[med-svn] [Git][med-team/resfinder][upstream] New upstream version 4.1.6

Andreas Tille (@tille) gitlab at salsa.debian.org
Mon Feb 7 06:57:32 GMT 2022



Andreas Tille pushed to branch upstream at Debian Med / resfinder


Commits:
13eb75a2 by Andreas Tille at 2022-02-07T07:21:07+01:00
New upstream version 4.1.6
- - - - -


17 changed files:

- README.md
- + amr_abbreviations.md
- cge/resfinder.py
- debian-tests-data/db_pointfinder/klebsiella/genes.txt
- + debian-tests-data/db_pointfinder/klebsiella/gyrB.fsa
- debian-tests-data/db_pointfinder/klebsiella/resistens-overview.txt
- + debian-tests-data/db_pointfinder/klebsiella/rpsL.fsa
- debian-tests-data/db_resfinder/aminoglycoside.fsa
- debian-tests-data/db_resfinder/antibiotic_classes.txt
- debian-tests-data/db_resfinder/beta-lactam.fsa
- debian-tests-data/db_resfinder/history.txt
- debian-tests-data/db_resfinder/notes.txt
- debian-tests-data/db_resfinder/phenotype_panels.txt
- debian-tests-data/db_resfinder/phenotypes.txt
- debian-tests-data/db_resfinder/trimethoprim.fsa
- run_resfinder.py
- scripts/install_resfinder.sh


Changes:

=====================================
README.md
=====================================
@@ -277,8 +277,10 @@ optional arguments:
   -acq, --acquired      Run resfinder for acquired resistance genes
 	-l MIN_COV, --min_cov MIN_COV
 	                      Minimum (breadth-of) coverage of ResFinder
+						  Valid interval: 0.00-1.00
   -t THRESHOLD, --threshold THRESHOLD
 											  Threshold for identity of ResFinder
+											  Valid interval: 0.00-1.00
   -c, --point           Run pointfinder for chromosomal mutations
   -db_point DB_PATH_POINT, --db_path_point DB_PATH_POINT
                         Path to the databases for PointFinder


=====================================
amr_abbreviations.md
=====================================
@@ -0,0 +1,131 @@
+# Antimicrobial Abbreviations
+
+In ResFinder results where antimicrobial abbreviations are used, it will use the [EUCAST System for Antimicrobial Abbreviations](https://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Disk_test_documents/Disk_abbreviations/EUCAST_system_for_antimicrobial_abbreviations.pdf).
+
+## Abbreviations
+
+| Antimicrobial                 | Abbreviation |
+|-------------------------------|--------------|
+| Amikacin                      | AMI          |
+| Amoxicillin                   | AMO          |
+| Amoxicillin-clavulanate       | AMC          |
+| Ampicillin                    | AMP          |
+| Ampicillin-sulbactam          | AMS          |
+| Avibactam                     | AVI          |
+| Azithromycin                  | AZI          |
+| Aztreonam                     | AZT          |
+| Benzylpenicillin              | BEN          |
+| Cefaclor                      | CCL          |
+| Cefadroxil                    | CDR          |
+| Cefalexin                     | CLE          |
+| Cefazolin                     | CZO          |
+| Cefepime                      | CEP          |
+| Cefixime                      | CIX          |
+| Cefotaxime                    | CTA          |
+| Cefoxitin                     | CXI          |
+| Cefpodoxime                   | CPO          |
+| Ceftaroline                   | CTL          |
+| Ceftazidime                   | CTZ          |
+| Ceftazidime-avibactam         | CTV          |
+| Ceftibuten                    | CTI          |
+| Ceftiofur                     | CTF          |
+| Ceftobiprole                  | CTO          |
+| Ceftolozane-tazobactam        | CTT          |
+| Ceftriaxone                   | CTR          |
+| Cefuroxime                    | CUR          |
+| Chloramphenicol               | CHL          |
+| Ciprofloxacin                 | CIP          |
+| Clarithromycin                | CLA          |
+| Clavulanic acid               | CLV          |
+| Clindamycin                   | CLI          |
+| Cloxacillin                   | CLO          |
+| Colistin                      | COL          |
+| Dalbavancin                   | DAL          |
+| Daptomycin                    | DAP          |
+| Dicloxacillin                 | DIC          |
+| Difloxacin                    | DIF          |
+| Doripenem                     | DOR          |
+| Doxycyline                    | DOX          |
+| Enrofloxacin                  | ENR          |
+| Ertapenem                     | ERT          |
+| Erythromycin                  | ERY          |
+| Florfenicol                   | FLO          |
+| Flucloxacillin                | FLU          |
+| Fosfomycin                    | FOS          |
+| Fusidic acid                  | FUS          |
+| Gamithromycin                 | GAM          |
+| Gentamicin                    | GEN          |
+| Gepotidacin                   | GEP          |
+| Imipenem                      | IMI          |
+| Kanamycin                     | KAN          |
+| Levofloxacin                  | LEV          |
+| Linezolid                     | LIN          |
+| Marbofloxacin                 | MAR          |
+| Mecillinam                    | MEC          |
+| Meropenem                     | MER          |
+| Methicillin                   | MEH          |
+| Metronidazole                 | MET          |
+| Minocycline                   | MIN          |
+| Moxifloxacin                  | MOX          |
+| Mupirocin                     | MUP          |
+| Nalidixic acid                | NAL          |
+| Netilmicin                    | NET          |
+| Nitrofurantoin                | NIT          |
+| Norfloxacin                   | NOR          |
+| Novobiocin                    | NOV          |
+| Ofloxacin                     | OFL          |
+| Orbifloxacin                  | ORB          |
+| Oritavancin                   | ORI          |
+| Oxacillin                     | OXA          |
+| Oxytetracycline               | OXY          |
+| Pefloxacin                    | PEF          |
+| Phenethicillin                | PHN          |
+| Phenoxymethypenicillin        | PHE          |
+| Pipemidic acid                | PIE          |
+| Piperacillin                  | PIP          |
+| Piperacillin-tazobactam       | PIT          |
+| Pirlimycin                    | PIR          |
+| Pradofloxacin                 | PRA          |
+| Quinupristin-dalfopristin     | QUD          |
+| Relabactam                    | REL          |
+| Retapamulin                   | RET          |
+| Rifampicin                    | RIF          |
+| Roxithromycin                 | ROX          |
+| Spectinomycin                 | SPE          |
+| Spectinomycin                 | SPE          |
+| Streptomycin                  | STR          |
+| Streptomycin                  | STR          |
+| Sulbactam                     | SUL          |
+| Sulbactam                     | SUL          |
+| Sulfamethoxazole              | SME          |
+| Sulfamethoxazole              | SME          |
+| Sulfathiazole                 | STH          |
+| Sulfathiazole                 | STH          |
+| Sulfisoxazole                 | SIS          |
+| Sulfisoxazole                 | SIS          |
+| Tazobactam                    | TAZ          |
+| Tazobactam                    | TAZ          |
+| Tedizolid                     | TED          |
+| Tedizolid                     | TED          |
+| Teicoplanin                   | TEI          |
+| Teicoplanin                   | TEI          |
+| Telavancin                    | TEL          |
+| Telavancin                    | TEL          |
+| Telithromycin                 | TEH          |
+| Telithromycin                 | TEH          |
+| Tetracycline                  | TET          |
+| Tetracycline                  | TET          |
+| Tiamulin                      | TIA          |
+| Tiamulin                      | TIA          |
+| Ticarcillin                   | TIC          |
+| Ticarcillin-clavulanate       | TIL          |
+| Tigecycline                   | TIG          |
+| Tildipirosin                  | TID          |
+| Tilmicosin                    | TIM          |
+| Tobramycin                    | TOB          |
+| Trimethoprim                  | TRI          |
+| Trimethoprim-sulfamethoxazole | TRS          |
+| Tulathromycin                 | TUL          |
+| Vaborbactam                   | VAB          |
+| Valnemulin                    | VAL          |
+| Vancomycin                    | VAN          |


=====================================
cge/resfinder.py
=====================================
@@ -547,6 +547,11 @@ if __name__ == '__main__':
                               dest="threshold",
                               help="Blast threshold for identity",
                               default=0.90)
+    parser.add_argument("-nano", "--nanopore",
+                        action="store_true",
+                        dest="nanopore",
+                        help="If nanopore data is used",
+                        default=False)
     args = parser.parse_args()
 
     ##########################################################################
@@ -637,8 +642,12 @@ if __name__ == '__main__':
                            notes=notes_path)
 
         # if input_fastq2 is None, it is ignored by the kma method.
-        kma_run = finder.kma(inputfile_1=input_fastq1,
-                             inputfile_2=input_fastq2)
+        if args.nanopore:
+            kma_run = finder.kma(inputfile_1=input_fastq1,
+                                 inputfile_2=input_fastq2, kma_add_args='-ont -md 5')
+        else:
+            kma_run = finder.kma(inputfile_1=input_fastq1,
+                                 inputfile_2=input_fastq2)
 
         finder.write_results(out_path=out_path, result=kma_run,
                              res_type=ResFinder.TYPE_KMA)


=====================================
debian-tests-data/db_pointfinder/klebsiella/genes.txt
=====================================
@@ -4,4 +4,6 @@ ompK36
 ompK37
 ramR
 gyrA
+gyrB
+rpsL
 parC


=====================================
debian-tests-data/db_pointfinder/klebsiella/gyrB.fsa
=====================================
@@ -0,0 +1,36 @@
+>gyrB
+TTGATGTCGAATTCTTATGACTCCTCCAGTATCAAAGTCCTGAAAGGGCTGGATGCGGTGCGTAAGCGCC
+CGGGTATGTATATCGGCGACACGGATGACGGCACCGGTCTGCACCACATGGTATTCGAGGTTGTGGATAA
+CGCTATCGACGAAGCGCTCGCGGGTTACTGCAAAGATATCGTTGTCACCATCCACAGCGATAACTCCGTC
+TCCGTCCAGGATGACGGCCGCGGCATCCCGACCGGCATTCACCCGGAAGAGGGCGTCTCCGCAGCGGAAG
+TTATCATGACCGTCCTGCACGCTGGCGGTAAATTCGATGATAACTCCTATAAAGTTTCCGGCGGTCTGCA
+CGGCGTAGGCGTCTCGGTGGTTAACGCCCTGTCGCAGAAGCTGGAGCTGGTTATCCAGCGCGATAACAAA
+GTTCACAAGCAGATGTACGAACACGGTGTGCCGCAGGCACCGCTGGCCGTGACTGGCGAAACCGACAAAA
+CCGGCACCATGGTGCGTTTCTGGCCAAGCCTGGAAACCTTCACCAATGTCACCGAATTTGAATATGACAT
+CCTGGCGAAACGCCTGCGCGAGCTGTCGTTCCTGAACTCCGGCGTCTCTATCCGCCTGCGCGATAAGCGC
+GACGGCAAAGAAGACCATTTCCACTACGAAGGCGGCATCAAGGCGTTCGTTGAGTATCTCAACAAGAACA
+AAACGCCGATCCACCCGAATATTTTCTATTTCTCCACCGAAAAAGACGGTATCGGCGTGGAAGTGGCCCT
+GCAGTGGAACGACGGCTTCCAGGAAAACATCTACTGCTTTACCAACAACATTCCGCAGCGTGACGGCGGT
+ACTCACCTCGCCGGCTTCCGCGCGGCGATGACCCGTACTCTTAACGCCTATATGGACAAAGAGGGCTATA
+GCAAAAAAGCGAAAGTCAGCGCCACCGGCGACGATGCGCGTGAAGGCCTGATTGCCGTGGTATCCGTGAA
+GGTGCCGGATCCGAAATTCTCCTCGCAGACCAAAGACAAGCTGGTCTCCTCCGAGGTGAAATCGGCGGTG
+GAGCAGCAGATGAACGAACTGCTGAGCGAATACCTGCTGGAAAATCCATCCGATGCGAAAATCGTGGTCG
+GCAAAATTATTGACGCCGCGCGCGCCCGTGAGGCCGCACGTCGCGCTCGTGAGATGACTCGTCGTAAAGG
+CGCGCTGGATCTGGCAGGCCTGCCGGGCAAACTGGCGGATTGCCAGGAGCGCGACCCGGCGCTGTCCGAA
+CTGTACCTGGTGGAAGGGGACTCCGCGGGCGGCTCTGCTAAACAGGGTCGTAACCGCAAGAACCAGGCGA
+TCCTGCCGCTGAAGGGTAAAATCCTTAACGTTGAGAAAGCCCGCTTCGATAAAATGCTCTCTTCCCAGGA
+AGTGGCGACGCTGATCACCGCGCTGGGCTGCGGCATCGGTCGCGATGAGTACAATCCGGATAAACTGCGC
+TACCACAGCATCATCATCATGACCGATGCGGACGTCGACGGCTCGCACATTCGTACCCTGCTGTTGACCT
+TCTTCTATCGTCAGATGCCGGAGATCGTTGAGCGCGGCCACGTCTACATTGCCCAGCCGCCGCTGTACAA
+AGTGAAGAAAGGCAAGCAGGAACAGTACATTAAAGACGACGAAGCGATGGATCAGTATCAGATCTCCATC
+GCGCTCGACGGTGCGACCCTGCACACCAACGCCAATGCGCCGGCGCTGGCGGGCGAACCGCTGGAAAAAC
+TGGTTGCCGAGTTCAATGCCACCCAGAAAATGATTGGCCGCATGGAGCGCCGCTTCCCGAAAGCGCTGCT
+GAAAGAGCTTATCTATCAGCCGACCCTGACCGAGGCCGACCTGGCGGACGAGCAGAAGGTGACCCGCTGG
+GTGAACACCCTGGTCTCCGAGCTGAACGAGAAAGAACAGCACGGCAGCCAGTGGAAATTCGATCTCCACG
+AGAACAAAGAACTGCAGCATTTTGAGCCGGTTATTCGCGTACGTACCCACGGCGTGGATACCGACTATCC
+GCTGGATAACGAGTTCATTATGGGGCCGGAATATCGTCGTATCTGTGCCCTGGGCGAGAAACTGCGCGGC
+CTGATGGAAGAAGATGCTTACATCGAGCGCGGCGAACGTCGTCAGCCGGTAGCCAGCTTCGAGCAGGCCC
+TGGACTGGCTGGTGAAAGAGTCCCGTCGCGGTCTCTCCATCCAGCGCTATAAAGGTCTGGGCGAGATGAA
+CCCGGATCAGCTGTGGGAAACCACCATGGATCCGGACAGCCGTCGCATGCTGCGCGTGACCGTCAAGGAT
+GCCATCGCTGCCGATCAGCTGTTCACCACCCTGATGGGTGATGCCGTTGAGCCGCGTCGCGCGTTTATCG
+AAGAGAATGCCCTGAAAGCGGCGAATATCGATATTTAA


