3_DQ647028
+ dfrA16_2_AF174129
+ dfrA16_3_AY878718
+ dfrA16_4_EU158182
+ dfrA22_1_KC200566
+ dfrA22_2_KF525301
+ dfrA22_3_FM957884
+ dfrA22_4_AJ628423
+ dfrA22_5_AJ968952
+ dfrA29_1_AM237806
+ dfrA5_3_KF030794
+ dfrA5_2_FJ001870
+ dfrA5_4_AY139589
+ dfrA6_2_FJ905898
+ dfrA7_1_AB161450
+ dfrA7_2_AJ884724
+ dfrA7_3_EU339235
+ dfrA7_4_FN563072
+ dfrA7_5_AJ419170
+ dfrB1_2_AM993098
+ dfrB2_2_AY553333
+ dfrB4_2_EU339233
+ dfrB4_3_HQ317921
+ dfrD_1_Z50141
+ dfrA17_11_JN645876
+ dfrA17_2_JN645879
+ dfrA17_3_JQ414038
+ dfrA1_4_AB188271
+ dfrA17_5_GU358475
+ dfrA17_6_AF180469
+ dfrA17_7_AB196349
+ dfrA17_8_AM932673
+ dfrA17_9_FJ807902
+ dfrA17_10_AM937244
+ Deleted:
+ dfrA12_1_AB571791
+ dfrA15_1_HM449019
+ dfrA22_1_HM173356
+ dfrA16_1_DQ316603
+ dfrA3b_1_AY878717
+ dfrA16_1_FN561628
+ dfrA1_25_AJ844287
+ dfrA1_30_JQ690541
+ dfrA1_2_AJ419168
+ dfrA7_1_AJ419170
+ dfrA1_5_AJ238350
+ dfrA1_1_X00926
+ dfrA7_1_JF806498
+ dfrA29_1_AM237806
+ dfrD_1_Z50141
+ Modified:
+ dfrB2_1_DQ839391 -> dfrB2_1_J01773
+ dfrA14_1_DQ388123 -> dfrA14_5_DQ388123
+ dfrK_4_FN677369 -> dfrK_2_FN677369
+ dfrB1_2_U36276 -> dfrB1_1_U36276
+ dfrK_8_FN812951 -> dfrK_3_FN812951
+ dfrB4_1_FM877484 -> dfrB4_1_AJ429132
+ dfrB3_1_FM877478 -> dfrB3_2_FM877478
+ dfrA21_1_AM932669 -> dfrA21_1_AY552589
+ dfrA15b_1_AJ867237 -> dfrA15_4_AJ867237
+ dfrA14_1_Z50805 -> dfrA14_2_Z50805
2018-07-16 Modified:
- mcr-3_1_NG055493 -> mcr-3.1_1_KY924928
- mcr-3_2_NG055497 -> mcr-3.2_1_NG055523
- mcr-3.1_KY924928 -> mcr-3.4_1_NG055492
- mcr-3.3_1_NG055783
- mcr-3.2_1_NG055523 -> mcr-3.5_1_MF463699
- mcr-3.4_1_NG055492 -> mcr-3.11_1_MG489958
- mcr-3.5_1_MF463699 -> mcr-3.19_1_NG055497
- mcr-3.10_1_MG214533 -> mcr-3.20_1_NG055493
- mcr-3.11_1_MG489958 -> mcr-3.22_1_NG060581
- mcr-4.2_1_MG581979 -> mcr-4.2_1_MG459157
- Added:
- mcr-1.14_1_LS398440
- mcr-1.13_1_MG384739
- mcr-3.6_1_MF598076
- mcr-3.7_1_MF598077
- mcr-3.8_1_MF598079
- mcr-3.9_1_MF598080
- mcr-3.10_1_MG214533
- mcr-3.12_1_MG564491
- mcr-3.13_1_MH332763
- mcr-3.14_1_MH332764
- mcr-3.15_1_MH332765
- mcr-3.16_1_MH332766
- mcr-3.17_1_MH332767
- mcr-3.18_1_MH332768
- mcr-3.21_1_NG060582
- mcr-3.23_1_NG060583
- mcr-3.24_1_NG060580
- mcr-3.25_1_NG060585
- mcr-4.4_1_MG822665
- mcr-4.5_1_MG822664
- mcr-8_1_MG736312
+ mcr-3_1_NG055493 -> mcr-3.1_1_KY924928
+ mcr-3_2_NG055497 -> mcr-3.2_1_NG055523
+ mcr-3.1_KY924928 -> mcr-3.4_1_NG055492
+ mcr-3.3_1_NG055783
+ mcr-3.2_1_NG055523 -> mcr-3.5_1_MF463699
+ mcr-3.4_1_NG055492 -> mcr-3.11_1_MG489958
+ mcr-3.5_1_MF463699 -> mcr-3.19_1_NG055497
+ mcr-3.10_1_MG214533 -> mcr-3.20_1_NG055493
+ mcr-3.11_1_MG489958 -> mcr-3.22_1_NG060581
+ mcr-4.2_1_MG581979 -> mcr-4.2_1_MG459157
+ Added:
+ mcr-1.14_1_LS398440
+ mcr-1.13_1_MG384739
+ mcr-3.6_1_MF598076
+ mcr-3.7_1_MF598077
+ mcr-3.8_1_MF598079
+ mcr-3.9_1_MF598080
+ mcr-3.10_1_MG214533
+ mcr-3.12_1_MG564491
+ mcr-3.13_1_MH332763
+ mcr-3.14_1_MH332764
+ mcr-3.15_1_MH332765
+ mcr-3.16_1_MH332766
+ mcr-3.17_1_MH332767
+ mcr-3.18_1_MH332768
+ mcr-3.21_1_NG060582
+ mcr-3.23_1_NG060583
+ mcr-3.24_1_NG060580
+ mcr-3.25_1_NG060585
+ mcr-4.4_1_MG822665
+ mcr-4.5_1_MG822664
+ mcr-8_1_MG736312
2018-07-03 Deleted:
- mecC_1_FR823292
- mecC_2_FR821779
- mecA_4_AB033763
- mecA_7_BA000018
- mecA_10_AB512767
- mecA_14_AB505630
- mecA_15_AB505628
- Added:
- mecA_1_NC_002745
- mecA2_1_AM048811
- mecA_2_NC_002951
- mecA_3_Y13095
- mecC2_1_KF955540
- mecA1_1_AB547235
- mecA_4_AB546266
- mcr-3.1_KY924928
- mecA1_2_AY820253
- mecA_5_AB546267
- mecA2_2_AB546780
- mecA1_3_Y13094
- mecB_1_NC_011996
- mecA_6_BX571856
- mecA_7_HE861945
- mecA1_4_AB547236
- mecA_8_NC_007168
- mecA1_5_AB547234
- mcr-3.1_KY924928
- mecC_2_FR823292
- mecD_1_KY013611
- mecC_3_KR732654
- mecC_4_HG515014
+ mecC_1_FR823292
+ mecC_2_FR821779
+ mecA_4_AB033763
+ mecA_7_BA000018
+ mecA_10_AB512767
+ mecA_14_AB505630
+ mecA_15_AB505628
+ Added:
+ mecA_1_NC_002745
+ mecA2_1_AM048811
+ mecA_2_NC_002951
+ mecA_3_Y13095
+ mecC2_1_KF955540
+ mecA1_1_AB547235
+ mecA_4_AB546266
+ mcr-3.1_KY924928
+ mecA1_2_AY820253
+ mecA_5_AB546267
+ mecA2_2_AB546780
+ mecA1_3_Y13094
+ mecB_1_NC_011996
+ mecA_6_BX571856
+ mecA_7_HE861945
+ mecA1_4_AB547236
+ mecA_8_NC_007168
+ mecA1_5_AB547234
+ mcr-3.1_KY924928
+ mecC_2_FR823292
+ mecD_1_KY013611
+ mecC_3_KR732654
+ mecC_4_HG515014
2018-07-03 Added:
- crpP_1_HM560971
+ crpP_1_HM560971
2018-07-03 Modified:
- blaIMP-1_1_DQ522237 -> blaIMP-1_1_EF027105
+ blaIMP-1_1_DQ522237 -> blaIMP-1_1_EF027105
2018-06-25 Modified:
- aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
- aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
- cfr(B)_1_KR610408 -> cfr(B)_3_KR610408
- Deleted:
- mef(A)_4_AF274302
+ aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
+ aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
+ cfr(B)_1_KR610408 -> cfr(B)_3_KR610408
+ Deleted:
+ mef(A)_4_AF274302
2018-06-22 Modified:
- catB4_1_EU935739 -> catB4_1_AF322577
+ catB4_1_EU935739 -> catB4_1_AF322577
2018-06-11 Deleted:
- aph(2'')-If_1_KF652097
- aph(2'')-Ih_1_KF652096
- ant(2'')-Ia_18_M86913
- aph(4)-Ib_1_X03615
- aph(3'')-Ib_1_M28829
- aph(3'')-Ib_3_AF321550
- aph(6)-Id_1_M28829
- fosB1_2_KP795112
- erm(F)_2_M17124
- erm(R)_2_AY623658
- mef(A)_10_AF376746
- erm(B)_23_Y00116
- erm(B)_24_M11180
- lsa(E)_1_AF408195
- msr(E)_1_FR751518
- mph(E)_5_DQ839391
- lmr(B)_1_X62867
- mef(A)_5_AF227520
- vat(E)_6_AF242872
- erm(C)_6_X82668
- erm(33)_1_AJ579365
- erm(U)_1_NG_047843
- qnrB79_1_KM985472
- qnrB88_1_KX118608
- tet(C)_4_AY043298
- tet(O/W/32/O)_3_FR823304
- tet(O/W/32/O)_4_FR824044
- tet(0/32/0)_4_AINH01000038
- tet(0/32/0)_5_NZ_AINJ01000054
- tet(0/32/0)_6_AIOQ01000025
- tet(S/M)_2_AY534326
- tet(W/32/O)_4_AM710604
- Modified:
- mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
- lnu(B)_2_JQ861959 -> lnu(B)_1_JQ861959
- cfrB_1_KR610408 -> cfr(B)_1_KR610408
- tet(0/32/0)_2_AJ295238 -> tet(O/32/O)_2_AJ295238
- tet(0/32/0)_3_NZ_AUJS01000017 -> tet(O/32/O)_3_NZ_AUJS01000017
- tet(0/32/0)_7_FP929050 -> tet(O/32/O)_7_FP929050
+ aph(2'')-If_1_KF652097