=====================================
debian-tests-data/db_pointfinder/klebsiella/resistens-overview.txt
=====================================
@@ -1,101 +1,113 @@
 #Gene_ID	Gene_name	Codon_pos	Ref_nuc	Ref_codon	Res_codon	Resistance	PMID	Mechanism	Notes	Required_mut
-ompK36	ompK36	49	GAC	D	S	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	51	GAC	D	N	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	59	CTT	L	V	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	86	ACT	T	V	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	88	AGC	S	G	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	89	TCC	S	T	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	90	AGC	S	D	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	91	GAT	D	K	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	93	GCA	A	S	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	103	AAA	K	*	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	183	GGC	G	D	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	183	GGC	G	S	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	184	GCG	A	M	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	184	GCG	A	P	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	189	GGC	G	T	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	190	GCT	A	W	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	191	CTG	L	Q	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	191	CTG	L	S	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	198	TTC	F	Y	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	200	ACT	T	L	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	207	TTC	F	W	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	207	TTC	F	Y	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	217	GCT	A	S	carbapenem	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	218	AAC	N	H	carbapenem	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	222	ACC	T	L	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	223	GAC	D	G	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	224	GAT	D	E	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	227	CAG	Q	N	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	227	CAG	Q	S	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	228	CTG	L	K	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	228	CTG	L	V	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	229	CTG	L	V	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	229	CTG	L	A	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	232	GAA	E	R	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	235	CAC	H	D	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	254	ACT	T	S	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompk36	260	GCT	A	V	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	304	AAC	N	E	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	354	AGC	S	N	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-acrR	acrR	20	GCT	A	T	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	121	GGT	G	*	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-acrR	acrR	121	GGT	G	V	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-acrR	acrR	122	GAA	E	K	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-acrR	acrR	123	ATG	M	*	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-acrR	acrR	151	GCG	A	V	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	161	CCG	P	R	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	164	GGC	G	A	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	172	TTC	F	S	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	173	CGA	R	G	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	195	CTC	L	V	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	197	TTT	F	I	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	197	TTG	L	L	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	201	AAG	K	M	fluoroquinolone	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	204	TTC	F	L	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ramR	ramR	19	GCG	A	V	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ramR	ramR	44	CTG	L	R	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ramR	ramR	103	CAC	H	Q	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	111	CTC	L	R	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ramR	ramR	113	GAG	E	K	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ramR	ramR	122	CAG	Q	*	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ramR	ramR	135	CAG	Q	*	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ramR	ramR	156	CTG	L	V	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	175	GAG	E	D	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	177	ATC	I	T	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	178	GCC	A	D	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	181	TTT	F	*	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	190	GAG	E	*	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	193	GCC	A	S	tigecycline	27219271		Under development. Phenotype should be used with caution.	
-ramR	ramR	195	TGA	*	K	tigecycline	28533243		Under development. Phenotype should be used with caution.	
-ompK35	ompK35	174	CAG	Q	*	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	70	ATT	I	M	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	128	ATT	I	M	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	230	AAC	N	G	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	233	ATG	M	Q	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	234	ACC	T	H	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	235	CAG	Q	Y	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	237	AAC	N	H	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	239	CGC	R	K	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	244	GAA	E	D	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	274	AAT	N	S	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	275	GAC	D	T	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	277	GTG	V	I	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-gyrA	gyrA	83	TCG	S	L	ciprofloxacin	22633335		Under development. Phenotype should be used with caution.	
-gyrA	gyrA	83	TCG	S	F	ciprofloxacin	22633335		Under development. Phenotype should be used with caution.	
-gyrA	gyrA	87	GAC	D	A	ciprofloxacin	22633335		Under development. Phenotype should be used with caution.	
-gyrA	gyrA	87	GAC	D	N	ciprofloxacin	22633335		Under development. Phenotype should be used with caution.	
-gyrA	gyrA	87	GAC	D	G	ciprofloxacin	22633335		Under development. Phenotype should be used with caution.	
-parC	parC	80	AGT	S	I	ciprofloxacin	22633335		Under development. Phenotype should be used with caution.	
-parC	parC	84	GAA	E	K	ciprofloxacin	22633335		Under development. Phenotype should be used with caution.	
-#Indels										
-ompK36	ompK36	393	-	ins	SG	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	393	-	ins	FGGD	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	552	-	ins	GAL	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	702	-	ins	L	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	702	-	ins	P	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-ompK36	ompK36	933	-	ins	R	cephalosporins	25245001		Under development. Phenotype should be used with caution.	
-acrR	acrR	382	CAGGCCCAGCGCCAG	del	QAQRQ	norfloxacin,ciprofloxacin	12936981		Under development. Phenotype should be used with caution.	
-acrR	acrR	432	ACCCTGAAAGAA	del	TLKE	norfloxacin,ciprofloxacin	12936981		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	712	-	ins	TERY	carbapenem	22282462		Under development. Phenotype should be used with caution.	
-ompK37	ompK37	824	-	ins	SSTNGG	carbapenem	22282462		Under development. Phenotype should be used with caution.	
\ No newline at end of file
+ompK36	ompK36	49	GAC	D	S	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	51	GAC	D	N	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	59	CTT	L	V	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	86	ACT	T	V	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	88	AGC	S	G	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	89	TCC	S	T	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	90	AGC	S	D	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	91	GAT	D	K	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	93	GCA	A	S	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	103	AAA	K	*	carbapenem	22282462		Potential contribution to increased resistance
+ompK36	ompK36	183	GGC	G	D	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	183	GGC	G	S	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	184	GCG	A	M	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	184	GCG	A	P	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	189	GGC	G	T	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	190	GCT	A	W	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	191	CTG	L	Q	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	191	CTG	L	S	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	198	TTC	F	Y	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	200	ACT	T	L	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	207	TTC	F	W	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	207	TTC	F	Y	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	217	GCT	A	S	carbapenem	25245001		Potential contribution to increased resistance
+ompK36	ompK36	218	AAC	N	H	carbapenem	25245001		Potential contribution to increased resistance
+ompK36	ompK36	222	ACC	T	L	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	223	GAC	D	G	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	224	GAT	D	E	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	227	CAG	Q	N	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	227	CAG	Q	S	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	228	CTG	L	K	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	228	CTG	L	V	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	229	CTG	L	V	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	229	CTG	L	A	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	232	GAA	E	R	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	235	CAC	H	D	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	254	ACT	T	S	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompk36	260	GCT	A	V	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	304	AAC	N	E	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	354	AGC	S	N	cephalosporins	25245001		Potential contribution to increased resistance
+acrR	acrR	20	GCT	A	T	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	121	GGT	G	*	tigecycline	27219271		Potential contribution to increased resistance
+acrR	acrR	121	GGT	G	V	tigecycline	27219271		Potential contribution to increased resistance
+acrR	acrR	122	GAA	E	K	tigecycline	27219271		Potential contribution to increased resistance
+acrR	acrR	123	ATG	M	*	tigecycline	27219271		Potential contribution to increased resistance
+acrR	acrR	151	GCG	A	V	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	161	CCG	P	R	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	164	GGC	G	A	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	172	TTC	F	S	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	173	CGA	R	G	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	195	CTC	L	V	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	197	TTT	F	I	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	197	TTG	L	L	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	201	AAG	K	M	fluoroquinolone	12936981		Potential contribution to increased resistance
+acrR	acrR	204	TTC	F	L	tigecycline	28533243		Potential contribution to increased resistance
+ramR	ramR	19	GCG	A	V	tigecycline	28533243		Potential contribution to increased resistance
+ramR	ramR	44	CTG	L	R	tigecycline	28533243		Potential contribution to increased resistance
+ramR	ramR	103	CAC	H	Q	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	111	CTC	L	R	tigecycline	28533243		Potential contribution to increased resistance
+ramR	ramR	113	GAG	E	K	tigecycline	28533243		Potential contribution to increased resistance
+ramR	ramR	122	CAG	Q	*	tigecycline	28533243		Potential contribution to increased resistance
+ramR	ramR	135	CAG	Q	*	tigecycline	28533243		Potential contribution to increased resistance
+ramR	ramR	156	CTG	L	V	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	175	GAG	E	D	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	177	ATC	I	T	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	178	GCC	A	D	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	181	TTT	F	*	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	190	GAG	E	*	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	193	GCC	A	S	tigecycline	27219271		Potential contribution to increased resistance
+ramR	ramR	195	TGA	*	K	tigecycline	28533243		Potential contribution to increased resistance
+ompK35	ompK35	174	CAG	Q	*	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	70	ATT	I	M	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	128	ATT	I	M	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	230	AAC	N	G	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	233	ATG	M	Q	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	234	ACC	T	H	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	235	CAG	Q	Y	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	237	AAC	N	H	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	239	CGC	R	K	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	244	GAA	E	D	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	274	AAT	N	S	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	275	GAC	D	T	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	277	GTG	V	I	carbapenem	22282462		Potential contribution to increased resistance
+rpsL	rpsL	43	AAG	K	T	streptomycin	unpublished	Unconfirmed resistance phenotype
+rpsL	rpsL	43	AAG	K	N	streptomycin	unpublished	Unconfirmed resistance phenotype
+rpsL	rpsL	43	AAG	K	R	streptomycin	unpublished	Unconfirmed resistance phenotype
+rpsL	rpsL	88	AAG	K	R	streptomycin	unpublished	Unconfirmed resistance phenotype
+#Depends what is the original
+gyrB	gyrB	359	TCT	S	A	fluoroquinolone	Unconfirmed resistance phenotype
+gyrB	gyrB	359	TCC	S	A	fluoroquinolone	Unconfirmed resistance phenotype
+gyrB	gyrB	359	TCG	S	A	fluoroquinolone	Unconfirmed resistance phenotype
+gyrB	gyrB	359	TCA	S	A	fluoroquinolone	Unconfirmed resistance phenotype
+#gyrB	gyrB	367	?	S	T	fluoroquinolone	Unconfirmed resistance phenotype
+gyrA	gyrA	83	TCC	S	L	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA	gyrA	83	TCC	S	F	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA	gyrA	83	TCC	S	Y	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA	gyrA	83	TCC	S	I	ciprofloxacin	30445211	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA	gyrA	87	GAC	D	A	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA	gyrA	87	GAC	D	N	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+gyrA	gyrA	87	GAC	D	G	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+parC	parC	80	AGC	S	I	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+parC	parC	84	GAA	E	K	ciprofloxacin	22633335	Target modification	Combinations of gyrA-83 and other mutations normally need for high-level fluoroquinolone resistance
+#Indels
+ompK36	ompK36	393	-	ins	SG	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	393	-	ins	FGGD	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	552	-	ins	GAL	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	702	-	ins	L	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	702	-	ins	P	cephalosporins	25245001		Potential contribution to increased resistance
+ompK36	ompK36	933	-	ins	R	cephalosporins	25245001		Potential contribution to increased resistance
+acrR	acrR	382	CAGGCCCAGCGCCAG	del	QAQRQ	norfloxacin,ciprofloxacin	12936981		Potential contribution to increased resistance
+acrR	acrR	432	ACCCTGAAAGAA	del	TLKE	norfloxacin,ciprofloxacin	12936981		Potential contribution to increased resistance
+ompK37	ompK37	712	-	ins	TERY	carbapenem	22282462		Potential contribution to increased resistance
+ompK37	ompK37	824	-	ins	SSTNGG	carbapenem	22282462		Potential contribution to increased resistance


=====================================
debian-tests-data/db_pointfinder/klebsiella/rpsL.fsa
=====================================
@@ -0,0 +1,7 @@
+>rpsL
+AGGAGCTATTTAATGGCAACAATTAACCAGCTGGTACGCAAACCACGCGCGCGCAAAGTTGCAAAGAGCA
+ACGTGCCAGCGCTGGAAGCCTGCCCGCAGAAACGTGGCGTATGTACTCGCGTATATACCACCACTCCTAA
+GAAACCGAACTCCGCACTGCGTAAAGTTTGCCGTGTGCGTCTGACTAACGGTTTCGAAGTCACCTCCTAC
+ATCGGTGGTGAAGGTCACAACCTGCAGGAGCACTCCGTGATCCTGATCCGTGGCGGTCGTGTTAAAGACC
+TTCCGGGTGTTCGTTACCACACCGTTCGTGGTGCGCTTGACTGCTCCGGCGTTAAAGACCGTAAGCAGGC
+TCGCTCCAAGTACGGCGTGAAGCGTCCTAAGGCTTAA


=====================================
debian-tests-data/db_resfinder/aminoglycoside.fsa
=====================================
@@ -80,16 +80,6 @@ TTGGGAACCAAGCTGGTTCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACC
 AAGATCCAAACGGACCCGTCGCCGAGCAACTTGCGAGCGATCCGATGCTACGAGAAAGCG
 GGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATGGTCCAGCCGTGTACATGGTTCAA
 ACACGCCAGGCATTCGAGCGAACACGCAGTGATGCCTAA
->aac(6')-Ib-Suzhou_1_EU085533
-ATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGCTAAATCGATCTCATATCGTCGAG
-TGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGAACAGTACTTGCCA
-AGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCGATT
-GGGTATGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGATGGTGGGAAGAAGAAACC
-GATCCAGGAGTACGCGGAATAGACCAGTTACTGGCGAATGCATCACAACTGGGCAAAGGC
-TTGGGAACCAAGCTGGTTCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACC
-AAGATCCAAACGGACCCGTCGCCGAGCAACTTGCGAGCGATCCGATGCTACGAGAAAGCG
-GGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATGGTCCAGCCGTGTACATGGTTCAA
-ACACGCCAGGCATTCGAGCGAACACGCATGGATGCCTAA
 >aac(6')-Iid_1_AJ584700
 ATGATTATCAGTGAGTTTGATCGTGAGAATATTGTCTTGCGAGATCAGCTTGCAGATCTT
 TTAAGATTGACTTGGCCTGATGAGTATGGAACAGAGCCGATGAAAGAAGTCGAACAGTTG
@@ -3555,43 +3545,6 @@ GCGTGGCTCGACGACGCGCTGCGCCCCGCCTACCGCGCCGCGGGGTTCGAGATCCGGACG
 AGCGAGATCGTGGACGGGGAGGTCCCGCACCAGACGAGCTGGGGGCAGCACCTCACGCTC
 GCTTCGGGCCGGCGGACGCGGCTGCTCACGGCCGAGGCGATCGGCGGCTCGGCCAGCGCT
 GCACCAGGCTAG
->ant(3'')-Ih-aac(6')-IId_1_AF453998
-ATGAGTAACGCAGTACCCGCCGAGATTTCGGTACAGCTATCACTGGCTCTCAACGCCATCGAGCGTCATC
-TGGAATCAACGTTGCTGGCCGTGCATTTGTACGGCTCTGCACTGGACGGTGGCCTGAAGCCATACAGTGA
-TATTGATTTGCTGGTTACTGTGGCTGCACAGCTCGATGAGACTGTCCGACAAGCCCTGGTCGTAGATCTC
-TTGGAAATTTCTGCCTCCCCTGGCCAAAGTGAGGCTCTCCGCGCCTTGGAAGTTACCATCGTCGTGCATG
-GTGATGTTGTCCCTTGGCGTTATCCGGCCAGACGGGAACTGCAATTCGGGGAGTGGCAGCGTAAAGACAT
-TCTTGCGGGCATCTTCGAGCCCGCCACAACCGATGTTGATCTGGCTATTCTGCTAACTAAAGTAAGGCAG
-CATAGCCTTGCATTGGCAGGTTCGGCCGCAGAGGATTTCTTTAACCCAGTTCCGGAAGGCGATCTATTCA
-AGGCATTGAGCGACACTCTGAAACTATGGAATTCGCAGCCGGATTGGGAAGGCGATGAGCGGAATGTAGT
-GCTTACCTTGTCTCGCATTTGGTACAGCGCAGCAACCGGCAAGATCGCACCGAAGGATATCGTTGCCAAC
-TGGGCAATTGAGCGTCTGCCAGATCAACATAAGCCCGTACTGCTTGAAGCCCGGCAGGCTTATCTTGGAC
-GAGGAGAAGATTGCTTGGCCTCACGCGCGGATCAGTTGGCGGCGTTCGTTCACTTCGTGAAACATGAAGC
-CACTAAATTGCTTGGTGCCATGCCAGTGATGTCTAAAACAAAGTTAGGCATCACAAAGTACAGCATCGTG
-ACCAACAGCAACGATTCCGTCACACTGCGCCTCATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGC
-TAAATCGATCTCATATCGTCGAGTGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGA
-ACAGTACTTGCCAAGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCG
-ATTGGGTATGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGATGGTGGGAAGAAGAAACCGATCCAG
-GAGTACGCGGAATAGACCAGTCACTGGCGAATGCATCACAACTGGGCAAAGGCTTGGGAACCAAGCTGGT
-TCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACCAAGATCCAAACGGACCCGTCGCCGAGC
-AACTTGCGAGCGATCCGATGCTACGAGAAAGCGGGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATG
-GTCCAGCCGTGTACATGGTTCAAACACGCCAGGCATTCGAGCGAACACGCAGTGATGCCTAA
->aph(4)-Ib_1_X03615
-GTGACACAAGAATCCCTGTTACTTCTCGACCGTATTGATTCGGATGATTCCTACGCGAGCCTGCGGAACG
-ACCAGGAATTCTGGGAGCCGCTGGCCCGCCGAGCCCTGGAGGAGCTCGGGCTGCCGGTGCCGCCGGTGCT
-GCGGGTGCCCGGCGAGAGCACCAACCCCGTACTGGTCGGCGAGCCCGACCCGGTGATCAAGCTGTTCGGC
-GAGCACTGGTGCGGTCCGGAGAGCCTCGCGTCGGAGTCGGAGGCGTACGCGGTCCTGGCGGACGCCCCGG
-TGCCGGTGCCCCGCCTCCTCGGCCGCGGCGAGCTGCGGCCCGGCACCGGAGCCTGGCCGTGGCCCTACCT
-GGTGATGAGCCGGATGACCGGCACCACCTGGCGGTCCGCGATGGACGGCACGACCGACCGGAACGCGCTG
-CTCGCCCTGGCCCGCGAACTCGGCCGGGTGCTCGGCCGGCTGCACAGGGTGCCGCTGACCGGGAACACCG
-TGCTCACCCCCCATTCCGAGGTCTTCCCGGAACTGCTGCGGGAACGCCGCGCGGCGACCGTCGAGGACCA
-CCGCGGGTGGGGCTACCTCTCGCCCCGGCTGCTGGACCGCCTGGAGGACTGGCTGCCGGACGTGGACACG
-CTGCTGGCCGGCCGCGAACCCCGGTTCGTCCACGGCGACCTGCACGGGACCAACATCTTCGTGGACCTGG
-CCGCGACCGAGGTCACCGGGATCGTCGACTTCACCGACGTCTATGCGGGAGACTCCCGCTACAGCCTGGT
-GCAACTGCATCTCAACGCCTTCCGGGGCGACCGCGAGATCCTGGCCGCGCTGCTCGACGGGGCGCAGTGG
-AAGCGGACCGAGGACTTCGCCCGCGAACTGCTCGCCTTCACCTTCCTGCACGACTTCGAGGTGTTCGAGG
-AGACCCCGCTGGATCTCTCCGGCTTCACCGATCCGGAGGAACTGGCGCAGTTCCTCTGGGGGCCGCCGGA
-CACCGCCCCCGGCGCCTGA
 >aac(6')Ib-cr_3_EF210035
 ATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGCTAAATCGATCTCATATCGTCGAGTGGTGGGGCG
 GAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGAACAGTACTTGCCAAGCGTTTTAGCGCAAGAGTC


=====================================
debian-tests-data/db_resfinder/antibiotic_classes.txt
=====================================
@@ -4,7 +4,7 @@ Aminoglycoside	Unknown Aminoglycoside	Gentamicin	Gentamicin c	Tobramycin	Strepto
 Analog of d-alanine	Unknown Analog of d-alanine	D-Cycloserine
 Beta-lactam	Unknown Beta-lactam	Amoxicillin	Amoxicillin+Clavulanic acid	Ampicillin	Ampicillin+Clavulanic acid	Aztreonam	Cefazolin	Cefepime	Cefixime	Cefotaxime	Cefotaxime+Clavulanic acid	Cefoxitin	Ceftaroline	Ceftazidime	Ceftazidime+Avibactam	Ceftriaxone	Cefuroxime	Cephalothin	Ertapenem	Imipenem	Meropenem	Penicillin	Piperacillin	Piperacillin+Tazobactam	Temocillin	Ticarcillin	Ticarcillin+Clavulanic acid	Cephalotin	Piperacillin+Clavulanic acid
 Diarylquinoline	Unknown Diarylquinoline	Bedaquiline
-Fluoroquinolone	Unknown Fluoroquinolone	Ciprofloxacin	Nalidixic acid
+Quinolone	Unknown Quinolone	Ciprofloxacin	Nalidixic acid	Fluoroquinolone
 Folate pathway antagonist	Unknown Folate pathway antagonist	Sulfamethoxazole	Trimethoprim
 Fosfomycin	Unknown Fosfomycin	Fosfomycin
 Glycopeptide	Unknown Glycopeptide	Vancomycin	Teicoplanin
@@ -14,7 +14,7 @@ Lincosamide	Unknown Lincosamide	Lincomycin	Clindamycin
 Macrolide	Unknown Macrolide	Carbomycin	Azithromycin	Oleandomycin	Spiramycin	Tylosin	Telithromycin	Erythromycin
 Nitroimidazole	Unknown Nitroimidazole	Metronidazole
 Oxazolidinone	Unknown Oxazolidinone	Linezolid
-Phenicol	Unknown Phenicol	Chloramphenicol	Florfenicol
+Amphenicol	Unknown Amphenicol	Chloramphenicol	Florfenicol
 Pleuromutilin	Unknown Pleuromutilin	Tiamulin
 Polymyxin	Unknown Polymyxin	Colistin
 Pseudomonic acid	Unknown Pseudomonic acid	Mupirocin
@@ -27,9 +27,9 @@ Synthetic derivative of nicotinamide	Unknown Synthetic derivative of nicotinamid
 Tetracycline	Unknown Tetracycline	Tetracycline	Doxycycline	Minocycline	Tigecycline
 Thioamide	Unknown Thioamide	Ethionamide
 Unspecified	Unknown Unspecified	Ethambutol
-UNDER_DEVELOPMENT	Cephalosporins	Carbapenem	Norfloxacin	Fluoroquinolone
+UNDER_DEVELOPMENT	Cephalosporins	Carbapenem	Norfloxacin	Ceftiofur
 # Class Disinfectants
-Aldehydes	Unknown Aldehydes	Formaldehyde
-Quaternary Ammonium Compounds	Unknown Quaternary Ammonium Compounds	Benzylkonium Chloride	Chlorhexidine	Cetylpyridinium Chloride	Ethidium Bromide
-Peroxides	Unknown Peroxides	Hydrogen peroxide
+Aldehyde	Unknown Aldehyde	Formaldehyde
+Quaternary Ammonium Compound	Unknown Quaternary Ammonium Compound	Benzylkonium Chloride	Chlorhexidine	Cetylpyridinium Chloride	Ethidium Bromide
+Peroxide	Unknown Peroxide	Hydrogen peroxide
 Heat	Temperature