+ aph(2'')-Ih_1_KF652096
+ ant(2'')-Ia_18_M86913
+ aph(4)-Ib_1_X03615
+ aph(3'')-Ib_1_M28829
+ aph(3'')-Ib_3_AF321550
+ aph(6)-Id_1_M28829
+ fosB1_2_KP795112
+ erm(F)_2_M17124
+ erm(R)_2_AY623658
+ mef(A)_10_AF376746
+ erm(B)_23_Y00116
+ erm(B)_24_M11180
+ lsa(E)_1_AF408195
+ msr(E)_1_FR751518
+ mph(E)_5_DQ839391
+ lmr(B)_1_X62867
+ mef(A)_5_AF227520
+ vat(E)_6_AF242872
+ erm(C)_6_X82668
+ erm(33)_1_AJ579365
+ erm(U)_1_NG_047843
+ qnrB79_1_KM985472
+ qnrB88_1_KX118608
+ tet(C)_4_AY043298
+ tet(O/W/32/O)_3_FR823304
+ tet(O/W/32/O)_4_FR824044
+ tet(0/32/0)_4_AINH01000038
+ tet(0/32/0)_5_NZ_AINJ01000054
+ tet(0/32/0)_6_AIOQ01000025
+ tet(S/M)_2_AY534326
+ tet(W/32/O)_4_AM710604
+ Modified:
+ mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
+ lnu(B)_2_JQ861959 -> lnu(B)_1_JQ861959
+ cfrB_1_KR610408 -> cfr(B)_1_KR610408
+ tet(0/32/0)_2_AJ295238 -> tet(O/32/O)_2_AJ295238
+ tet(0/32/0)_3_NZ_AUJS01000017 -> tet(O/32/O)_3_NZ_AUJS01000017
+ tet(0/32/0)_7_FP929050 -> tet(O/32/O)_7_FP929050
2018-06-01 Deleted:
- VanR-A_1_FJ866609
- VanA_1_FJ866609
- VanY-A_1_FJ866609
- VanZ-A_1_FJ866609
- VanS-A_2_M97297
- VanA_2_M97297
- VanY-A_2_M97297
- VanR-B_1_AF192329
- VanS-B_1_AF192329
- VanY-B_1_AF192329
- VanW-B_1_AF192329
- VanH-B_1_AF192329
- VanB_1_AF192329
- VanX-B_1_AF192329
- VanC_1_AF162694
- VanXY-C_1_AF162694
- VanT-C_1_AF162694
- VanR-C_1_AF162694
- VanS-C_1_AF162694
- VanC_2_DQ022190
- VanT-C_1_DQ022190
- VanS-C_2_DQ022190
- VanC_3_EU151752
- VanXY-C_3_EU151752
- VanT-C_2_EU151752
- VanR-C_3_EU151752
- VanS-C_3_EU151752
- VanC_4_EU151753
- VanXY-C_4_EU151753
- VanT-C_3_EU151753
- VanR-C_4_EU151753
- VanS-C_4_EU151753
- VanC_5_EU151754
- VanXY-C_5_EU151754
- VanR-D_1_AB242319
- VanS-D_1_AB242319
- VanY-D_1_AB242319
- VanH-D_1_AB242319
- VanD_1_AB242319
- VanX-D_1_AB242319
- VanR-D_2_AF175293
- VanS-D_2_AF175293
- VanY-D_2_AF175293
- VanH-D_2_AF175293
- VanD_2_AF175293
- VanX-D_2_AF175293
- VanY-D_3_AY082011
- VanH-D_3_AY082011
- VanD_3_AY082011
- VanR-D_4_AY489045
- VanS-D_3_AY489045
- VanY-D_4_AY489045
- VanH-D_4_AY489045
- VanD_4_AY489045
- VanX-D_4_AY489045
- VanR-F_1_AF155139
- VanS-F_1_AF155139
- VanY-F_1_AF155139
- VanZ-F_1_AF155139
- VanH-E_1_AF155139
- VanE_1_AF155139
- VanX-E_1_AF155139
- VanU-G_1_AY271782
- VanR-G_1_AY271782
- VanS-G_1_AY271782
- VanY-G_1_DQ212986
- VanW-G_1_AY271782
- VanG_1_AY271782
- VanXY-G_1_AY271782
- VanT-G_1_AY271782
- VanL_1_EU250284
- VanXY-L_1_EU250284
- VanTm-L_1_EU250284
- VanTr-L_1_EU250284
- VanR-L_1_EU250284
- VanS-L_1_EU250284
- VanR-M_1_FJ349556
- VanS-M_1_FJ349556
- VanY-M_1_FJ349556
- VanH-M_1_FJ349556
- VanM_1_FJ349556
- VanX-M_1_FJ349556
- VanH-Sc_1_AL939117
- ddlA2-Sc_2_AL939117
- VanX-Sc_1_AL939117
- VanR-Pt_3_DQ018710
- VanS-Pt_3_DQ018710
- VanH-Pt_3_DQ018710
- VanPt_3_DQ018710
- VanX-Pt_3_DQ018710
- VanY-Pt_3_DQ018710
- VanZ-Pt_3_DQ018710
- VanR-Pt2_4_AY926880
- VanS-Pt2_4_AY926880
- VanH-Pt2_4_AY926880
- VanPt2_4_AY926880
- VanX-Pt2_4_AY926880
- VanY-Pt2_4_AY926880
- VanR-Pt_5_DQ018711
- VanS-Pt_5_DQ018711
- VanW-Pt_2_DQ018711
- VanH-Pt_5_DQ018711
- VanPt_5_DQ018711
- VanX-Pt_5_DQ018711
- VanY-Pt_5_DQ018711
- VanZ-Pt_4_DQ018711
- VanH-Ac1_6_DQ246438
- VanX-Ac1_6_DQ246438
- VanH-Ac2_7_AY618461
- VanX-Ac2_7_AY618461
- VanH-Ao1_8_AF060799
- VanX-Ao1_8_AF060799
- VanH-Ao2_9_HQ679900
- VanAo2_6_HQ679900
- VanX-Ao2_9_HQ679900
- VanH-A(Bc)_7_Y15704
- VanN_1_JF802084
- VanXY-N_1_JF802084
- VanT-N_1_JF802084
- VanR-N_1_JF802084
- VanS-N_1_JF802084
- Modified:
- VanH-A_1_FJ866609 -> VanHAX_1_FJ866609
- VanX-A_1_FJ866609 -> VanX_bc_1_Y15708
- Added:
- VanHAX_2_M97297
- VanHAX_PT_1_DQ018710
- VanHAX_PA_1_DQ018711
- VanHAX_PT_2_AY926880
- VanH_bc_1_Y15705
- VanA_bc_1_Y15704
- dldHA2X_1_AL939117
- VanHBX_1_AF192329
- VanHBX_2_U35369
- VanC1XY_1_AF162694
- VanXY_C2_1_AY033089
- VanC2_1_L29638
- VanC3XY_1_AY033764
- VanC1XY_2_DQ022190
- VanC2XY_1_EU151754
- VanC4XY_1_EU151752
- VanC4XY_2_EU151753
- VanC2XY_2_EU151755
- VanC4XY_3_EU151756
- VanC2XY_3_EU151757
- VanC2XY_4_EU151758
- VanC3XY_2_EU151759
- VanC2XY_5_EU151760
- VanHDX_6_DQ172830
- VanHDX_7_AB242319
- VanHDX_3_AF175293
- VanHDX_4_AY082011
- VanHDX_5_AY489045
- VanHDX_1_AF130997
- VanHDX_2_EU999036
- VanHFX_1_AF155139
- VanE_1_AF136925
- VanEXY_1_FJ872411
- VanGXY_1_AY271782
- VanG2XY_1_FJ872410
- VanLXY_1_EU250284
- VanHMX_1_FJ349556
- VanNXY_1_JF802084
- VanHOX_1_KF478993
- vanXmurFvanWI_1_CP001336
- vanXmurFvanKWI_1_NZAGAF01000127
- vanXmurFvanKWI_2_AP008230
+ VanR-A_1_FJ866609
+ VanA_1_FJ866609
+ VanY-A_1_FJ866609
+ VanZ-A_1_FJ866609
+ VanS-A_2_M97297
+ VanA_2_M97297
+ VanY-A_2_M97297
+ VanR-B_1_AF192329
+ VanS-B_1_AF192329
+ VanY-B_1_AF192329
+ VanW-B_1_AF192329
+ VanH-B_1_AF192329
+ VanB_1_AF192329
+ VanX-B_1_AF192329
+ VanC_1_AF162694
+ VanXY-C_1_AF162694
+ VanT-C_1_AF162694
+ VanR-C_1_AF162694
+ VanS-C_1_AF162694
+ VanC_2_DQ022190
+ VanT-C_1_DQ022190
+ VanS-C_2_DQ022190
+ VanC_3_EU151752
+ VanXY-C_3_EU151752
+ VanT-C_2_EU151752
+ VanR-C_3_EU151752
+ VanS-C_3_EU151752
+ VanC_4_EU151753
+ VanXY-C_4_EU151753
+ VanT-C_3_EU151753
+ VanR-C_4_EU151753
+ VanS-C_4_EU151753
+ VanC_5_EU151754
+ VanXY-C_5_EU151754
+ VanR-D_1_AB242319
+ VanS-D_1_AB242319
+ VanY-D_1_AB242319
+ VanH-D_1_AB242319
+ VanD_1_AB242319
+ VanX-D_1_AB242319
+ VanR-D_2_AF175293
+ VanS-D_2_AF175293
+ VanY-D_2_AF175293
+ VanH-D_2_AF175293
+ VanD_2_AF175293
+ VanX-D_2_AF175293
+ VanY-D_3_AY082011
+ VanH-D_3_AY082011
+ VanD_3_AY082011
+ VanR-D_4_AY489045
+ VanS-D_3_AY489045
+ VanY-D_4_AY489045
+ VanH-D_4_AY489045
+ VanD_4_AY489045
+ VanX-D_4_AY489045
+ VanR-F_1_AF155139
+ VanS-F_1_AF155139
+ VanY-F_1_AF155139
+ VanZ-F_1_AF155139
+ VanH-E_1_AF155139
+ VanE_1_AF155139
+ VanX-E_1_AF155139
+ VanU-G_1_AY271782
+ VanR-G_1_AY271782
+ VanS-G_1_AY271782
+ VanY-G_1_DQ212986
+ VanW-G_1_AY271782
+ VanG_1_AY271782
+ VanXY-G_1_AY271782
+ VanT-G_1_AY271782
+ VanL_1_EU250284
+ VanXY-L_1_EU250284
+ VanTm-L_1_EU250284
+ VanTr-L_1_EU250284
+ VanR-L_1_EU250284
+ VanS-L_1_EU250284
+ VanR-M_1_FJ349556
+ VanS-M_1_FJ349556
+ VanY-M_1_FJ349556
+ VanH-M_1_FJ349556
+ VanM_1_FJ349556
+ VanX-M_1_FJ349556
+ VanH-Sc_1_AL939117
+ ddlA2-Sc_2_AL939117
+ VanX-Sc_1_AL939117
+ VanR-Pt_3_DQ018710
+ VanS-Pt_3_DQ018710
+ VanH-Pt_3_DQ018710
+ VanPt_3_DQ018710
+ VanX-Pt_3_DQ018710
+ VanY-Pt_3_DQ018710
+ VanZ-Pt_3_DQ018710
+ VanR-Pt2_4_AY926880
+ VanS-Pt2_4_AY926880
+ VanH-Pt2_4_AY926880
+ VanPt2_4_AY926880
+ VanX-Pt2_4_AY926880
+ VanY-Pt2_4_AY926880
+ VanR-Pt_5_DQ018711
+ VanS-Pt_5_DQ018711
+ VanW-Pt_2_DQ018711
+ VanH-Pt_5_DQ018711
+ VanPt_5_DQ018711
+ VanX-Pt_5_DQ018711
+ VanY-Pt_5_DQ018711
+ VanZ-Pt_4_DQ018711
+ VanH-Ac1_6_DQ246438
+ VanX-Ac1_6_DQ246438
+ VanH-Ac2_7_AY618461
+ VanX-Ac2_7_AY618461
+ VanH-Ao1_8_AF060799
+ VanX-Ao1_8_AF060799
+ VanH-Ao2_9_HQ679900
+ VanAo2_6_HQ679900
+ VanX-Ao2_9_HQ679900
+ VanH-A(Bc)_7_Y15704
+ VanN_1_JF802084
+ VanXY-N_1_JF802084
+ VanT-N_1_JF802084
+ VanR-N_1_JF802084
+ VanS-N_1_JF802084
+ Modified:
+ VanH-A_1_FJ866609 -> VanHAX_1_FJ866609
+ VanX-A_1_FJ866609 -> VanX_bc_1_Y15708
+ Added:
+ VanHAX_2_M97297
+ VanHAX_PT_1_DQ018710
+ VanHAX_PA_1_DQ018711
+ VanHAX_PT_2_AY926880
+ VanH_bc_1_Y15705
+ VanA_bc_1_Y15704
+ dldHA2X_1_AL939117
+ VanHBX_1_AF192329
+ VanHBX_2_U35369
+ VanC1XY_1_AF162694
+ VanXY_C2_1_AY033089
+ VanC2_1_L29638
+ VanC3XY_1_AY033764
+ VanC1XY_2_DQ022190
+ VanC2XY_1_EU151754
+ VanC4XY_1_EU151752
+ VanC4XY_2_EU151753
+ VanC2XY_2_EU151755
+ VanC4XY_3_EU151756
+ VanC2XY_3_EU151757
+ VanC2XY_4_EU151758
+ VanC3XY_2_EU151759
+ VanC2XY_5_EU151760
+ VanHDX_6_DQ172830
+ VanHDX_7_AB242319
+ VanHDX_3_AF175293
+ VanHDX_4_AY082011
+ VanHDX_5_AY489045
+ VanHDX_1_AF130997
+ VanHDX_2_EU999036
+ VanHFX_1_AF155139
+ VanE_1_AF136925
+ VanEXY_1_FJ872411
+ VanGXY_1_AY271782
+ VanG2XY_1_FJ872410
+ VanLXY_1_EU250284
+ VanHMX_1_FJ349556
+ VanNXY_1_JF802084
+ VanHOX_1_KF478993
+ vanXmurFvanWI_1_CP001336
+ vanXmurFvanKWI_1_NZAGAF01000127
+ vanXmurFvanKWI_2_AP008230
2018-06-01 Modified:
- aac(6')-Ib-cr_1_DQ303918 -> aac(6')Ib-cr_1_DQ303918
- aac(6')-Ib-cr_2_EF636461 -> aac(6')Ib-cr_2_EF636461
- mcr-1.8_1_KY683842 ->mcr_1.8_1_KY683842
- mcr-3.1_1_KY924928 -> mcr-3.1_KY924928
- mef(A)_3_AF227520 -> mef(A)_3_AF227521
- lsa(E)_1_JX560992 -> lsa(E)_1_AF408195
- erm(42)_2_AB601890
- Added:
- erm(B)_10_U86375
- erm(R)_2_AY623658
- mef(A)_10_AF376746
- msr(A)_3_M81802
- msr(E)_4_EU294228
- lmr(B)_1_X62867
- Deleted:
- mef(A)_4_HG423652
+ aac(6')-Ib-cr_1_DQ303918 -> aac(6')Ib-cr_1_DQ303918
+ aac(6')-Ib-cr_2_EF636461 -> aac(6')Ib-cr_2_EF636461
+ mcr-1.8_1_KY683842 ->mcr_1.8_1_KY683842
+ mcr-3.1_1_KY924928 -> mcr-3.1_KY924928
+ mef(A)_3_AF227520 -> mef(A)_3_AF227521
+ lsa(E)_1_JX560992 -> lsa(E)_1_AF408195
+ erm(42)_2_AB601890
+ Added:
+ erm(B)_10_U86375
+ erm(R)_2_AY623658
+ mef(A)_10_AF376746
+ msr(A)_3_M81802
+ msr(E)_4_EU294228
+ lmr(B)_1_X62867
+ Deleted:
+ mef(A)_4_HG423652
2018-05-24 Deleted:
- erm(B)_10_U86375
- erm(R)_2_AY623658
- mef(A)_3_AF227521
- msr(E)_4_EU294228
- lmr(B)_1_X62867
- mef(A)_4_AF274302
- mef(A)_5_AF227520
- erm(33)_1_AJ579365
- erm(C)_6_X82668
- qnrB79_1_KM985472
- qnrB88_1_KX118608
- Modified:
- erm(42)_2_AB601890
- mef(A)_3_AF227521 -> mef(A)_3_AF227520
- mef(A)_10_AF376746 -> mef(A)_4_HG423652
- lsa(E)_1_AF408195 -> lsa(E)_1_JX560992
+ erm(B)_10_U86375
+ erm(R)_2_AY623658
+ mef(A)_3_AF227521
+ msr(E)_4_EU294228
+ lmr(B)_1_X62867
+ mef(A)_4_AF274302
+ mef(A)_5_AF227520
+ erm(33)_1_AJ579365
+ erm(C)_6_X82668
+ qnrB79_1_KM985472
+ qnrB88_1_KX118608
+ Modified:
+ erm(42)_2_AB601890
+ mef(A)_3_AF227521 -> mef(A)_3_AF227520
+ mef(A)_10_AF376746 -> mef(A)_4_HG423652
+ lsa(E)_1_AF408195 -> lsa(E)_1_JX560992
2018-05-24 Modified:
- aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
- aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
- mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
- mcr-3.1_KY924928 -> mcr-3.1_1_KY924928
- cfrB_1_KR610408 -> cfr(B)_3_KR610408
- qnrB32_2_JN173054 -> qnrB32_1_JN173054
+ aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
+ aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
+ mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
+ mcr-3.1_KY924928 -> mcr-3.1_1_KY924928
+ cfrB_1_KR610408 -> cfr(B)_3_KR610408
+ qnrB32_2_JN173054 -> qnrB32_1_JN173054
2018-05-23 Deleted:
- aph(3'')-Ib_2_AF024602
+ aph(3'')-Ib_2_AF024602
2018-05-22 Added:
- ere(A)_6_DQ157752
- ere(D)_1_KP265721
- vga(A)LC_3_FN806791
- erm(U)_1_NG_047843
- erm(37)_1_AL123456
- poxtA_1_MF095097
- fexA_2_AM408573
- sul4_1_MG649393
+ ere(A)_6_DQ157752
+ ere(D)_1_KP265721
+ vga(A)LC_3_FN806791
+ erm(U)_1_NG_047843
+ erm(37)_1_AL123456
+ poxtA_1_MF095097
+ fexA_2_AM408573
+ sul4_1_MG649393
2018-04-15 Deleted:
- erm(33)_2_AJ313523
- Modified:
- vga(C)_1_GQ205627 -> vga(D)_1_GQ205627
- vga(C)_2_NC_013034 -> vga(C)_1_FN806792
- cfrB_1_KR610408 -> cfr(B)_3_KR610408
- Added:
- erm(48)_1_LT223129
- mph(F)_1_AM260957
- erm(B)_23_Y00116
- erm(B)_24_M11180
- erm(46)_1_KM679362
- lsa(E)_1_AF408195
- erm(B)_22_X52632
- lnu(P)_1_FJ589781
- msr(E)_1_FR751518
- erm(43)_1_HE650138
- mph(E)_5_DQ839391
- mef(C)_1_AB571865
- lmr(B)_1_X62867
- erm(47)_1_KU612222
- erm(B)_26_AF080450
- mph(G)_1_AB571865
- lnu(G)_1_KX470419
- vat(D)_2_AF368302
- mef(A)_1_AJ971089
- mef(A)_2_U83667
- mef(A)_4_AF274302
- mef(A)_5_AF227520
- vga(A)LC_2_DQ823382
- erm(44)v_1_LN623525
- ere(B)_1_A15097
- erm(44)_1_HG796218
- sal(A)_1_KC693025
- erm(45)_1_LN680996
- erm(33)_1_AJ579365
- vat(E)_6_AF242872
- ere(A)_5_FN396877
- lnu(B)_2_JQ861959
- erm(R)_1_M11276
- erm(B)_25_X72021
- lnu(E)_1_KF287643
- vat(G)_1_GQ205627
- erm(C)_6_X82668
- erm(F)_1_M14730
- erm(33)_1_AJ579365
- cfr(B)_1_KM359439
- cfr(B)_2_KM359438
- cfr(C)_2_CANB01000378
- cmlB1_1_AM296481
- fexB_1_JN201336
- EstDL136_1_JN242251
+ erm(33)_2_AJ313523
+ Modified:
+ vga(C)_1_GQ205627 -> vga(D)_1_GQ205627
+ vga(C)_2_NC_013034 -> vga(C)_1_FN806792
+ cfrB_1_KR610408 -> cfr(B)_3_KR610408
+ Added:
+ erm(48)_1_LT223129
+ mph(F)_1_AM260957
+ erm(B)_23_Y00116
+ erm(B)_24_M11180
+ erm(46)_1_KM679362
+ lsa(E)_1_AF408195
+ erm(B)_22_X52632
+ lnu(P)_1_FJ589781
+ msr(E)_1_FR751518