=====================================
debian-tests-data/db_resfinder/beta-lactam.fsa
=====================================
@@ -6213,22 +6213,6 @@ GCAGCGAGCATTCAGGCAGGACTGCCTGCTTCCTGGGTTGTGGGGGATAAAACCGGCAGC
 GGTGACTATGGCACCACCAACGATATCGCGGTGATTTGGCCAAAAGATCGTGCGCCGCTG
 ATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCAGAAAGCCGTCGCGATGTATTA
 GCGTCGGCGGCTAAAATCGTCACCGACGGTTTGTAA
->blaCTX-M-63_1_EU660216
-ATGAGACATCGCGTTAAGCGGATGATGCTAATGACAACGGCCTGTATTTCGCTGTTGCTG
-GGGAGTGCGCCGCTGTATGCGCAGGCGAACGACGTTCAGCAAAAGCTGGCGGCGCTGGAG
-AAAAGCAGCGGGGGGCGGTTGGGAGTGGCGCTGATTGACACCGCCGATAACGCACAGACG
-CTCTACCGCGCCGACGAGCGCTTTGCCATGTGCAGCACCAGTAAGGTGATGGCAGCCGCG
-GCGGTGCTCAAGCAAAGTGAAACGCAAAAGAACGTGTTGAGTCAGAAGGTTGAGATTAAA
-TCCTCGGACCTGATTAACTACAATCCCATCGCTGAAAAACACGTCAACGGCACGATGACG
-CTGGCGGAATTGAGCGCCGCGGCGTTGCAGTACAGCGATAATACGGCCATGAACAAGCTG
-ATTGCCCATCTTGGGGGGCCGGATAAAGTGACGGCGTTTGCCCGTGCGATTGGGGATGAC
-ACCTTCCGGCTCGATCGTACTGAGCCGACGCTCAACACCGCGATCCCCGGCGACCCGCGC
-GATACCACCACGCCATTAGCGATGGCGCAGACGCTTCGCCATCTGACGTTGGGCAGTGCC
-TTAGGTGAAACTCAGCGTGCGCAACTGGTAACGTGGCTGAAAGGCAACACCACCGGTGCT
-GCCAGCATTCAGGCTGGGCTACCCACATCGTGGGTTGTCGGGGATAAAACCGGCAGCGGT
-GATTATGGTACGACGAATGACATCGCCGTCATCTGGCCGGAAGGGCGTGCGCCGCTTATT
-CTGGTCACTTACTTCACCCAACCGGAGCAGAAGGCAGAAAATCGTCGTGACGTGCTCGCG
-GCTGCCGCGAAAATCGTCACCGACGGTTATTAA
 >blaCTX-M-64_1_AB284167
 ATGGTTAAAAAATCACTGCGCCAGTTCACGCTGATGGCGACGGCAACCGTCACGCTGTTG
 TTAGGAAGTGTGCCGCTGTATGCGCAAACGGCGGACGTACAGCAAAAACTTGCCGAATTA
@@ -13500,21 +13484,6 @@ CAGGAGCGGAAAGCTTATCGACTATATGTCAAATCCGGTTGGGGCATGGATGTGGAACCG
 CAAGTCGGCTGGCTCACCGGCTGGGTTGAAACACCGCAGGCTGAAATCGTGGCATTTTCG
 CTGAATATGCAGATGCAAAATGGTATAGATCCGGCGATCCGCCTTGAAATTTTGCAGCAG
 GCTTTGGCCGAATTAGGGCTTTATCCAAAAGCTGAAGGATGA
->blaOXA-347_1_JN086160
-ATGAAAAATATTTTATTTGTAGTTTTTATTTCAATGATATTTTTATTTGTTTGCTGTAAC
-ACAACAACGAATAAAAACATAATTGAAACAGAAATTTCTGATTTTGACAAAATTTTAGAT
-AGTTTTCAAGTAAATGGTTCAATTCTAATTTATGATAACGACAAGAATACTTTTTACTCA
-AATGACTTTGATTGGGCTAAAAACGGAAAATTACCTGCATCAACATTCAAAATTCCAAAT
-TCTATAATTGCTGTTGAATTAGGCATTATTGAAAATGATACAACTATTTTAAAATGGAAT
-GGCGAGCAGAGAAAAATGGATATTTGGGAAAAAGATTTATCATTTAAAGATGCTTTTAGA
-ATTTCCTGTGTTCCTTGCTATCAGGAAATTGCAAGGAAAATCGGAACAATTAAAATGAAA
-GAATATTTAGAAAAATTTGAGTATAAAAATATGATTTTTGACAGTTTAACGATTGACAAT
-TTTTGGCTTGAAGGAAATTCAAAAATATCTCAAAAACAACAAATCGACTTTTTAAGGAAA
-TTCTATTTTTCAAAATTTCCAATTTCTGATAGGACAATAAAGATTGTCAAAAATATTATG
-GAAATTGAGCGAACTGAAAATTACATTTTAAGCGGTAAGACTGGATTAAGTTCGATAGAA
-GAAAAATATAATGGTTGGTTTGTTGGTTATGTTGAAACAAAATCTAATGTTTATTTTTTT
-GCAACAAATGTAATTCCGACAGACGGATTGAATGTTGATGATTTTATTTCATCGAGAATT
-AATGTAACAAAAAATGCGTTAAAGCAAATGAATATAATGAAATGA
 >blaOXA-348_1_KF297577
 ATGTATAAAAAAGCCCTTATCGTTGCAACAAGTATCCTATTTTTATCCGCCTGTTCTTCC
 AATATGGTCAAACAACATCAAATACACTCTATTTCTGCCAATAAAAATTCAGAAGAAATT
@@ -30596,27 +30565,6 @@ ACGCCGATTGTTCCCCCGTTACCGCCACAGGAAAATGTGTGGATTAATAAGACCGGATCA
 ACTAACGGCTTCGGTGCCTATATTGCGTTTGTTCCTGCTAAGAAGATGGGGATCGTGATG
 CTGGCTAACAAAAACTACTCAATCGATCAGCGAGTGACGGTGGCGTATAAAATCCTGAGC
 TCATTGGAAGGGAATAAGTAG
->blaACC-4_2_EF504260
-ATGCAGAACACATTGAAGCTGTTATCCGTGATTACCTGTCTGGCAGCAACTGTCCAAGGT
-GCTCTGGCTGCTAATATCGATGAGAGCAAAATTAAAGACACCGTTGATGACCTGATCCAG
-CCGCTGATGCAGAAGAATAATATTCCCGGTATGTCGGTCGCAGTGACCGTCAACGGTAAA
-AACTACATTTATAACTATGGGTTAGCGGCAAAACAGCCTCAGCAGCCGGTTACGGAAAAT
-ACGTTATTTGAAGTGGGTTCGCTGAGTAAAACGTTTGCTGCCACCTTGGCGTCCTATGCG
-CAGGTGAGCGGTAAGCTGTCTTTGGATCAAAGCGTTAGCCATTACGTTCCAGAGTTGCGT
-GGCAGCAGCTTTGACCACGTTAGCGTACTCAATGTGGGCACGCATACCTCAGGCCTACAG
-CTATTTATGCCGGAAGATATTAAAAATACCACACAGCTGATGGCTTATCTAAAAGCATGG
-AAACCTGCCGATGCGGCTGGAACCCATCGCGTTTATTCCAATATCGGTACTGGTTTGCTA
-GGGATGATTGCGGCGAAAAGTCTGGGTGTGAGCTATGAAGATGCGATTGAGAAAACCCTC
-CTTCCTCAGTTAGGCATGCATCACAGCTACTTGAAGGTTCCGGCTGACCAGATGGAAAAC
-TATGCGTGGGGCTACAACAAGAAAGATGAGCCAGTGCACGGGAATATGGAGATTTTGGGT
-AACGAAGCTTATGGTATCAAAACCACCTCCAGCGACTTGTTACGCTACGTGCAAGCCAAT
-ATGGGGCAGTTAAAGCTTGATGCTAATGCCAAGATGCAACAGGCTCTGACAGCCACCCAC
-ACCGGCTATTTCAAATCGGGTGAGATTACTCAGGATCTGATGTGGGAGCAGCTGCCATAT
-CCGGTTTCTCTGCCGAATTTGCTCACCGGTAACGATATGGCGATGACGAAAAGCGTGGCT
-ACGCCGATTGTTCCGCCGTTACCGCCACAGGAAAATGTGTGGATTAATAAGACCGGATCA
-ACTAACGGCTTCGGTGCCTATATTGCGTTTGTTCCTGCTAAGAAGATGGGGATCGTGATG
-CTGGCTAACAAAAACTACTCAATCGATCAGCGAGTGACGGTGGCGTATAAAATCCTGAGC
-TCATTGGAAGGGAATAAGTAG
 >blaACC-4_1_KM087831
 ATGCGTAAAAAAATGCAGAACACATTGAAGCTGTTATCCGTGATTACCTGTCTGGCAGCA
 ACTGTCCAAGGTGCTCTGGCTGCTAATATCGATGAGAGCAAAATTAAAGACACCGTTGAT
@@ -31926,21 +31874,6 @@ ATCGAGCAGCAGGGCGATGCCGCGCTGTATGCCAAGACCGGCGTCGCCACCGAATACCAG
 CCGGAGATCGGTTGGTGGGTCGGCTGGGTGGAGCGTGCGGGGCATGTCTATGCATTCGCG
 CTGAACATCGACATGCCGCGCGAGGGCGATATGGCCAAGCGCATTCCGCTGGGCAAGCAG
 TTGATGCGGGCGCTCGAGGTGTGGCCGGCACCGTGA
->blaOXA-60a_1_AY662675
-ATGCTGTCTCGCTACTCGAAGACCCTCGCGTTTGCCGTGGTGGCCTGCACGCTCGCAATA
-AGCACCGCCACCGCTCATGCCGAGCTGGTCGTGCGCAATGACCTCAAGCGCGTGTTCGAC
-GACGCCGGCGTCTCCGGCACCTTCGTGCTGATGGACATCACCGCCGACCGTACCTATGTC
-GTCGATCCGGCGCGTGCCGCGCGGAGCATCCATCCGGCTTCGACGTTCAAGATTCCGAAC
-AGCCTGATCGCCTTCGACACCGGGGCCGTGCGCGACGATCAGGAAGTGCTGCCCTACGGC
-GGCAAGCCGCAGCCTTACGAGCAGTGGGAGCACGACATGGCGTTACCCGAGGCGATTCGC
-CTGTCGGCCGTGCCGATCTATCAGGAAGTCGCGCGCCGCGTTGGCTTCGAGCGCATGCAG
-GCTTATGTCGATGCGTTCGACTACGGCAATCGCCAGCTCGGCAGCGCGATCGACCAGTTC
-TGGCTGCGTGGCCCGCTGGAGATTTCCGCTTTCGAAGAAGCACGCTTCACCAGCCGCATG
-GCGCTCAAGCAGTTGCCGGTGAAGCCGCGCACGTGGGACATGGTCCAGCGCATGCTGTTG
-ATCGAGCAGCAGGGCGATGCCGCGCTATATGCCAAGACCGGCGTCGCCACCGAATACCAG
-CCGGAGATCGGTTGGTGGGCCGGCTGGGTGGAGCGTGCGGGGCATGTCTATGCATTCGCG
-CTGAACATCGACATGCCGCGCGAGGGCGATATGGCCAAGCGCATTCCGCTGGGCAAGCAG
-TTGATGCGGGCGCTCGAGGTGTGGCCGGCACCGTGA
 >blaCARB-1_1_AF313471
 ATGAAGTTTTTATTGGCATTTTCGCTTTTAATACCATCCGTGGTTTTTGCAAGTAGTTCA
 AAGTTTCAGCAAGTTGAACAAGACGTTAAGGCAATTGAAGTTTCTCTTTCTGCTCGTATA
@@ -31989,22 +31922,6 @@ CCGGCGGGATGGAACATTGCGGATCGCTCAGGTGCTGGCGGATTTGGTGCTCGGAGTATT
 ACAGCAGTTGTGTGGAGTGAGCATCAAGCCCCAATTATTGTGAGCATCTATCTAGCTCAA
 ACACAGGCTTCAATGGCAGAGCGAAATGATGCGATTGTTAAAATTGGTCATTCAATTTTT
 GACGTTTATACATCACAGTCGCGCTGA
->blaCARB-4_1_FJ785525
-ATGAAGCTTTTACTGGTATTTTCGCTTTTAATACCGTCTATGGTGTTTGCAAATAGTTCA
-AAGTTTCAACAGGTTGAACAAGATGCTAAGGTAATTGAAGCATCTCTTTCTGCGCATATA
-GGGATTTCTGTTCTTGATACTCAAACTGGAGAGTATTGGGATTACAATGGCAATCAGCGT
-TTTCCTTTGACAAGTACTTTTAAAACAATAGCTTGTGCTAAATTATTATATGATGCTGAG
-CAAGGGGAAATAAACCCTAAGAGTACAATTGAGATCAAAAAAGCAGATCTTGTGACCTAT
-TCTCCCGTAATAGAAAAGCAAGTAGGACAAGCAATAACGCTCGATGATGCGTGTTTTGCA
-ACTATGACGACAAGTGATAATGCAGCAGCAAATATCATCCTAAATGCCCTAGGAGGTCCT