+ erm(43)_1_HE650138
+ mph(E)_5_DQ839391
+ mef(C)_1_AB571865
+ lmr(B)_1_X62867
+ erm(47)_1_KU612222
+ erm(B)_26_AF080450
+ mph(G)_1_AB571865
+ lnu(G)_1_KX470419
+ vat(D)_2_AF368302
+ mef(A)_1_AJ971089
+ mef(A)_2_U83667
+ mef(A)_4_AF274302
+ mef(A)_5_AF227520
+ vga(A)LC_2_DQ823382
+ erm(44)v_1_LN623525
+ ere(B)_1_A15097
+ erm(44)_1_HG796218
+ sal(A)_1_KC693025
+ erm(45)_1_LN680996
+ erm(33)_1_AJ579365
+ vat(E)_6_AF242872
+ ere(A)_5_FN396877
+ lnu(B)_2_JQ861959
+ erm(R)_1_M11276
+ erm(B)_25_X72021
+ lnu(E)_1_KF287643
+ vat(G)_1_GQ205627
+ erm(C)_6_X82668
+ erm(F)_1_M14730
+ erm(33)_1_AJ579365
+ cfr(B)_1_KM359439
+ cfr(B)_2_KM359438
+ cfr(C)_2_CANB01000378
+ cmlB1_1_AM296481
+ fexB_1_JN201336
+ EstDL136_1_JN242251
2018-04-13 Added:
- aac(6')-Ib_2_M23634
- aac(6')-Ib-11_1_AY136758
- aac(6')-30-aac(6')-Ib'_1_AJ584652
- aac(6')-Iaj_1_AB709942
- aac(6')-Ian_1_AP014611
- aac(6')-Iak_1_AB894482
- aac(6')-Ib-Hangzhou_1_FJ503047
- aac(6')-Ib-Suzhou_1_EU085533
- aac(6')-Iid_1_AJ584700
- aac(6')-Iih_1_AJ584701
- aac(6')-Iz_2_AB971834
- aac(6')-29b_1_AF263519
- aac(6')-29a_1_AF263519
- aac(6')-Iaa_1_NC_003197
- aac(6')-Ih_2_KT778788
- aac(6')-Ix_1_AF031332
- aac(6')-Il_1_U13880
- aac(6')-Ia_2_M86913
- aac(6')-Iag_1_AB472901
- aac(2')-IIa_1_AB669090
- kamB_1_AJ629123
- grmO_1_AY524043
- fmrO_1_Q08325
- grmB_1_M55521
- kgmB_1_S60108
- sgm_1_M87057
- aph(3')-VI_2_APPJ01000012
- aph(3')-IX_1_APPN01000061
- aadA13_2_NC010643
- aadA11_2_AJ567827
- aadA10_2_AM087405
- aadA7_2_AB114632
- aadA2_1_NC010870
- aadD_2_M19465
- aph(2'')-Ib_2_AF207840
- aph(7'')-Ia_1_X03615
- aph(9)-Ia_2_CR628337
- aph(6)-Ia_2_Y00459
- aph(6)-Id_1_M28829
- aph(6)-Id_3_AB109805
- aph(6)-Id_4_CP000971
- aph(6)-Id_5_18676889
- aph(3'')-Ia_2_AP009493
- aph(3'')-Ia_3_M37378
- aph(3'')-Ib_1_M28829
- aph(3'')-Ib_2_AF024602
- aph(3'')-Ib_3_AF321550
- aph(3'')-Ib_4_AF313472
- aadE-Cc_1_CP013733
- ant(2'')-Ia_2_JF826500
- ant(2'')-Ia_3_X74412
- ant(2'')-Ia_4_AF458082
- ant(2'')-Ia_5_AY139594
- ant(2'')-Ia_6_AJ871915
- ant(2'')-Ia_7_DQ018384
- ant(2'')-Ia_8_AY920928
- ant(2'')-Ia_9_HM367610
- ant(2'')-Ia_10_HM367617
- ant(2'')-Ia_11_HM367620
- ant(2'')-Ia_12_HQ880250
- ant(2'')-Ia_13_DQ176450
- ant(2'')-Ia_14_DQ266447
- ant(2'')-Ia_15_EF205594
- ant(2'')-Ia_16_HQ386848
- ant(2'')-Ia_17_JTTZ01000034
- ant(2'')-Ia_19_GQ466184
- ant(2'')-Ia_20_AY139599
- ant(2'')-Ia_1_X04555
- aph(3')-VI_1_KC170992
- aph(3')-XV_2_GQ626879
- aph(3')-XV_3_EU165039
- aph(3')-IIIa_1_AF330699
- aph(3')-IIIa_2_AJ490186
- aph(3')-IIIa_3_AB247327
- aph(3')-Va_2_AB211959
- aph(3')-Vb_2_AJ744850
- aph(3')-IIa_2_V00618
- aph(3')-IIb_2_CP006832
- aph(3')-Ia_2_EU287476
- aph(3')-Ia_3_EF015636
- aph(3')-Ia_4_AF498082
- aph(3')-Ia_5_AP004237
- aph(3')-Ia_6_L05392
- aph(3')-Ia_7_X62115
- aph(3')-Ia_8_Y00452
- aph(3')-Ia_9_EU722351
- aph(3')-Ia_10_EU855787
- aph(2'')-Ih_1_KF652096
- aph(2'')-Ig_1_CP004067
- aph(2'')-If_1_KF652097
- aph(2'')-If_2_AY701528
- aph(2'')-Ia_2_AP009486
- aph(2'')-Ia_3_AJ536195
- sul2_21_AB366440
- sul1_38_BX248359
- sul1_39_AY522923
- sul1_36_X15024
- sul1_37_AF188331
- Modified:
- grmA_1_M55520
- aac(3)-Ib-aac(6')-Ib_1_AF355189 -> aac(3)-Ib-aac(6')-Ib'_1_AF355189
- aac(6')-Il_1_Z54241 -> aac(6')-Ip_1_Z54241
- aac(6')-31_1_AJ640197 -> aac(6')-31_1_AM283489
- aac(6')-IIc_1_AF162771 -> aac(6')-IIc_1_NC_012555
- aacA4_1_KM278199 -> aac(6')-Ib3_1_X60321
- QnrB28_1_HM439643 -> qnrB28_1_HM439643
- sul1_1_AY224185 -> sul1_2_U12338
- sul1_3_EU855787
- sul2_2_GQ421466 -> sul2_2_AY034138
- sul1_35_AB281183 -> sul1_35_AB281182
- Deleted:
- aac(6')_1_AY553333
- aac_1_AJ628983
- aac(6')_2_DQ302723
- aac(6')_3_EU912537
- aac(6')-Id_1_X12618
- aacA29_1_AY139599
- aac(6')Ib-cr_3_EF210035
- lsa(A)_2_AY58982
- sul1_2_CP002151
+ aac(6')-Ib_2_M23634
+ aac(6')-Ib-11_1_AY136758
+ aac(6')-30-aac(6')-Ib'_1_AJ584652
+ aac(6')-Iaj_1_AB709942
+ aac(6')-Ian_1_AP014611
+ aac(6')-Iak_1_AB894482
+ aac(6')-Ib-Hangzhou_1_FJ503047
+ aac(6')-Ib-Suzhou_1_EU085533
+ aac(6')-Iid_1_AJ584700
+ aac(6')-Iih_1_AJ584701
+ aac(6')-Iz_2_AB971834
+ aac(6')-29b_1_AF263519
+ aac(6')-29a_1_AF263519
+ aac(6')-Iaa_1_NC_003197
+ aac(6')-Ih_2_KT778788
+ aac(6')-Ix_1_AF031332
+ aac(6')-Il_1_U13880
+ aac(6')-Ia_2_M86913
+ aac(6')-Iag_1_AB472901
+ aac(2')-IIa_1_AB669090
+ kamB_1_AJ629123
+ grmO_1_AY524043
+ fmrO_1_Q08325
+ grmB_1_M55521
+ kgmB_1_S60108
+ sgm_1_M87057
+ aph(3')-VI_2_APPJ01000012
+ aph(3')-IX_1_APPN01000061
+ aadA13_2_NC010643
+ aadA11_2_AJ567827
+ aadA10_2_AM087405
+ aadA7_2_AB114632
+ aadA2_1_NC010870
+ aadD_2_M19465
+ aph(2'')-Ib_2_AF207840
+ aph(7'')-Ia_1_X03615
+ aph(9)-Ia_2_CR628337
+ aph(6)-Ia_2_Y00459
+ aph(6)-Id_1_M28829
+ aph(6)-Id_3_AB109805
+ aph(6)-Id_4_CP000971
+ aph(6)-Id_5_18676889
+ aph(3'')-Ia_2_AP009493
+ aph(3'')-Ia_3_M37378
+ aph(3'')-Ib_1_M28829
+ aph(3'')-Ib_2_AF024602
+ aph(3'')-Ib_3_AF321550
+ aph(3'')-Ib_4_AF313472
+ aadE-Cc_1_CP013733
+ ant(2'')-Ia_2_JF826500
+ ant(2'')-Ia_3_X74412
+ ant(2'')-Ia_4_AF458082
+ ant(2'')-Ia_5_AY139594
+ ant(2'')-Ia_6_AJ871915
+ ant(2'')-Ia_7_DQ018384
+ ant(2'')-Ia_8_AY920928
+ ant(2'')-Ia_9_HM367610
+ ant(2'')-Ia_10_HM367617
+ ant(2'')-Ia_11_HM367620
+ ant(2'')-Ia_12_HQ880250
+ ant(2'')-Ia_13_DQ176450
+ ant(2'')-Ia_14_DQ266447
+ ant(2'')-Ia_15_EF205594
+ ant(2'')-Ia_16_HQ386848
+ ant(2'')-Ia_17_JTTZ01000034
+ ant(2'')-Ia_19_GQ466184
+ ant(2'')-Ia_20_AY139599
+ ant(2'')-Ia_1_X04555
+ aph(3')-VI_1_KC170992
+ aph(3')-XV_2_GQ626879
+ aph(3')-XV_3_EU165039
+ aph(3')-IIIa_1_AF330699
+ aph(3')-IIIa_2_AJ490186
+ aph(3')-IIIa_3_AB247327
+ aph(3')-Va_2_AB211959
+ aph(3')-Vb_2_AJ744850
+ aph(3')-IIa_2_V00618
+ aph(3')-IIb_2_CP006832
+ aph(3')-Ia_2_EU287476
+ aph(3')-Ia_3_EF015636
+ aph(3')-Ia_4_AF498082
+ aph(3')-Ia_5_AP004237
+ aph(3')-Ia_6_L05392
+ aph(3')-Ia_7_X62115
+ aph(3')-Ia_8_Y00452
+ aph(3')-Ia_9_EU722351
+ aph(3')-Ia_10_EU855787
+ aph(2'')-Ih_1_KF652096
+ aph(2'')-Ig_1_CP004067
+ aph(2'')-If_1_KF652097
+ aph(2'')-If_2_AY701528
+ aph(2'')-Ia_2_AP009486
+ aph(2'')-Ia_3_AJ536195
+ sul2_21_AB366440
+ sul1_38_BX248359
+ sul1_39_AY522923