-GAAAGCGTGACGGATTTTCTAAGACAAATCGGAGATAAAGAAACCCGTCTAGACCGTATT
-GAACCTGAATTAAATGAAGGCAAGCTTGGTGATTTGAGGGATACGACAACTCCTAATGCA
-ATAGTGAATACTTTAAATGAATTATTATTTGGTTCCACATTGTCTCAAGATGGCCAGAAA
-AAATTAGAGTATTGGATGGTGAATAATCAAGTCACTGGTAATTTATTGCGGTCAGTATTG
-CCAGAGGGATGGAATATTGCGGATCGTTCAGGTGCTGGCGGATTTGGTGCTCGGAGTATT
-ACAGCCGTTGTTTGGAGTGAAGCTCAATCCCCAATCATAGTTAGTATCTATCTAGCGCAA
-ACAGAGGCTTCAATAGCAGATCGAAATGATGCAATTGTTAAAATTGGTCGTTCAATTTTT
-GAAGTTTATTCATCACAATCGCGTTGA
 >blaCARB-5_1_AF135373
 ATGAACGTACGTAAACACAAGGCTAGTTTTTTTAGCGTAGTAATTACTTTTTTATGTCTC
 ACGCTATCATTAAATGCTAATGCAACAGACTCAGTACTTGAAGCGGTTACCAATGCTGAA
@@ -32797,6 +32714,18 @@ ATAATATTGTTGTTTGGCTACCTAATGAAAAGATATTGTTTGGAGGTTGTTTTGTAAAAAGCCTTAAGAA
 TAAAAATTTAGGTTATACAGGCGACGCAAATATTAGTGAATGGCCAAACTCTATGCAAAAAGTCATTAAT
 CGTTATCCTGATGCCAAATTAGTTGTTCCAGGACATGGTGAAGTCGGAGATGTTAGCTTACTGAAGCATA
 CTCAAGCATTAGCTTTGTCTGCAGCGGCCTCTAACAAGAAAATCAACAAGGACTAA
+>blaVMB-2_1_MN865127
+ATGAATTTTCTGATAAAAAATATTCTGCTCATTACTCTTTTTGTTCCTTTTGTAACAGCAGCAAACAATA
+CAGACACTAAAACGCTGGAGGTTAAACAATTAACCGATAATATCTATCAGCATATCTCATATAAACATGT
+TGAGCCTTGGGGGTTTATTGGCGCGTCTGGCTTAATTGTAGTCGATGGAGATGCGGCATACCTGATTGAC
+ACTCCTTGGACGACCAAAGCAACCAATCAACTTATTGAATGGATTGAAGATAGAGGTCTCGTACTAAAAA
+GCGCAATAGTAACTCACTTTCATGAAGATGCGAGTGGTGATTTACCACTTTTAAATGATTTAAAAGTTAA
+CACTTATGCCACTTCACTCACTAATCAACTTCTTAAACTCAATAACAAAGAAATTTCGAATACTGAAATA
+TCGAGCAATGAACTCAAAATTTTCAACGGCATTGCGACAGTGTATTATCCTGGCCCAGGCCATACTGAAG
+ATAACATCGTTGTTTGGTTACCGAATGAAAAGCTATTATTTGGCGGTTGCTTTGTTAAAAGCCTCCGTAA
+TAAAAGTCTAGGTTACACTGGAGATGCAAATATAGGCGAATGGTCGAACTCTATTCAAAGAGTGCTGCAA
+CGCTATCCAGATATAGTCACTGTAGTGCCTGGGCATGGTCAGGTTGGAGACGTTAGTTTACTCCTTCATA
+CACAAAAATTAGCATCATCCGATAAGACTTCTGACAAATAG
 >blaLMB-1_1_MH475146
 ATGACGTTAGCTAAAAGTTTTCGCTGTTTTTGCCTTGTAACTACATTAAGTTCGATGGCTATGCTGGCCG
 GTTGCGGCGGCACAGCCCCGGTAACAGTATTAAGCCCACCGCCAGCAGACTGGGTTAACAGCTGTAAAGA
@@ -32995,48 +32924,6 @@ GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
 GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
 TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
 GTTGTTCACTGA
->blaBEL3_1_GQ202694
-ATGAAACTGCTGCTCTACCCGTTATTGCTGTTCCTTGTCATTCCAGCCTTTGCCCAGGCGGACTTTGAAC
-ATGCCATTTCAGATCTTGAGGCGCACAATCAAGCCAAGATCGGAGTGGCCCTAGTTAGTGAAAATGGCAA
-CCTGATTCAAGGGTATCGTGCGAATGAAAGGTTCGCGATGTGCTCAACTTTCAAGTTGCCGTTGGCCGCT
-CTTGTTCTGAGTCGCATTGACGCTGGGGAAGAGAATCCTGAGCGCAAGCTTCATTACGATTCCGCGTTCC
-TTGAAGAGTACGCCCCAGCCGCAAAACGGTATGTGGCAACTGGATATATGACTGTAACTGAGGCAATTCA
-ATCCGCCCTCCAACTCAGCGACAATGCCGCAGCTAACCTGCTGTTAAAAGAGGTTGGCGGCCCACCTTTA
-TTGACAAAGTATTTCCGTAGCCTGGGTGATAAAGTAAGTCGCCTTGATCGTATTGAATCGACTTTGAACA
-CCAATACGCCCGGCGATGAAAGAGATACAACAACGCCCATGTCCATGGCACAGACTGTGTCAAAGCTGAT
-TTTTGGAGACACGTTGACATATAAATCCAAGGGGCAGCTAAGGCGATTACTCATCGGCAATCAGACCGGG
-GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
-GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
-TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
-GTTGTTCACTGA
->blaBEL2_1_FJ666063
-ATGAAACTGCTGCTCTACCCGTTATTGCTGTTCCTTGTCATTCCAGCCTTTGCCCAGGCGGACTTTGAAC
-ATGCCATTTCAGATCTTGAGGCGCACAATCAAGCCAAGATCGGAGTGGCCCTAGTTAGTGAAAATGGCAA
-CCTGATTCAAGGGTATCGTGCGAATGAAAGGTTCGCGATGTGCTCAACTTTCAAGTTGCCGTTGGCCGCT
-CTTGTTCTGAGTCGCATTGACGCTGGGGAAGAGAATCCTGAGCGCAAGCTTCATTACGATTCCGCGTTCC
-TTGAAGAGTACGCCCCAGCCGCAAAACGGTATGTGGCAACTGGATATATGACTGTAACTGAGGCAATTCA
-ATCCGCCCTCCAACTCAGCGACAATGCCGCAGCTAACCTGCTGTTAAAAGAGGTTGGCGGCCCACCTTTA
-TTGACAAAGTATTTCCGTAGCCTGGGTGATAAAGTAAGTCGCTTTGATCGTATTGAACCGACTTTGAACA
-CCAATACGCCCGGCGATGAAAGAGATACAACAACGCCCATGTCCATGGCACAGACTGTGTCAAAGCTGAT
-TTTTGGAGACACGTTGACATATAAATCCAAGGGGCAGCTAAGGCGATTACTCATCGGCAATCAGACCGGG
-GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
-GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
-TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
-GTTGTTCACTGA
->blaBEL1_1_KF745070
-ATGAAACTGCTGCTCTACCCGTTATTGCTGTTCCTTGTCATTCCAGCCTTTGCCCAGGCGGACTTTGAAC
-ATGCCATTTCAGATCTTGAGGCGCACAATCAAGCCAAGATCGGAGTGGCCCTAGTTAGTGAAAATGGCAA
-CCTGATTCAAGGGTATCGTGCGAATGAAAGGTTCGCGATGTGCTCAACTTTCAAGTTGCCGTTGGCCGCT
-CTTGTTCTGAGTCGCATTGACGCTGGGGAAGAGAATCCTGAGCGCAAGCTTCATTACGATTCCGCGTTCC
-TTGAAGAGTACGCCCCAGCCGCAAAACGGTATGTGGCAACTGGATATATGACTGTAACTGAGGCAATTCA
-ATCCGCCCTCCAACTCAGCGACAATGCCGCAGCTAACCTGCTGTTAAAAGAGGTTGGCGGCCCACCTTTA
-TTGACAAAGTATTTCCGTAGCCTGGGTGATAAAGTAAGTCGCCTTGATCGTATTGAACCGACTTTGAACA
-CCAATACGCCCGGCGATGAAAGAGATACAACAACGCCCATGTCCATGGCACAGACTGTGTCAAAGCTGAT
-TTTTGGAGACACGTTGACATATAAATCCAAGGGGCAGCTAAGGCGATTACTCATCGGCAATCAGACCGGG
-GACAAAACCATTCGAGCTGGCTTGCCTGATTCATGGGTAACGGGTGACAAGACAGGCTCGTGTGCGAATG
-GCGGCCGTAACGATGTGGCGTTTTTTATAACCACTGCCGGAAAAAAATATGTTCTTTCTGTATATACCAA
-TGCACCTGAATTGCAAGGCGAGGAAAGGGCGTTATTAATTGCTTCTGTAGCAAAGTTAGCACGTCAATAT
-GTTGTTCACTGA
 >blaCARB-4_1_U14749
 ATGAAGCTTTTACTGGTATTTTCGCTTTTAATACCGTCTATGGTGTTTGCAAATAGTTCAAAGTTTCAAC
 AGGTTGAACAAGATGCTAAGGTAATTGAAGCATCTCTTTCTGCGCATATAGGGATTTCTGTTCTTGATAC
@@ -33051,21 +32938,3 @@ GTCACTGGTAATTTATTGCGGTCAGTATTGCCAGAGGGATGGAATATTGCGGATCGTTCAGGTGCTGGCG
 GATTTGGTGCTCGGAGTATTACAGCCGTTGTTTGGAGTGAAGCTCAATCCCCAATCATAGTTAGTATCTA
 TCTAGCGCAAACAGAGGCTTCAATAGCAGATCGAAATGATGCAATTGTTAAAATTGGTCGTTCAATTTTT
 GAAGTTTATTCATCACAATCGCGTTGA
->blaCMY-150_2_NG_060513
-ATGATGAAAAAATCGATATGCTGCGCACTGCTGCTGACAGCCTCTTTCTCCACGTTTGCTGCCGCAAAAA
-CAGAACAACAAATTGCCGATATCGTTAACCGCACCATCACACCACTGATGCAGGAGCAGGCTATTCCGGG
-TATGGCCGTGGCGATTATCTACGAGGGGAAACCTTATTACTTTACCTGGGGTAAAGCCGATATCGCCAAT
-AACCACCCAGTCACGCAGCAAACGCTGTTTGAGCTAGGGTCGGTCAGTAAGACGTTTAACGGCGTGTTGG
-GCGGCGACGCTATCGCCCGCGGCGAAATTAAGCTCAGCGATCCGGTCACGAAATACTGGCCAGAACTGAC
-AGGCAAACAGTGGCGGGGTATCAGCCTGCTGCACTTAGCCACCTATACAGCGGGTGGCCTGCCGCTGCAG
-ATCCCCGATGACGTTACGGATAAAGCCGAATTACTGCGCTTTTATCAAAACTGGCAACCACAATGGACTC
-CGGGCGCTAAGCGTCTTTACGCTAACTCCAGCATTGGTCTGTTTGGTGCGCTGGTGGTAAAACATTCAGG
-TATGAGCTACGAAGAGGCAATGACCAGACGCGTCCTGCAACCATTAAAACTGGCGCATACCTGGATTACG
-GTTCCGCAAAGCGAACAAAAAAATTATGCCTGGGGCTATCGCGAAGGGAAGCCTGTACACGTTTCTCCGG
-GGCAACTTGACGCCGAAGCCTATGGCGTGAAATCCAGCGTTATCGATATGGCCCGCTGGGTTCAGGCCAA
-CATGGACGCCAGCCTCGTTCAGGAGAAAACGCTCCAGCAGGGCATTGAGCTTGCGCAGTCTCGCTACTGG
-CGTATTGGTGATATGTACCAGGGATTAGGCTGGGAGATGCTGAACTGGCCGCTGAAAGCTGATTCGATCA
-TCAACGGCAGCGACAGCAAAGTGGCATTGGCAGCGCTTCCCGCCGTTGAGGTAAACCCGCCAGCACCTGC
-CGTGAAAGCCTCATGGGTGCATAAAACAGGATCCACAGGCGGATTTGGCAGCTACGTTGCCTTCGTTCCA
-GAAAAAAACCTTGGCATCGTAATGTTGGCAAACAAAAGCTACCCCAACCCGGCTCGCGTCGAGGCGGCCT
-GGCGCATTCTTGAAAAACTGCAATAA