+ sul1_36_X15024
+ sul1_37_AF188331
+ Modified:
+ grmA_1_M55520
+ aac(3)-Ib-aac(6')-Ib_1_AF355189 -> aac(3)-Ib-aac(6')-Ib'_1_AF355189
+ aac(6')-Il_1_Z54241 -> aac(6')-Ip_1_Z54241
+ aac(6')-31_1_AJ640197 -> aac(6')-31_1_AM283489
+ aac(6')-IIc_1_AF162771 -> aac(6')-IIc_1_NC_012555
+ aacA4_1_KM278199 -> aac(6')-Ib3_1_X60321
+ QnrB28_1_HM439643 -> qnrB28_1_HM439643
+ sul1_1_AY224185 -> sul1_2_U12338
+ sul1_3_EU855787
+ sul2_2_GQ421466 -> sul2_2_AY034138
+ sul1_35_AB281183 -> sul1_35_AB281182
+ Deleted:
+ aac(6')_1_AY553333
+ aac_1_AJ628983
+ aac(6')_2_DQ302723
+ aac(6')_3_EU912537
+ aac(6')-Id_1_X12618
+ aacA29_1_AY139599
+ aac(6')Ib-cr_3_EF210035
+ lsa(A)_2_AY58982
+ sul1_2_CP002151
2018-03-20 Added:
- mcr-4.2_2_MG026621
- mcr-5.2_1_MG384740
- mcr-7.1_1_MG267386
- tet_1_M74049
- tet(47)_1_KR857681
- tet(48)_1_KR857682
- tet(49)_1_KR857683
- tet(50)_1_KR857684
- tet(51)_1_KR857685
- tet(52)_1_KR857686
- tet(53)_1_KR857687
- tet(54)_1_KR857688
- tet(55)_1_KR857689
- tet(O)_4_AIOQ01000025
- tet(45)_1_JF837331
- tetA(46)_1_HQ652506
- tetB(46)_1_HQ652506
- tet(57)_1_KP137702
- tet(59)_1_KU736878
- tetA(60)_1_KX000272
- tetB(60)_1_KX000273
- tet(A)_1_AJ313332
- tet(E)_2_EF471995
- tet(E)_1_Y19116
- tet(C)_4_AY043298
- tet(S)_4_AY534326
- tet(O/W)_1_AM889118
- tet(O/W)_2_AM889119
- tet(O/W)_3_AM889120
- tet(O/W)_4_AM889121
- tet(O/W)_5_AM889122
- tet(O/W)-2_1_AY485122
- tet(O/W)-1_1_AY485126
- tet(O/W/O)-3_1_EF065524
- tet(O/W/O)-2_1_AY196920
- tet(O/W/O)-1_1_AY196921
- tet(O/W/32/O)_1_EF065523
- tet(O/W/32/O)_2_FM164392
- tet(O/W/32/O)_3_FR823304
- tet(O/W/32/O)_4_FR824044
- tet(O/W/32/O)_5_JQ740053
- tet(O/W/32/O/W/O)_1_DQ525023
- tet(O/W/32/O/W/O)_2_DQ679926
- tet(O/32/O)_1_JQ740052
- tet(0/32/0)_2_AJ295238
- tet(0/32/0)_3_NZ_AUJS01000017
- tet(0/32/0)_4_AINH01000038
- tet(0/32/0)_5_NZ_AINJ01000054
- tet(0/32/0)_6_AIOQ01000025
- tet(0/32/0)_7_FP929050
- tet(S/M)_1_HM367711
- tet(S/M)_2_AY534326
- tet(W/32/O)_1_AM710601
- tet(W/32/O)_2_AM710602
- tet(W/32/O)_3_AM710603
- tet(W/32/O)_4_AM710604
- tet(W/32/O)_5_AM710605
- Deleted:
- tetO_4_AIOQ01000025
- ort(B)_2_AF061335
- tet(40)_2_FJ158002
- tet(G)_5_AF071555
- tet(E)_2_EF471995
- tetA(P)_2_HQ399624
- Modified:
- ort(B)_1_AF079900 -> otr(B)_1_AF079900
- tet(33)_2_AY255627 -> tet(33)_1_AY255627
- tet(33)_3_DQ390458 -> tet(33)_2_DQ390458
- tet(40)_1_FJ158002
- tet(40)_3_AM419751 -> tet(40)_2_AM419751
- tcr_1_D38215 -> tcr3_1_D38215
- tet(A)_6_AJ313332 -> tet(A)_6_AF534183
- tet(G)_2_AF133139 -> tet(G)_1_AF133139
- tet(G)_3_S52437 -> tet(G)_2_AF133140
- tet(G)_4_AF133140 -> tet(G)_3_S52437
- tet(E)_3_L06940 -> tet(E)_2_L06940
- tet(E)_5_CP000645 -> tet(E)_3_CP000645
- tet(D)_5_X65876 -> tet(D)_2_X65876
- tet(C)_2_AY046276
- tet(C)_9_AY046276 -> tet(C)_3_AF055345
- tet(B)_3_AP000342 -> tet(B)_1_AP000342
- tet(B)_4_AF326777 -> tet(B)_2_AF326777
- tet(B)_5_AJ277653 -> tet(B)_3_AJ277653
- tet(L)_4_M11036 -> tet(L)_3_M11036
- tet(L)_5_D00006 -> tet(L)_4_D00006
- tet(L)_6_X08034 -> tet(L)_5_X08034
- tet(L)_7_D12567 -> tet(L)_6_D12567
- tet(L)_8_X60828 -> tet(L)_7_X60828
- tet(L)_9_AY081910 -> tet(L)_8_AY081910
- tet(K)_4_U38428 -> tet(K)_1_U38656
- tet(K)_5_J01764 -> tet(K)_2_J01764
- tet(Q)_3_U73497
- tet(Q)_4_Z21523
- tetA(P)_3_L20800 -> tetA(P)_2_L20800
- tetA(P)_4_AB001076 -> tetA(P)_3_AB001076
- tet(Y)_5_AB089606 -> tet(Y)_2_AB089606
- tet(W)_4_AJ427422 -> tet(W)_3_AJ427421
- tet(W)_5_AJ427421 -> tet(W)_4_FN396364
- tet(W)_6_FN396364 -> tet(W)_5_AJ427422
+ mcr-4.2_2_MG026621
+ mcr-5.2_1_MG384740
+ mcr-7.1_1_MG267386
+ tet_1_M74049
+ tet(47)_1_KR857681
+ tet(48)_1_KR857682
+ tet(49)_1_KR857683
+ tet(50)_1_KR857684
+ tet(51)_1_KR857685
+ tet(52)_1_KR857686
+ tet(53)_1_KR857687
+ tet(54)_1_KR857688
+ tet(55)_1_KR857689
+ tet(O)_4_AIOQ01000025
+ tet(45)_1_JF837331
+ tetA(46)_1_HQ652506
+ tetB(46)_1_HQ652506
+ tet(57)_1_KP137702
+ tet(59)_1_KU736878
+ tetA(60)_1_KX000272
+ tetB(60)_1_KX000273
+ tet(A)_1_AJ313332
+ tet(E)_2_EF471995
+ tet(E)_1_Y19116
+ tet(C)_4_AY043298
+ tet(S)_4_AY534326
+ tet(O/W)_1_AM889118
+ tet(O/W)_2_AM889119
+ tet(O/W)_3_AM889120
+ tet(O/W)_4_AM889121
+ tet(O/W)_5_AM889122
+ tet(O/W)-2_1_AY485122
+ tet(O/W)-1_1_AY485126
+ tet(O/W/O)-3_1_EF065524
+ tet(O/W/O)-2_1_AY196920
+ tet(O/W/O)-1_1_AY196921
+ tet(O/W/32/O)_1_EF065523
+ tet(O/W/32/O)_2_FM164392
+ tet(O/W/32/O)_3_FR823304
+ tet(O/W/32/O)_4_FR824044
+ tet(O/W/32/O)_5_JQ740053
+ tet(O/W/32/O/W/O)_1_DQ525023
+ tet(O/W/32/O/W/O)_2_DQ679926
+ tet(O/32/O)_1_JQ740052
+ tet(0/32/0)_2_AJ295238
+ tet(0/32/0)_3_NZ_AUJS01000017
+ tet(0/32/0)_4_AINH01000038
+ tet(0/32/0)_5_NZ_AINJ01000054
+ tet(0/32/0)_6_AIOQ01000025
+ tet(0/32/0)_7_FP929050
+ tet(S/M)_1_HM367711
+ tet(S/M)_2_AY534326
+ tet(W/32/O)_1_AM710601
+ tet(W/32/O)_2_AM710602
+ tet(W/32/O)_3_AM710603
+ tet(W/32/O)_4_AM710604
+ tet(W/32/O)_5_AM710605
+ Deleted:
+ tetO_4_AIOQ01000025
+ ort(B)_2_AF061335
+ tet(40)_2_FJ158002
+ tet(G)_5_AF071555
+ tet(E)_2_EF471995
+ tetA(P)_2_HQ399624
+ Modified:
+ ort(B)_1_AF079900 -> otr(B)_1_AF079900
+ tet(33)_2_AY255627 -> tet(33)_1_AY255627
+ tet(33)_3_DQ390458 -> tet(33)_2_DQ390458
+ tet(40)_1_FJ158002
+ tet(40)_3_AM419751 -> tet(40)_2_AM419751
+ tcr_1_D38215 -> tcr3_1_D38215
+ tet(A)_6_AJ313332 -> tet(A)_6_AF534183
+ tet(G)_2_AF133139 -> tet(G)_1_AF133139
+ tet(G)_3_S52437 -> tet(G)_2_AF133140
+ tet(G)_4_AF133140 -> tet(G)_3_S52437
+ tet(E)_3_L06940 -> tet(E)_2_L06940
+ tet(E)_5_CP000645 -> tet(E)_3_CP000645
+ tet(D)_5_X65876 -> tet(D)_2_X65876
+ tet(C)_2_AY046276
+ tet(C)_9_AY046276 -> tet(C)_3_AF055345
+ tet(B)_3_AP000342 -> tet(B)_1_AP000342
+ tet(B)_4_AF326777 -> tet(B)_2_AF326777
+ tet(B)_5_AJ277653 -> tet(B)_3_AJ277653
+ tet(L)_4_M11036 -> tet(L)_3_M11036
+ tet(L)_5_D00006 -> tet(L)_4_D00006
+ tet(L)_6_X08034 -> tet(L)_5_X08034
+ tet(L)_7_D12567 -> tet(L)_6_D12567
+ tet(L)_8_X60828 -> tet(L)_7_X60828
+ tet(L)_9_AY081910 -> tet(L)_8_AY081910
+ tet(K)_4_U38428 -> tet(K)_1_U38656
+ tet(K)_5_J01764 -> tet(K)_2_J01764
+ tet(Q)_3_U73497
+ tet(Q)_4_Z21523
+ tetA(P)_3_L20800 -> tetA(P)_2_L20800