=====================================
debian-tests-data/db_resfinder/history.txt
=====================================
@@ -1,1625 +1,1674 @@
-# ResFinder Database History
-#
-# This is the history file of ResFinderDB summarizing commits adding, deleting
-# and modifying gene entries based on the Bitbucket commits
-# https://bitbucket.org/genomicepidemiology/resfinder_db/commits/
-# dating back to 2018/01/01.
-#
-# First column informs about the date of the commit.
-# Second column covers the type of change (Added, Deleted, Modified)
-# followed by the implicated gene entries.
-# Note: The 'Modified' category covers a modification to an existing gene entry.
-# If an arrow (->) is written, the header of the gene entry has been updated
-# including possible sequence modifications.
-#
-#
+# ResFinder Database History	
+#	
+# This is the history file of ResFinderDB summarizing commits adding, deleting	
+# and modifying gene entries based on the Bitbucket commits	
+# https://bitbucket.org/genomicepidemiology/resfinder_db/commits/	
+# dating back to 2018/01/01.	
+#	
+# First column informs about the date of the commit.	
+# Second column covers the type of change (Added, Deleted, Modified)	
+# followed by the implicated gene entries.	
+# Note: The 'Modified' category covers a modification to an existing gene entry.	
+# If an arrow (->) is written, the header of the gene entry has been updated	
+# including possible sequence modifications.	
+#	
+#	
 #Date	Commit
+2021-08-04	Added:
+	blaVMB-2_1_MN865127
 2021-04-13	Modified:
-		dfrA19_2_EU855787 -> dfrA19_2_EU855687
+	dfrA19_2_EU855787 -> dfrA19_2_EU855687
 2021-03-11	Added:
-		Gar_1_NG_070891
-		mcr-1.26_1_NG_068217
-		mcr-1.27_1_NG_068218
-		fosL1_1_MN464149
-		erm(50)_1_LC473083
-		catT_1_MW030510
-		qnrB89_1_MT544491
-		qnrB91_1_AP023150
-		qnrB90_1_MG182074
+	Gar_1_NG_070891
+	mcr-1.26_1_NG_068217
+	mcr-1.27_1_NG_068218
+	fosL1_1_MN464149
+	erm(50)_1_LC473083
+	catT_1_MW030510
+	qnrB89_1_MT544491
+	qnrB91_1_AP023150
+	qnrB90_1_MG182074
 2021-03-09	Added:
-		aac(3)-IIa_6_CP023555
-		blaCMY-150_2_NG_060513
-		blaCARB-4_1_U14749
-		mupA_1_X75439
-		mupA_2_GU237136
-		mupB_1_JQ231224
-		blaBEL1_1_KF745070
-		blaBEL2_1_FJ666063
-		blaBEL3_1_GQ202694
-		blaBEL4_1_KX388629
-		blaBKC_1_KP689347
-		blaIMI-5_1_KX858825
-		Deleted:
-		blaGPA-1_1_AJ877225
-		blaIMI-5_1_KT599915
+	aac(3)-IIa_6_CP023555
+	blaCMY-150_2_NG_060513
+	blaCARB-4_1_U14749
+	mupA_1_X75439
+	mupA_2_GU237136
+	mupB_1_JQ231224
+	blaBEL1_1_KF745070
+	blaBEL2_1_FJ666063
+	blaBEL3_1_GQ202694
+	blaBEL4_1_KX388629
+	blaBKC_1_KP689347
+	blaIMI-5_1_KX858825
+	Deleted:
+	blaGPA-1_1_AJ877225
+	blaIMI-5_1_KT599915
 2021-02-19	Added:
-		formA_1_X73835
-		qacA_1_AB566410
-		qacB_1_AB566412
-		qacC_1_M37889
-		qacD_1_M37888
-		qacE_1_X68232
-		qacF_1_Z17326
-		qacG_1_EU622633
-		qacH_1_FJ172381
-		qacA4_1_MK046687
-		qacJ_1_NG_048046
-		qacZ_1_NG_061384
-		sitABCD_1_AY598030
-		OqxA_1_EU370913
-		OqxB_1_EU370913
-		ClpL_1_CP023753
+	formA_1_X73835
+	qacA_1_AB566410
+	qacB_1_AB566412
+	qacC_1_M37889
+	qacD_1_M37888
+	qacE_1_X68232
+	qacF_1_Z17326
+	qacG_1_EU622633
+	qacH_1_FJ172381
+	qacA4_1_MK046687
+	qacJ_1_NG_048046
+	qacZ_1_NG_061384
+	sitABCD_1_AY598030
+	OqxA_1_EU370913
+	OqxB_1_EU370913
+	ClpL_1_CP023753
 2020-10-28	Added:
-		grdA_1_QJX10702
+	grdA_1_QJX10702
 2020-10-20	Deleted:
-		blaCMY-150_2
-		Modified:
-		blaLMB-1_1_MH475146
+	blaCMY-150_2
+	Modified:
+	blaLMB-1_1_MH475146
 2020-10-05	Added:
-		Cfr(D)_1_NG_067192
-		Cfr(E)_1_NG_070225
+	Cfr(D)_1_NG_067192
+	Cfr(E)_1_NG_070225
 2020-08-28	Added:
-		ant(3'')-Ih-aac(6')-IId_1_AF453998
-		aph(4)-Ib_1_X03615
-		aac(6')Ib-cr_3_EF210035
-		blaIMI-4_1_NG_049167
-		ARR-8_1_KC199968
+	ant(3'')-Ih-aac(6')-IId_1_AF453998
+	aph(4)-Ib_1_X03615
+	aac(6')Ib-cr_3_EF210035
+	blaIMI-4_1_NG_049167
+	ARR-8_1_KC199968
 2020-06-02	Added:
-		blaVMB-1_1_MN719868
-		blaLMB-1_1_MH475146
-		blaCMY-150_2_NG_060513
-		blaPAU-1_1_MH053445
-		blaKPC-41_1_MK497255
-		blaKPC-36_1_MH593787
-		blaKPC-40_1_NG_064726:101-98
-		blaKPC-37_1_MH718730
-		blaKPC-38_1_MK098861
-		blaKPC-39_1_MK118771
-		blaKLUC-3_1_JX185316
-		blaKLUC-4_1_JX185317
-		blaKLUC-2_1_EF057432
-		mcr-10_1_MN179494
-		tet(X6)_1_MN507533
-		dfrA36_1_CP038791
+	blaVMB-1_1_MN719868
+	blaLMB-1_1_MH475146
+	blaCMY-150_2_NG_060513
+	blaPAU-1_1_MH053445
+	blaKPC-41_1_MK497255
+	blaKPC-36_1_MH593787
+	blaKPC-40_1_NG_064726:101-98
+	blaKPC-37_1_MH718730
+	blaKPC-38_1_MK098861
+	blaKPC-39_1_MK118771
+	blaKLUC-3_1_JX185316
+	blaKLUC-4_1_JX185317
+	blaKLUC-2_1_EF057432
+	mcr-10_1_MN179494
+	tet(X6)_1_MN507533
+	dfrA36_1_CP038791
 2020-02-13	Added:
-		dfrA34_1_JYRF01000065
+	dfrA34_1_JYRF01000065
 2020-02-11	Added:
-		tet(X5)_1_CP040912
+	tet(X5)_1_CP040912
 2020-02-10	Added:
-		blaLAP-1_1_EF026092
-		blaLAP-2_1_EU159120
+	blaLAP-1_1_EF026092
+	blaLAP-2_1_EU159120
 2020-02-10	Added:
-		qnrS10_1_JN836269
-		qnrS11_1_JQ269335
-		qnrS12_1_MKQI01000097
-		qnrS13_1_LUYD01000008
+	qnrS10_1_JN836269
+	qnrS11_1_JQ269335
+	qnrS12_1_MKQI01000097
+	qnrS13_1_LUYD01000008
 2019-10-01	Added:
-		tet(X3)_1_MK134375
-		tet(X4)_1_MK134376
+	tet(X3)_1_MK134375
+	tet(X4)_1_MK134376
 2019-04-26	Added:
-		mcr-9_1_NZ_NAAN01000063.1
+	mcr-9_1_NZ_NAAN01000063.1
 2019-02-20	Added:
-		fusC_1_KF527883
-		Modified:
-		fusB_1_AM292600 -> fusB_1_AY373761
-		fusB_3_JF777505 -> fusB_2_JF777505
+	fusC_1_KF527883
+	Modified:
+	fusB_1_AM292600 -> fusB_1_AY373761
+	fusB_3_JF777505 -> fusB_2_JF777505
 2019-01-22	Deleted:
-		blaCARB-4_1_U14749
-		Modified:
-		blaCARB-2_1_M69058
-		blaCARB-3_1_S46063
-		Added:
-		blaCARB-14_1_JQ364968
-		blaCARB-16_1_HF953351
-		blaCARB-17_1_KJ934265
-		blaCARB-18_1_KJ934266
-		blaCARB-19_1_KJ934267
-		blaCARB-20_1_NG_054946
-		blaCARB-21_1_NG_048724
-		blaCARB-22_1_JYNG01000059
-		blaCARB-23_1_NG_048726
-		blaCARB-24_1_BK008907
-		blaCARB-25_1_BK008888
-		blaCARB-26_1_BK008904
-		blaCARB-27_1_NG_048730
-		blaCARB-28_1_BK008906
-		blaCARB-29_1_BK008905
-		blaCARB-30_1_NG_048734
-		blaCARB-31_1_NG_048735
-		blaCARB-32_1_NG_048736
-		blaCARB-33_1_BK008903
-		blaCARB-34_1_NG_048738
-		blaCARB-35_1_BK008900
-		blaCARB-36_1_LHBD01000022
-		blaCARB-38_1_BK008898
-		blaCARB-40_1_BK008889
-		blaCARB-41_1_BK008890
-		blaCARB-42_1_NG_048745
-		blaCARB-43_1_NG_048746
-		blaCARB-44_1_JTGS01000066
-		blaCARB-45_1_JTGR01000061
-		blaCARB-46_1_NG_048749
-		blaCARB-49_1_KX599396
-		blaCARB-50_1_NG_052478
-		blaFRI-1_1_KT192551
-		blaFRI-2_1_KX620467
-		blaFRI-3_1_KY524440
-		blaFRI-4_1_NG_055267
-		blaFRI-5_1_MH208723
+	blaCARB-4_1_U14749
+	Modified:
+	blaCARB-2_1_M69058
+	blaCARB-3_1_S46063
+	Added:
+	blaCARB-14_1_JQ364968
+	blaCARB-16_1_HF953351
+	blaCARB-17_1_KJ934265
+	blaCARB-18_1_KJ934266
+	blaCARB-19_1_KJ934267
+	blaCARB-20_1_NG_054946
+	blaCARB-21_1_NG_048724
+	blaCARB-22_1_JYNG01000059
+	blaCARB-23_1_NG_048726
+	blaCARB-24_1_BK008907
+	blaCARB-25_1_BK008888
+	blaCARB-26_1_BK008904
+	blaCARB-27_1_NG_048730
+	blaCARB-28_1_BK008906
+	blaCARB-29_1_BK008905
+	blaCARB-30_1_NG_048734
+	blaCARB-31_1_NG_048735
+	blaCARB-32_1_NG_048736
+	blaCARB-33_1_BK008903
+	blaCARB-34_1_NG_048738
+	blaCARB-35_1_BK008900
+	blaCARB-36_1_LHBD01000022
+	blaCARB-38_1_BK008898
+	blaCARB-40_1_BK008889
+	blaCARB-41_1_BK008890
+	blaCARB-42_1_NG_048745
+	blaCARB-43_1_NG_048746
+	blaCARB-44_1_JTGS01000066
+	blaCARB-45_1_JTGR01000061
+	blaCARB-46_1_NG_048749
+	blaCARB-49_1_KX599396
+	blaCARB-50_1_NG_052478
+	blaFRI-1_1_KT192551
+	blaFRI-2_1_KX620467
+	blaFRI-3_1_KY524440
+	blaFRI-4_1_NG_055267
+	blaFRI-5_1_MH208723
 2018-12-14	Deleted:
-		aac(6')-aph(2'')_1_KF652095