+ tetA(P)_4_AB001076 -> tetA(P)_3_AB001076
+ tet(Y)_5_AB089606 -> tet(Y)_2_AB089606
+ tet(W)_4_AJ427422 -> tet(W)_3_AJ427421
+ tet(W)_5_AJ427421 -> tet(W)_4_FN396364
+ tet(W)_6_FN396364 -> tet(W)_5_AJ427422
2018-02-16 Deleted:
- mcr-3.6_1_MF598076
- mcr-3.5_1_MF598079
- mcr-3.4_1_NG055497
- mcr-3.3_1_NG055492
- mcr-3.2_1_NG055493
- mcr-2.2_1_MF176240
- mcr-1.10_1_MF176238
- mcr-5_1_KY807921
- mcr-4_1_MF543359
- mcr-3_1_KY924928
- mcr-1.9_1_KY685071
- mcr-1.8_1_KY683842
- Added:
- mcr_1.8_1_KY683842
- mcr-1.9_1_KY964067
- mcr-1.10_1_MF176238
- mcr-1.11_1_KY853650
- mcr-1.12_1_LC337668
- mcr-2.2_1_NG055496
- mcr-3_1_NG055493
- mcr-3_2_NG055497
- mcr-3.1_KY924928
- mcr-3.2_1_NG055523
- mcr-3.4_1_NG055492
- mcr-3.5_1_MF463699
- mcr-3.10_1_MG214533
- mcr-3.11_1_MG489958
- mcr-4.1_1_MF543359
- mcr-4.2_1_MG581979
- mcr-4.3_1_ERS1801979
- mcr-5_1_KY807921
- mcr-6_1_MF176240
+ mcr-3.6_1_MF598076
+ mcr-3.5_1_MF598079
+ mcr-3.4_1_NG055497
+ mcr-3.3_1_NG055492
+ mcr-3.2_1_NG055493
+ mcr-2.2_1_MF176240
+ mcr-1.10_1_MF176238
+ mcr-5_1_KY807921
+ mcr-4_1_MF543359
+ mcr-3_1_KY924928
+ mcr-1.9_1_KY685071
+ mcr-1.8_1_KY683842
+ Added:
+ mcr_1.8_1_KY683842
+ mcr-1.9_1_KY964067
+ mcr-1.10_1_MF176238
+ mcr-1.11_1_KY853650
+ mcr-1.12_1_LC337668
+ mcr-2.2_1_NG055496
+ mcr-3_1_NG055493
+ mcr-3_2_NG055497
+ mcr-3.1_KY924928
+ mcr-3.2_1_NG055523
+ mcr-3.4_1_NG055492
+ mcr-3.5_1_MF463699
+ mcr-3.10_1_MG214533
+ mcr-3.11_1_MG489958
+ mcr-4.1_1_MF543359
+ mcr-4.2_1_MG581979
+ mcr-4.3_1_ERS1801979
+ mcr-5_1_KY807921
+ mcr-6_1_MF176240
2018-02-16 Modified:
- QnrA1_1_AY070235 -> qnrA1_1_AY070235
- QnrA2_1_HQ449669 -> qnrA2_1_AY675584
- QnrA3_1_DQ058661 -> qnrA3_1_DQ058661
- QnrA4_1_DQ058662 -> qnrA4_1_DQ058662
- QnrA5_1_DQ058663 -> qnrA5_1_DQ058663
- QnrA6_1_DQ151889 -> qnrA7_1_GQ463707
- QnrB1_1_DQ351241 -> qnrB1_1_DQ351241
- QnrB2_1_HM125698 -> qnrB2_1_DQ351242
- QnrB3_1_DQ303920 -> qnrB3_1_DQ303920
- QnrB4_1_DQ303921 -> qnrB4_1_DQ303921
- QnrB5_1_DQ303919 -> qnrB5_1_DQ303919
- QnrB22_1_FJ981621 -> qnrB22_1_FJ981621
- QnrB6_1_EF520349 -> qnrB6_1_EF520349
- QnrB7_1_EU043311 -> qnrB7_1_EU043311
- QnrB8_1_EU043312 -> qnrB8_1_EU043312
- QnrB21_1_FJ611948 -> qnrB21_1_FJ611948
- QnrB10_1_DQ631414 -> qnrB10_1_DQ631414
- QnrB10_2_HM439644 -> qnrB10_2_HM439644
- QnrB13_1_EU273755 -> qnrB13_1_EU273755
- QnrB12_2_AM774474 -> qnrB12_2_AM774474
- QnrB13_1_JN173050 -> qnrB13_1_JN173050
- QnrB14_1_EU273757 -> qnrB14_1_EU273757
- QnrB15_1_EU302865 -> qnrB15_1_EU302865
- QnrB17_1_JN173051 -> qnrB17_1_JN173051
- QnrB18_1_AM919399 -> qnrB18_1_AM919399
- QnrB17_2_AM919398 -> qnrB17_2_AM919398
- QnrB27_1_HM439641 -> qnrB27_1_HM439641
- QnrB19_1_HM146784 -> qnrB19_1_EU432277
- QnrB20_1_AB379831 -> qnrB20_1_AB379831
- QnrB23_1_FJ981622 -> qnrB23_1_FJ981622
- QnrB24_1_HM192542 -> qnrB24_1_HM192542
- QnrB25_1_HQ172108 -> qnrB25_1_HQ172108
- QnrB29_1_HM439649 -> qnrB29_1_HM439649
- QnrB30_1_HM439650 -> qnrB30_1_HM439650
- QnrB31_1_HQ418999 -> qnrB31_1_HQ418999
- QnrB32_2_JN173054 -> qnrB32_2_JN173054
- QnrB33_1_JN173055 -> qnrB33_1_JN173055
- QnrB34_1_JN173056 -> qnrB34_1_JN173056
- QnrB35_1_JN173057 -> qnrB35_1_JN173057
- QnrB36_1_JN173058 -> qnrB36_1_JN173058
- QnrB37_1_JN173059 -> qnrB37_1_JN173059
- QnrB38_1_JN173060 -> qnrB38_1_JN173060
- QnrB40_1_JN166689 -> qnrB40_1_JN166689
- QnrB41_1_JN166690 -> qnrB41_1_JN166690
- QnrC_1_EU917444 -> qnrC_1_EU917444
- QnrS1_1_AB187515 -> qnrS1_1_AB187515
- QnrS3_1_EU077611 -> qnrS3_1_EU077611
- QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
- QnrB42_1_JN680743 -> qnrB42_1_JN680743
- QnrB44_1_JQ349153 -> qnrB44_1_JQ349153
- QnrB45_1_JQ349152 -> qnrB45_1_JQ349152
- QnrB46_1_JQ349154 -> qnrB46_1_JQ349154
- QnrB47_1_JQ349155 -> qnrB47_1_JQ349155
- QnrB48_1_JQ762640 -> qnrB48_1_JQ762640
- QnrB49_1_JQ582718 -> qnrB49_1_JQ582718
- QnrB50_1_JX440357 -> qnrB50_1_JX440357
- QnrB51_1_JX440358 -> qnrB51_1_JX440358
- QnrB52_1_EF488762 -> qnrB52_1_EF488762
- QnrB53_1_HQ704413 -> qnrB53_1_HQ704413
- QnrB54_1_HE820727 -> qnrB54_1_HE820727
- QnrB56_1_JX259317 -> qnrB56_1_JX259317
- QnrB57_1_JX259318 -> qnrB57_1_JX259318
- QnrB58_1_JX259319 -> qnrB58_1_JX259319
- QnrB59_1_JX259320 -> qnrB59_1_JX259320
- QnrB60_1_AB734055 -> qnrB60_1_AB734055
- QnrB61_1_AB734053 -> qnrB61_1_AB734053
- QnrB62_1_JX987101 -> qnrB62_1_JX987101
- QnrB64_1_KC580653 -> qnrB64_1_KC580653
- QnrB65_1_KC580654 -> qnrB65_1_KC580654
- QnrB66_1_KC580655 -> qnrB66_1_KC580655
- QnrB67_1_KC580656 -> qnrB67_1_KC580656
- QnrB68_1_KC580657 -> qnrB68_1_KC580657
- QnrB69_1_KC580658 -> qnrB69_1_KC580658
- QnrB70_1_KC580659 -> qnrB70_1_KC580659
- QnrB71_1_KC580660 -> qnrB71_1_KC580660
- QnrB72_1_KC741443 -> qnrB72_1_KC741443
- QnrVC1_1_EU436855 -> qnrVC1_1_EU436855
- QnrVC3_1_HM015626 -> qnrVC3_1_HM015626
- QnrVC4_1_GQ891757 -> qnrVC4_1_GQ891757
- QnrVC5_1_JN408080 -> qnrVC5_1_JN408080
- QnrVC7_1_KM555152 -> qnrVC7_1_KM555152
- QnrC_1_EU917444 -> qnrC_1_EU917444
- QnrS1_1_AB187515 -> qnrS1_1_AB187515
- QnrS3_1_EU077611 -> qnrS3_1_EU077611
- QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
- QnrS5_1_HQ631377 -> qnrS5_1_HQ631377
- QnrS6_1_HQ631376 -> qnrS6_1_HQ631376
- aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_2_EF636461
- Deleted:
- QnrAS_1_FM178379
- QnrB6_3_EF523819
- QnrB9_1_EF653270
- QnrB11_1_EU136183
- QnrB13_2_EU273756
- QnrB27_2_HM439642
- QnrB29_2_JN173053
- QnrD_1_FJ228229
- QnrS2_1_JF261185
- norA_1_M97169
- QnrB43_1_AFA52643
- qnrE_1_KY073238
- Added:
- qnrA8_1_KY554783
- qnrB6_2_EF523819
- qnrB16_1_EU136183
- qnrB26_1_HQ386846
- qnrS2_1_DQ485530
- qnrB39_1_ABWL02000005
- qnrB43_1_JQ349151
- qnrB55_1_KF730650
- qnrB73_1_KF443075
- qnrB74_1_KJ415247
- qnrB75_1_KP207591
- qnrB76_1_KM985469
- qnrB77_1_KM985470
- qnrB78_1_KM985471
- qnrB79_1_KM985472
- qnrB80_1_KM985473
- qnrB81_1_KX372671
- qnrB82_1_KX372672
- qnrB88_1_KX118608
- qnrVC6_1_KC202804
- qnrD1_1_FJ228229
- qnrD2_1_KF055448
- qnrD3_1_KX130945
- qnrS2_1_DQ485530
- qnrS7_1_KF730651
- qnrS8_1_KF730652
- qnrS9_1_KF732714
- qepA_1_FJ167861
- qepA3_1_JQ064560
- qepA4_1_KX580704
- qnrE1_1_KY073238
+ QnrA1_1_AY070235 -> qnrA1_1_AY070235
+ QnrA2_1_HQ449669 -> qnrA2_1_AY675584
+ QnrA3_1_DQ058661 -> qnrA3_1_DQ058661
+ QnrA4_1_DQ058662 -> qnrA4_1_DQ058662
+ QnrA5_1_DQ058663 -> qnrA5_1_DQ058663
+ QnrA6_1_DQ151889 -> qnrA7_1_GQ463707
+ QnrB1_1_DQ351241 -> qnrB1_1_DQ351241
+ QnrB2_1_HM125698 -> qnrB2_1_DQ351242
+ QnrB3_1_DQ303920 -> qnrB3_1_DQ303920
+ QnrB4_1_DQ303921 -> qnrB4_1_DQ303921
+ QnrB5_1_DQ303919 -> qnrB5_1_DQ303919
+ QnrB22_1_FJ981621 -> qnrB22_1_FJ981621
+ QnrB6_1_EF520349 -> qnrB6_1_EF520349
+ QnrB7_1_EU043311 -> qnrB7_1_EU043311
+ QnrB8_1_EU043312 -> qnrB8_1_EU043312
+ QnrB21_1_FJ611948 -> qnrB21_1_FJ611948
+ QnrB10_1_DQ631414 -> qnrB10_1_DQ631414
+ QnrB10_2_HM439644 -> qnrB10_2_HM439644
+ QnrB13_1_EU273755 -> qnrB13_1_EU273755
+ QnrB12_2_AM774474 -> qnrB12_2_AM774474
+ QnrB13_1_JN173050 -> qnrB13_1_JN173050
+ QnrB14_1_EU273757 -> qnrB14_1_EU273757
+ QnrB15_1_EU302865 -> qnrB15_1_EU302865
+ QnrB17_1_JN173051 -> qnrB17_1_JN173051
+ QnrB18_1_AM919399 -> qnrB18_1_AM919399
+ QnrB17_2_AM919398 -> qnrB17_2_AM919398
+ QnrB27_1_HM439641 -> qnrB27_1_HM439641
+ QnrB19_1_HM146784 -> qnrB19_1_EU432277
+ QnrB20_1_AB379831 -> qnrB20_1_AB379831
+ QnrB23_1_FJ981622 -> qnrB23_1_FJ981622
+ QnrB24_1_HM192542 -> qnrB24_1_HM192542
+ QnrB25_1_HQ172108 -> qnrB25_1_HQ172108
+ QnrB29_1_HM439649 -> qnrB29_1_HM439649
+ QnrB30_1_HM439650 -> qnrB30_1_HM439650
+ QnrB31_1_HQ418999 -> qnrB31_1_HQ418999
+ QnrB32_2_JN173054 -> qnrB32_2_JN173054
+ QnrB33_1_JN173055 -> qnrB33_1_JN173055
+ QnrB34_1_JN173056 -> qnrB34_1_JN173056
+ QnrB35_1_JN173057 -> qnrB35_1_JN173057
+ QnrB36_1_JN173058 -> qnrB36_1_JN173058
+ QnrB37_1_JN173059 -> qnrB37_1_JN173059
+ QnrB38_1_JN173060 -> qnrB38_1_JN173060
+ QnrB40_1_JN166689 -> qnrB40_1_JN166689
+ QnrB41_1_JN166690 -> qnrB41_1_JN166690
+ QnrC_1_EU917444 -> qnrC_1_EU917444
+ QnrS1_1_AB187515 -> qnrS1_1_AB187515
+ QnrS3_1_EU077611 -> qnrS3_1_EU077611
+ QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
+ QnrB42_1_JN680743 -> qnrB42_1_JN680743
+ QnrB44_1_JQ349153 -> qnrB44_1_JQ349153
+ QnrB45_1_JQ349152 -> qnrB45_1_JQ349152
+ QnrB46_1_JQ349154 -> qnrB46_1_JQ349154
+ QnrB47_1_JQ349155 -> qnrB47_1_JQ349155
+ QnrB48_1_JQ762640 -> qnrB48_1_JQ762640
+ QnrB49_1_JQ582718 -> qnrB49_1_JQ582718
+ QnrB50_1_JX440357 -> qnrB50_1_JX440357
+ QnrB51_1_JX440358 -> qnrB51_1_JX440358
+ QnrB52_1_EF488762 -> qnrB52_1_EF488762
+ QnrB53_1_HQ704413 -> qnrB53_1_HQ704413
+ QnrB54_1_HE820727 -> qnrB54_1_HE820727
+ QnrB56_1_JX259317 -> qnrB56_1_JX259317
+ QnrB57_1_JX259318 -> qnrB57_1_JX259318
+ QnrB58_1_JX259319 -> qnrB58_1_JX259319
+ QnrB59_1_JX259320 -> qnrB59_1_JX259320
+ QnrB60_1_AB734055 -> qnrB60_1_AB734055
+ QnrB61_1_AB734053 -> qnrB61_1_AB734053
+ QnrB62_1_JX987101 -> qnrB62_1_JX987101
+ QnrB64_1_KC580653 -> qnrB64_1_KC580653
+ QnrB65_1_KC580654 -> qnrB65_1_KC580654
+ QnrB66_1_KC580655 -> qnrB66_1_KC580655
+ QnrB67_1_KC580656 -> qnrB67_1_KC580656
+ QnrB68_1_KC580657 -> qnrB68_1_KC580657
+ QnrB69_1_KC580658 -> qnrB69_1_KC580658
+ QnrB70_1_KC580659 -> qnrB70_1_KC580659
+ QnrB71_1_KC580660 -> qnrB71_1_KC580660
+ QnrB72_1_KC741443 -> qnrB72_1_KC741443
+ QnrVC1_1_EU436855 -> qnrVC1_1_EU436855
+ QnrVC3_1_HM015626 -> qnrVC3_1_HM015626
+ QnrVC4_1_GQ891757 -> qnrVC4_1_GQ891757
+ QnrVC5_1_JN408080 -> qnrVC5_1_JN408080
+ QnrVC7_1_KM555152 -> qnrVC7_1_KM555152
+ QnrC_1_EU917444 -> qnrC_1_EU917444
+ QnrS1_1_AB187515 -> qnrS1_1_AB187515
+ QnrS3_1_EU077611 -> qnrS3_1_EU077611
+ QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
+ QnrS5_1_HQ631377 -> qnrS5_1_HQ631377
+ QnrS6_1_HQ631376 -> qnrS6_1_HQ631376
+ aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_2_EF636461
+ Deleted:
+ QnrAS_1_FM178379
+ QnrB6_3_EF523819
+ QnrB9_1_EF653270
+ QnrB11_1_EU136183
+ QnrB13_2_EU273756
+ QnrB27_2_HM439642
+ QnrB29_2_JN173053
+ QnrD_1_FJ228229
+ QnrS2_1_JF261185
+ norA_1_M97169
+ QnrB43_1_AFA52643
+ qnrE_1_KY073238
+ Added:
+ qnrA8_1_KY554783
+ qnrB6_2_EF523819
+ qnrB16_1_EU136183
+ qnrB26_1_HQ386846
+ qnrS2_1_DQ485530
+ qnrB39_1_ABWL02000005
+ qnrB43_1_JQ349151
+ qnrB55_1_KF730650
+ qnrB73_1_KF443075
+ qnrB74_1_KJ415247
+ qnrB75_1_KP207591
+ qnrB76_1_KM985469
+ qnrB77_1_KM985470
+ qnrB78_1_KM985471
+ qnrB79_1_KM985472
+ qnrB80_1_KM985473
+ qnrB81_1_KX372671
+ qnrB82_1_KX372672
+ qnrB88_1_KX118608
+ qnrVC6_1_KC202804
+ qnrD1_1_FJ228229
+ qnrD2_1_KF055448
+ qnrD3_1_KX130945
+ qnrS2_1_DQ485530
+ qnrS7_1_KF730651
+ qnrS8_1_KF730652
+ qnrS9_1_KF732714
+ qepA_1_FJ167861
+ qepA3_1_JQ064560
+ qepA4_1_KX580704
+ qnrE1_1_KY073238
2018-02-13 Modified:
- QnrB1_1_EF682133 -> QnrB1_1_DQ351241
+ QnrB1_1_EF682133 -> QnrB1_1_DQ351241
2018-01-22 Added:
- aac(3)-IIa_1_CP023555
- aph(3')-VIj_1_KU922928
- cfr(C)_1_KX686749
+ aac(3)-IIa_1_CP023555
+ aph(3')-VIj_1_KU922928
+ cfr(C)_1_KX686749
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
=====================================
debian-tests-data/db_resfinder/notes.txt
=====================================
@@ -558,6 +558,7 @@ blaCARB-48:Beta-lactam resistance:
blaL:Beta-lactam resistance:
blaCARB-47:Beta-lactam resistance:
blaVMB-1:Beta-lactam resistance:
+blaVMB-2:Beta-lactam resistance:
blaVHW-1:Beta-lactam resistance:
blaVHH-1:Beta-lactam resistance:
blaTER-2:Beta-lactam resistance:
=====================================
debian-tests-data/db_resfinder/phenotype_panels.txt
=====================================
@@ -42,7 +42,7 @@ Tetracycline
:Panel: Escherichia coli
Amikacin
Ampicillin
-Ampicillin+clavulanic acid
+Ampicillin+Clavulanic acid
Azithromycin
Cefepime
Cefotaxime
@@ -132,7 +132,7 @@ Gentamicin
Linezolid
Mupirocin
Penicillin
-Quinupristin+dalfopristin
+Quinupristin+Dalfopristin
Spiramycin
Sulfamethoxazole
Teicoplanin
@@ -150,9 +150,5 @@ Ethambutol
Isoniazid
Levofloxacin
Linezolid
-Rifampin
+Rifampicin
Streptomycin
-
-
-
-
=====================================
debian-tests-data/db_resfinder/phenotypes.txt
=====================================
The diff for this file was not included because it is too large.