-		aac(3)-IIa_1_CP023555
-		aadA2_1_X68227
-		aph(3')-VIj_1_KU922928
-		blaOXA-144_1_FJ617207
-		msr(A)_3_M81802
-		lmr(B)_1_X62867
-		Modified:
-		aadA8b_1_AM040708 -> aadA8b_2_AM040708
-		ant(3'')-Ih-aac(6')-IId_1_AF453998 -> ant(3'')-Ii-aac(6')-IId_1_AF453998
-		rmtf_1_JQ808129 -> rmtF_1_JQ808129
-		rmtG_1_KJ004567 -> rmtG_1_JX486113
-		spc_1_X02588 -> ant(9)-Ia_1_X02588
-		aac(3)-IIa_1_CP023555 -> aac(3)-IIIb_2_LLLC01000048
-		aac(3)-IIa_2_AY138987
-		blaCMY-8_1_AF167990 -> blaCMY-8_1_AB201268
-		blaCTX-M-35_1_AB176534 -> blaCTX-M-35_1_AB176532
-		blaOXA-48_2_AY236073 -> blaOXA-48_1_AY236073
-		blaOXA-144_2_FJ872530 -> blaOXA-144_1_FJ872530
-		blaOXA-234_1_NG050607 -> blaOXA-234_1_NG_050607
-		blaIMP-5_1_JF810083 -> blaIMP-5_1_AF290912
-		blaIMP-12_3_AJ420864 -> blaIMP-12_1_AJ420864
-		blaOXA-252_1_NG050608 -> blaOXA-252_1_NG_050608
-		blaCTX-M-27_1_AY156923
-		msr(E)_4_EU294228 -> msr(E)_1_FR751518
-		lnu(B)_1_JQ861959 -> lnu(B)_2_JQ861959
-		erm(B)_25_X72021 -> erm(B)_23_X72021
-		catB4_1_AF322577 -> catB3_2_U13880
-		qnrB32_2_JN173054 -> qnrB32_1_JN173054
-		tet(O)_4_AIOQ01000025 -> tet(O/32/O)_4_AIOQ01000025
-		tet(S)_4_AY534326 -> tet(S/M)_2_AY534326
-		tet(O/32/O)_7_FP929050 -> tet(O/32/O)_5_FP929050
-		tet(W/32/O)_5_AM710605 -> tet(W/32/O)_4_AM710605
-		Added:
-		aac(3)-IIa_3_X13543
-		aac(3)-IIa_4_L22613
-		aac(3)-IIa_5_FJ012882
-		aac(3)-IV_1_DQ241380
-		aac(3)-VIa_2_NC_009838
-		aph(3')-Ib_2_AJ744860
-		ant(9)-Ia_2_M69221
-		aadA24_1_DQ677333
-		aadA8b_1_AY139603
-		aadA2b_1_D43625
-		aac(6')-Ii_1_L12710
-		aac(3)-XI_1_CTEG01000046
-		aac(3)-VIII_1_AB211959
-		aac(3)-VIII_2_AJ843080
-		aac(3)-VIII_3_AJ748131
-		kmr_1_ENA_ACB88605
-		aadD_2_M19465
-		blaOXA-20_2_AF024602
-		blaOXA-60d_1_AY664506
-		blaOXA-60c_1_AY664505
-		blaOXA-60b_1_AY664504
-		blaOXA-60a_1_AY662675
-		erm(U)_1_NG_047843
-		lsa(E)_1_JX560992
-		mph(K)_1_NC_000964
+	aac(6')-aph(2'')_1_KF652095
+	aac(3)-IIa_1_CP023555
+	aadA2_1_X68227
+	aph(3')-VIj_1_KU922928
+	blaOXA-144_1_FJ617207
+	msr(A)_3_M81802
+	lmr(B)_1_X62867
+	Modified:
+	aadA8b_1_AM040708 -> aadA8b_2_AM040708
+	ant(3'')-Ih-aac(6')-IId_1_AF453998 -> ant(3'')-Ii-aac(6')-IId_1_AF453998
+	rmtf_1_JQ808129 -> rmtF_1_JQ808129
+	rmtG_1_KJ004567 -> rmtG_1_JX486113
+	spc_1_X02588 -> ant(9)-Ia_1_X02588
+	aac(3)-IIa_1_CP023555 -> aac(3)-IIIb_2_LLLC01000048
+	aac(3)-IIa_2_AY138987
+	blaCMY-8_1_AF167990 -> blaCMY-8_1_AB201268
+	blaCTX-M-35_1_AB176534 -> blaCTX-M-35_1_AB176532
+	blaOXA-48_2_AY236073 -> blaOXA-48_1_AY236073
+	blaOXA-144_2_FJ872530 -> blaOXA-144_1_FJ872530
+	blaOXA-234_1_NG050607 -> blaOXA-234_1_NG_050607
+	blaIMP-5_1_JF810083 -> blaIMP-5_1_AF290912
+	blaIMP-12_3_AJ420864 -> blaIMP-12_1_AJ420864
+	blaOXA-252_1_NG050608 -> blaOXA-252_1_NG_050608
+	blaCTX-M-27_1_AY156923
+	msr(E)_4_EU294228 -> msr(E)_1_FR751518
+	lnu(B)_1_JQ861959 -> lnu(B)_2_JQ861959
+	erm(B)_25_X72021 -> erm(B)_23_X72021
+	catB4_1_AF322577 -> catB3_2_U13880
+	qnrB32_2_JN173054 -> qnrB32_1_JN173054
+	tet(O)_4_AIOQ01000025 -> tet(O/32/O)_4_AIOQ01000025
+	tet(S)_4_AY534326 -> tet(S/M)_2_AY534326
+	tet(O/32/O)_7_FP929050 -> tet(O/32/O)_5_FP929050
+	tet(W/32/O)_5_AM710605 -> tet(W/32/O)_4_AM710605
+	Added:
+	aac(3)-IIa_3_X13543
+	aac(3)-IIa_4_L22613
+	aac(3)-IIa_5_FJ012882
+	aac(3)-IV_1_DQ241380
+	aac(3)-VIa_2_NC_009838
+	aph(3')-Ib_2_AJ744860
+	ant(9)-Ia_2_M69221
+	aadA24_1_DQ677333
+	aadA8b_1_AY139603
+	aadA2b_1_D43625
+	aac(6')-Ii_1_L12710
+	aac(3)-XI_1_CTEG01000046
+	aac(3)-VIII_1_AB211959
+	aac(3)-VIII_2_AJ843080
+	aac(3)-VIII_3_AJ748131
+	kmr_1_ENA_ACB88605
+	aadD_2_M19465
+	blaOXA-20_2_AF024602
+	blaOXA-60d_1_AY664506
+	blaOXA-60c_1_AY664505
+	blaOXA-60b_1_AY664504
+	blaOXA-60a_1_AY662675
+	erm(U)_1_NG_047843
+	lsa(E)_1_JX560992
+	mph(K)_1_NC_000964
 2018-09-10	Modified:
-		mcr-1_1_KP347127 -> mcr-1.1_1_KP347127
-		mcr-2_1_LT598652 -> mcr-2.1_1_LT598652
-		mcr-2.2_1_NG055496 -> mcr-2.2_1_MF176239
-		mcr-3.2_1_NG055523 -> mcr-3.2_1_NMWW01000143
-		mcr-3.3_1_NG055783 -> mcr-3.3_1_MF495680
-		mcr-3.4_1_NG055492 -> mcr-3.4_1_FLXA01000011
-		mcr-3.5_1_MF463699 -> mcr-3.5_1_MF489760
-		mcr-3.8_1_MF598079 -> mcr-3.8_1_MF598078
-		mcr-3.10_1_MG214533 -> mcr-3.10_1_MG214531
-		mcr-4.2_1_MG459157 -> mcr-4.2_1_MG822663
-		mcr-4.2_2_MG026621 -> mcr-4.3_1_MG026621
-		mcr-4.3_1_ERS1801979 -> mcr-4.6_1_MH423812
-		mcr-5_1_KY807921 -> mcr-5.1_1_KY807921
+	mcr-1_1_KP347127 -> mcr-1.1_1_KP347127
+	mcr-2_1_LT598652 -> mcr-2.1_1_LT598652
+	mcr-2.2_1_NG055496 -> mcr-2.2_1_MF176239
+	mcr-3.2_1_NG055523 -> mcr-3.2_1_NMWW01000143
+	mcr-3.3_1_NG055783 -> mcr-3.3_1_MF495680
+	mcr-3.4_1_NG055492 -> mcr-3.4_1_FLXA01000011
+	mcr-3.5_1_MF463699 -> mcr-3.5_1_MF489760
+	mcr-3.8_1_MF598079 -> mcr-3.8_1_MF598078
+	mcr-3.10_1_MG214533 -> mcr-3.10_1_MG214531
+	mcr-4.2_1_MG459157 -> mcr-4.2_1_MG822663
+	mcr-4.2_2_MG026621 -> mcr-4.3_1_MG026621
+	mcr-4.3_1_ERS1801979 -> mcr-4.6_1_MH423812
+	mcr-5_1_KY807921 -> mcr-5.1_1_KY807921
 2018-08-23	Deleted:
-		strA_1_M96392
+	strA_1_M96392
 2018-08-08	Modified:
-		blaIMP-64_1_KX949735
-		Added:
-		blaSHV-1b-b_1_DQ166783
+	blaIMP-64_1_KX949735
+	Added:
+	blaSHV-1b-b_1_DQ166783
 2018-07-31	Update and correct beta-lactam resistance db for genes:
-		NDM
-		VIM
-		KPC
-		IMP
-		TEM
-		SHV
-		CTX-M
-		CMY
-		ACC
-		DHA
+	NDM
+	VIM
+	KPC
+	IMP
+	TEM
+	SHV
+	CTX-M
+	CMY
+	ACC
+	DHA
 2018-07-23	Added:
-		bla-OXA-368_1_KT736121
-		blaOXA-336_1_KF048907
-		blaOXA-337_1_KF048908
-		blaOXA-338_1_KF048909
-		blaOXA-339_1_KF048911
-		blaOXA-340_1_KF048912
-		blaOXA-341_1_KF048913
-		blaOXA-342_1_KF048915
-		blaOXA-343_1_KF048916
-		blaOXA-344_1_KF048917
-		blaOXA-345_1_KF048918
-		blaOXA-346_1_KF048919
-		blaOXA-347_1_ACWG01000053
-		blaOXA-361_1_KF460531
-		blaOXA-362_1_KF460532
-		blaOXA-363_1_KF460533
-		blaOXA-364_1_JX306689
-		blaOXA-365_1_KF885217
-		blaOXA-366_1_KP050485
-		blaOXA-370_1_KJ488943
-		blaOXA-373_1_HG931732
-		blaOXA-374_1_KF986255
-		blaOXA-375_1_KF986256
-		blaOXA-376_1_KF986257
-		blaOXA-377_1_KF986258
-		blaOXA-378_1_KF986259
-		blaOXA-379_1_KF986260
-		blaOXA-380_1_KF986261
-		blaOXA-381_1_KJ135344
-		blaOXA-382_1_KJ135345
-		blaOXA-383_1_KF986262
-		blaOXA-384_1_KF986263
-		blaOXA-385_1_KF986253
-		blaOXA-386_1_KF986254
-		blaOXA-387_1_KJ173478
-		blaOXA-388_1_KJ135343
-		blaOXA-389_1_KJ135346
-		blaOXA-390_1_KJ135342
-		blaOXA-391_1_KJ427797
-		blaOXA-392_1_AB901044
-		blaOXA-395_1_AY306133
-		blaOXA-396_1_AY306134
-		blaOXA-397_1_KM087865
-		blaOXA-398_1_KM087842
-		blaOXA-400_1_KJ780078
-		blaOXA-401_1_KJ780076
-		blaOXA-402_1_JX865391
-		blaOXA-403_1_KJ920337
-		blaOXA-404_1_KJ920338
-		blaOXA-405_1_KM589641
-		blaOXA-406_1_KJ584915
-		blaOXA-407_1_KJ584916
-		blaOXA-408_1_KJ584917
-		blaOXA-409_1_KJ584918
-		blaOXA-410_1_KJ584919
-		blaOXA-411_1_KJ584920
-		blaOXA-412_1_KJ584921
-		blaOXA-413_1_KJ584922
-		blaOXA-414_1_KJ584914
-		blaOXA-415_1_KJ865754
-		blaOXA-416_1_KP264119
-		blaOXA-417_1_KM220587
-		blaOXA-418_1_KJ997966
-		blaOXA-420_1_AB983359
-		blaOXA-421_1_KM401566
-		blaOXA-422_1_KM433671
-		blaOXA-423_1_KM433672
-		blaOXA-424_1_KM588352
-		blaOXA-425_1_KM588353
-		blaOXA-426_1_KM588354
-		blaOXA-429_1_KM979376
-		blaOXA-430_1_KM979377
-		blaOXA-431_1_KM979378
-		blaOXA-432_1_KM979379
-		blaOXA-433_1_KM979380
-		blaOXA-435_1_KP144324
-		blaOXA-436_1_KT959105
-		blaOXA-437_1_KP410856
-		blaOXA-438_1_KP410734
-		blaOXA-439_1_KP727573
-		blaOXA-440_1_KP727574
-		blaOXA-441_1_JX865394
-		blaOXA-442_1_KP844571
-		blaOXA-443_1_LC030178
-		blaOXA-444_1_CP010800
-		blaOXA-450_1_KR061502
-		blaOXA-451_1_KR061504
-		blaOXA-452_1_KR061505