=====================================
debian-tests-data/db_resfinder/trimethoprim.fsa
=====================================
@@ -311,16 +311,6 @@ GAAAATGCTTTGCAAGAACTATCTAAAATTACAGATCATGTATATATTTCGGGTGGGGGG
CAAATCTATGAAAGCCTTATTGAAAAAGCAGATATAATTCATCTATCTACTATTCATGTT
GAGGTTGAAGGTGATATTAAATTCCCTATATTACCTGAAGGTTTCAACTTGGTTTTTGAA
CAGTTTTTTGTGTCTAATATAAATTATACATATCAAATTTGGAAAAAAGGCTAA
->dfrA33_1_FM957884
-ATGAACCCGGAATCGGTCCGCATTTATCTGGTCGCTGCCATGGGTGCCAATCGGGTTATT
-GGCAATGGCCCTGATATCCCTTGGAATATCCCTGGTGAGCAAAAGATTTTTCGCAGGCTC
-ACCGAGGGCAAAGTGGTCGTTATGGGCCGCAAGACGTTTGAGTCCATAGGCAAGCCCTTA
-CCAAACCGTCGCACAGTGGTGCTCTCGCGCCAAGCTAGTTATAGCGCTGCTGGTTGTGCA
-GTTGTTTCAACGCTGTCGCAGGCTATTGCCATCGCAGCCGAACACGGCAAGGAACTCTAC
-GTGGCCGGCGGAGCCGAGGTATATGCACTGGCACTACCTCGTGCCGATGGCGTCTTTCTA
-TCTGAGGTACATCAAACCTTCGAGGGTGACGCCTTCTTCCCAGCGCTCGACGCAGCAGAA
-TTCGACGTTGTCTCAGCCGAAACCGTTCAAGCCACAATCACGTACACGCACTCCGTCTAT
-GCACGTCGTAACGGCTAA
>dfrB3_1_X72585
ATGGACCAACACAACAATGGAGTCAGTACTCTAGTTGCTGGCCAGTTTGCGCTCCCATCG
CACGCCACGTTTGGCCTGGGAGATCGCGTGCGCAAGAAATCTGGCGCCGCTTGGCAGGGT
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+resfinder (4.1.6-1) unstable; urgency=medium
+
+ [ Andreas Hasenack ]
+ * Fix collections import under python 3.10+ (Closes: #1005030)
+
+ [ Andreas Tille ]
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Mon, 07 Feb 2022 07:23:31 +0100
+
resfinder (4.1.5-2) unstable; urgency=medium
* Team upload.
=====================================
debian/tests/get-test-data
=====================================
@@ -8,3 +8,6 @@ cd ..
tarball=$(dpkg-parsechangelog --file ../changelog | awk '/^Source:/ {print $2}')_$(dpkg-parsechangelog --file ../changelog | awk '/^Version:/ {print $2}' | cut -f1 -d-).orig-debian-tests-data.tar.bz2
tar --owner=root --group=root --mode=a+rX -cvjSf $tarball data
rm -rf data.zip data/
+
+echo "Now move $tarball next to the new upstream tarball and gbp import it as usual"
+# see https://med-team.pages.debian.net/policy/#embedding-large-test-data
=====================================
run_resfinder.py
=====================================
@@ -106,14 +106,19 @@ parser.add_argument("-ao", "--acq_overlap",
default=30)
parser.add_argument("-l", "--min_cov",
dest="min_cov",
- help="Minimum (breadth-of) coverage of ResFinder",
+ help="Minimum (breadth-of) coverage of ResFinder within the range 0-1.",
type=float,
default=0.60)
parser.add_argument("-t", "--threshold",
dest="threshold",
- help="Threshold for identity of ResFinder",
+ help="Threshold for identity of ResFinder within the range 0-1.",
type=float,
default=0.80)
+parser.add_argument("-nano", "--nanopore",
+ action="store_true",
+ dest="nanopore",
+ help="If nanopore data is used",
+ default=False)
# Point resistance option
parser.add_argument("-c", "--point",
action="store_true",
@@ -143,14 +148,14 @@ parser.add_argument("-u", "--unknown_mut",
default=False)
parser.add_argument("-l_p", "--min_cov_point",
dest="min_cov_point",
- help="Minimum (breadth-of) coverage of Pointfinder. \
+ help="Minimum (breadth-of) coverage of Pointfinder within the range 0-1. \
If None is selected, the minimum coverage of \
ResFinder will be used.",
type=float,
default=None)
parser.add_argument("-t_p", "--threshold_point",
dest="threshold_point",
- help="Threshold for identity of Pointfinder. \
+ help="Threshold for identity of Pointfinder within the range 0-1. \
If None is selected, the minimum coverage of \
ResFinder will be used.",
type=float,
@@ -173,6 +178,14 @@ if(args.point and not args.species):
"species has been provided. Please provide species using the "
"--species option.")
+# Check if coverage/identity parameters are valid
+if(args.min_cov > 1.0 or args.min_cov < 0.0):
+ sys.exit("ERROR: Minimum coverage above 1 or below 0 is not allowed. Please select a minimum coverage within the range 0-1 with the flag -l.")
+
+if(args.threshold > 1.0 or args.threshold < 0.0):
+ sys.exit("ERROR: Threshold for identity of ResFinder above 1 or below 0 is not allowed. Please select a threshold for identity within the range 0-1 with the flag -t.")
+
+
# Create a "sample" name
if(args.inputfasta):
args.inputfasta = os.path.abspath(args.inputfasta)
@@ -377,18 +390,33 @@ if args.acquired is True:
# print("STD RESULT:\n{}".format(json.dumps(std_result)))
else:
- kma_run = acquired_finder.kma(inputfile_1=inputfastq_1,
- inputfile_2=inputfastq_2,
- out_path=out_res_kma,
- db_path_kma=args.db_path_res_kma,
- databases=acquired_finder.databases,
- min_cov=min_cov,
- threshold=args.threshold,
- kma_path=kma,
- sample_name="",
- kma_cge=True,
- kma_apm="p",
- kma_1t1=True)
+ if args.nanopore:
+ kma_run = acquired_finder.kma(inputfile_1=inputfastq_1,
+ inputfile_2=inputfastq_2,
+ out_path=out_res_kma,
+ db_path_kma=args.db_path_res_kma,
+ databases=acquired_finder.databases,
+ min_cov=min_cov,
+ threshold=args.threshold,
+ kma_path=kma,
+ sample_name="",
+ kma_cge=True,
+ kma_apm="p",
+ kma_1t1=True,
+ kma_add_args='-ont -md 5')
+ else:
+ kma_run = acquired_finder.kma(inputfile_1=inputfastq_1,
+ inputfile_2=inputfastq_2,
+ out_path=out_res_kma,
+ db_path_kma=args.db_path_res_kma,
+ databases=acquired_finder.databases,
+ min_cov=min_cov,
+ threshold=args.threshold,
+ kma_path=kma,
+ sample_name="",
+ kma_cge=True,
+ kma_apm="p",
+ kma_1t1=True)
# DEPRECATED
# use std_result
@@ -426,11 +454,15 @@ if args.point is True and args.species:
min_cov_point = args.min_cov
else:
min_cov_point = args.min_cov_point
+ if(args.min_cov_point > 1.0 or args.min_cov_point < 0.0):
+ sys.exit("ERROR: Minimum coverage above 1 or below 0 is not allowed. Please select a minimum coverage within the range 0-1 with the flag -l_p.")
if args.threshold_point is None:
threshold_point = args.threshold
else:
threshold_point = args.threshold_point
+ if(args.threshold_point > 1.0 or args.threshold_point < 0.0):
+ sys.exit("ERROR: Threshold for identity of PointFinder above 1 or below 0 is not allowed. Please select a threshold for identity within the range 0-1 with the flag -t_p.")
finder = PointFinder(db_path=db_path_point, species=point_species,
gene_list=args.specific_gene)
=====================================
scripts/install_resfinder.sh
=====================================
@@ -37,5 +37,5 @@ cge/kma/kma_index -i db_pointfinder/neisseria_gonorrhoeae/*.fsa -o db_pointfinde
cge/kma/kma_index -i db_pointfinder/salmonella/*.fsa -o db_pointfinder/salmonella/salmonella
cge/kma/kma_index -i db_pointfinder/mycobacterium_tuberculosis/*.fsa -o db_pointfinder/mycobacterium_tuberculosis/mycobacterium_tuberculosis
-python3 test/functional_test.py
+python3 tests/functional_test.py
View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/0c4d4daebe6e946ff677ec25722e6cdf46a9f54b...7ff86d790a2495ffff4de5d894a07625459e3ef9
--
View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/0c4d4daebe6e946ff677ec25722e6cdf46a9f54b...7ff86d790a2495ffff4de5d894a07625459e3ef9
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