-		blaOXA-453_1_KR061507
-		blaOXA-454_1_LC037981
-		blaOXA-455_1_KP903885
-		blaOXA-457_1_KP903887
-		blaOXA-458_1_KP903888
-		blaOXA-459_1_KP903889
-		blaOXA-460_1_KR061508
-		blaOXA-461_1_KR061509
-		blaOXA-464_1_KU721146
-		blaOXA-470_1_KR182163
-		blaOXA-471_1_EU086833
-		blaOXA-472_1_KR182165
-		blaOXA-473_1_KR182166
-		blaOXA-474_1_KR182167
-		blaOXA-475_1_KR182168
-		blaOXA-476_1_KR182169
-		blaOXA-477_1_KR182170
-		blaOXA-478_1_KR182171
-		blaOXA-479_1_KR182172
-		blaOXA-480_1_KR872296
-		blaOXA-482_1_KP264124
-		blaOXA-483_1_KP264125
-		blaOXA-484_1_KR401105
-		blaOXA-485_1_LLNM01000004
-		blaOXA-486_1_AY597426
-		blaOXA-488_1_CP017969
-		blaOXA-489_1_CP013733
-		blaOXA-490_1_KU721147
-		blaOXA-491_1_KU721148
-		blaOXA-493_1_KU739135
-		blaOXA-494_1_AY597430
-		blaOXA-496_1_KT200608
-		blaOXA-497_1_LKJZ01000136
-		blaOXA-499_1_KT964029
-		blaOXA-500_1_JMNQ01000002
-		blaOXA-501_1_KU167110
-		blaOXA-502_1_KU167111
-		blaOXA-503_1_KU16710
-		blaOXA-505_1_KU531433
-		blaOXA-506_1_KU571454
-		blaOXA-507_1_KU551305
-		blaOXA-508_1_KU596972
-		blaOXA-509_1_KU692025
-		blaOXA-510_1_JX865393
-		blaOXA-511_1_KU710720
-		blaOXA-512_1_KU726870
-		blaOXA-513_1_KU323972
-		blaOXA-514_1_KU866382
-		blaOXA-515_1_KU866383
-		blaOXA-516_1_KU871391
-		blaOXA-517_1_KU878974
-		blaOXA-519_1_KX349732
-		blaOXA-520_1_KX388630
-		blaOXA-521_1_KX462701
-		blaOXA-522_1_KX599408
-		blaOXA-523_1_KX599401
-		blaOXA-524_1_KX599402
-		blaOXA-525_1_KX599406
-		blaOXA-526_1_KX599409
-		blaOXA-527_1_KX599404
-		blaOXA-528_1_KX599407
-		blaOXA-529_1_KX599405
-		blaOXA-530_1_KX599398
-		blaOXA-531_1_KX599400
-		blaOXA-532_1_KX609247
-		blaOXA-533_1_KX668472
-		blaOXA-534_1_KX714285
-		blaOXA535_1_KX828709
-		blaOXA-536_1_KX859240
-		blaOXA-537_1_KX360747
-		blaOXA-538_1_KX827284
-		blaOXA-539_1_KY094077
-		blaOXA-540_1_KJ138219
-		blaOXA-541_1_FM179467
-		blaOXA-290_1_APOK01000044
-		blaOXA-293_1_NG_050610
-		blaOXA-10_1_J03427
-		blaOXA-14_1_KJ420612
-		blaOXA-50_1_AY306130
-		blaOXA-51_1_DQ385606
-		blaOXA-85_1_JANA01000064
-		blaOXA-121_1_EU255290
-		blaOXA-122_1_EU255291
-		blaOXA-123_1_EU255292
-		blaOXA-124_1_EU255293
-		blaOXA-125_1_EU255294
-		blaOXA-126_1_EU255295
-		blaOXA-226_1_FJ617207
-		blaOXA-233_1_KJ657570
-		blaOXA-234_1_NG050607
-		blaZ_3_CP000732
-		blaZ_4_X04121
-		blaZ_6_AP003139
-		blaZ_7_AP004832
-		blaZ_8_HE993884
-		blaZ_9_DQ269019
-		blaZ_10_FR823292
-		blaZ_12_M15195
-		blaOXA-545_1_KY674541
-		blaOXA-546_1_KY682756
-		blaOXA-547_1_KY684124
-		blaOXA-548_1_KY682750
-		blaOXA-549_1_KY682751
-		blaOXA-550_1_KY682752
-		blaOXA-551_1_KY682753
-		blaOXA-552_1_KY682754
-		blaOXA-553_1_KY682755
-		blaOXA-554_1_KY126221
-		blaOXA-555_1_KY126224
-		blaOXA-556_1_KY126231
-		blaOXA-557_1_KY126232
-		blaOXA-558_1_KY126234
-		blaOXA-559_1_KY126237
-		blaOXA-560_1_KY126238
-		blaOXA-561_1_KY126240
-		blaOXA-562_1_KY126241
-		blaOXA-563_1_KY767021
-		blaOXA-564_1_KY767022
-		blaOXA-565_1_KY883665
-		blaOXA-566_1_MF099636
-		blaOXA-312_1_KF057029
-		blaOXA-313_1_KF057030
-		blaOXA-314_1_KF057031
-		blaOXA-315_1_KF057032
-		blaOXA-316_1_KF057033
-		blaOXA-317_1_KF057034
-		blaOXA-300_1_APPK01000054
-		blaOXA-301_1_APQG01000050
-		blaOXA-304_1_APSC01000007
-		blaOXA-305_1_APPF01000021
-		blaOXA-280_1_APPZ01000001
-		blaOXA-281_1_APON01000041
-		blaOXA-282_1_APQS01000019
-		blaOXA-283_1_AYHO01000005
-		blaOXA-284_1_APRU01000004
-		blaOXA-285_1_APRY01000059
-		blaOXA-276_1_APPI01000013
-		blaOXA-277_1_APPQ01000011
-		blaOXA-267_1_APQH01000006
-		blaOXA-268_1_APOE01000008
-		blaOXA-269_1_APQJ01000007
-		blaOXA-270_1_APQM01000006
-		blaOXA-271_1_APQO01000006
-		blaOXA-272_1_LSAL01000001
-		blaOXA-273_1_APQN01000012
-		blaOXA-246_1_EU886980
-		blaOXA-252_1_NG050608
-		blaOXA-259_1_KF057028
-		blaOXA-260_1_APOR01000009
-		blaOXA-261_1_APQV01000009
-		blaOXA-262_1_APRA01000005
-		blaOXA-263_1_APQY01000006
-		blaOXA-264_1_APQQ01000012
-		blaOXA-265_1_APQR01000003
-		blaOXA-193_1_CP013032
-		blaOXA-102_1_NZ_LWGP01000001
-		blaOXA-103_1_APQF01000011
-		blaZ_13_KF471116
-		blaZ_14_JBAG01000015
-		blaZ_15_JAZQ01000018
-		blaZ_16_JBTH01000015
-		blaZ_17_JDDF01000008
-		blaZ_18_JBQW01000016
-		blaZ_19_JBMK01000007
-		blaZ_20_JBVX01000014
-		blaZ_21_JGQH01000014
-		blaZ_22_JCHI01000035
-		blaZ_23_JBND01000015
-		blaZ_24_JBLQ01000018
-		blaZ_25_JBKK01000017
-		blaZ_26_JBJP01000007
-		blaZ_27_JDGZ01000043
-		blaZ_28_JDYO01000009
-		blaZ_29_JDXN01000019
-		blaZ_30_JGUQ01000012
-		blaZ_31_JIFU01000008
-		blaZ_32_JINH01000005
-		blaZ_33_JIXQ01000012
-		blaZ_34_JJAO01000008
-		blaZ_35_JIVZ01000012
-		blaZ_36_JITV01000006
-		blaZ_37_JIFD01000012
-		blaZ_38_NZ_JEMM01000040
-		blaZ_39_JHTU01000073
-		blaZ_40_NZ_AZBT01000050
-		blaZ_42_CCEE01000006
-		blaZ_43_NZ_CAVU010000015
-		blaZ_44_NZ_JWJJ01000015
-		blaZ_45_CP010941
-		blaZ_46_CP010944
-		blaZ_47_NZ_JYGF01000020
-		blaZ_48_CFPA01000022
-		blaZ_49_CVLS01000543
-		blaZ_50_KR230047
-		blaZ_51_NZ_JVWO01000108
-		blaZ_52_NZ_JVWM01000127
-		blaZ_53_NZ_JUXQ01000001
-		blaZ_54_NZ_JVRB01000003
-		blaZ_55_NZ_JVLY01000044
-		blaZ_56_NZ_JUMU01000089
-		blaZ_57_NZ_JURP01000126
-		blaZ_58_NZ_JUUA01000057
-		blaZ_59_NZ_JVBT01000063
-		blaZ_60_NZ_JVML01000111
-		blaZ_61_NZ_JVAT01000021
-		blaZ_62_NZ_JVOH01000023
-		blaZ_63_NZ_JUMX01000103
-		blaZ_64_CSJB01000017
-		blaZ_65_CSEV01000005
-		blaZ_66_CSGM01000014
-		blaZ_67_NZ_CTTL01000039
-		blaZ_68_NZ_CUHK01000055
-		blaZ_69_NZ_CUHB01000033
-		blaZ_70_NZ_CUEK01000047
-		blaZ_71_NZ_CUGR01000082
-		blaZ_72_NZ_CUHG01000035
-		blaZ_73_CYNA01000004
-		blaZ_74_CZWI01000159
-		blaZ_75_LNTF01000008
-		blaZ_76_FFOR01000002
-		blaZ_77_FGNH01000009
-		blaZ_78_KU607301
-		blaZ_79_KU607584
-		blaZ_80_KU607855
-		blaZ_81_FGJZ01000020
-		blaZ_82_FGSJ01000003
-		blaZ_83_FGWO01000019
-		blaZ_84_FHDH01000010
-		blaZ_85_NZ_FHDT01000016
-		blaZ_87_NZ_LRNC01000042
-		blaZ_88_FKTX01000011
-		blaZ_89_FKPS01000007
-		blaZ_90_FKVU01000010
-		blaZ_91_FKQH01000022
-		blaZ_92_FKWG01000001
-		blaZ_93_FKQA01000038
-		blaZ_94_LYRW01000005
-		blaZ_95_MAJJ01000071
-		blaZ_96_LNDI01000019
-		blaZ_97_FMOK01000003
-		blaZ_98_LTEF01000041
-		blaZ_99_LTNH01000008
-		blaZ_100_LTMH01000008
-		blaZ_101_LTLP01000099
-		blaZ_102_MLQA01000023
-		blaZ_103_FQSJ01000009
-		blaZ_104_FQHI01000006
-		blaZ_105_FQJS01000007
-		blaZ_106_FQHX01000011
-		blaZ_107_FQDM01000011
-		blaZ_108_FQPO01000005
-		blaZ_41_AENR01000015
-		blaZ_86_AIZE01000023
-		blaZ_109_AOAS01000022
-		blaZ_110_AJCZ01000013
-		blaZ_111_AJCN01000010
-		blaZ_112_AKGL01000044
-		blaZ_113_AHVS01000008
-		blaZ_114_NC_013379
-		blaZ_115_FN433596
-		blaZ_116_NC_013348
-		blaZ_117_ACHE01000004
-		blaZ_118_NC_004461
-		blaZ_119_NZ_CANQ01000029
-		blaZ_120_NZ_ALWG01000005
-		blaZ_121_AIWM01000014
-		blaZ_122_NZ_AJGE01000057
-		blaZ_123_NC_013653
-		blaZ_124_NC_013944
-		blaZ_125_CP003194
-		blaZ_126_NC_013374
-		blaZ_127_ACFR01000018
-		blaZ_128_GQ900471
-		blaZ_129_CP003194
-		blaZ_130_AHKZ01000073
-		blaZ_131_GQ900485
-		blaZ_132_AHVO01000010
-		blaZ_133_AIDT01000014
-		blaZ_134_NZ_AJGE01000047
-		blaZ_135_AB811795
-		blaZ_136_NZ_ALWE01000009
-		blaZ_81_FGJZ01000020
-		blaZ_138_CP003979
-		Modified:
-		blaOXA-307_1_NG050611  -> blaOXA-307_1_NG_050611
-		blaOXA-287_1_NG050609  -> blaOXA-287_1_NG_050609
-		blaOXA-293_1_NG050610 -> blaOXA-289_1_APRM01000005
-		blaOXA-466_1_KR061501
-		blaOXA-308_1_NG049603 -> blaOXA-308_1_APPN01000080
-		blaOXA-306_1_NG049602 -> blaOXA-306_1_APSB01000022
-		blaOXA-303_1_NG049599 -> blaOXA-303_1_APSD01000035
-		blaOXA-302_1_NG049598 -> blaOXA-302_1_APRT01000004
-		blaOXA-299_1_NG049594 -> blaOXA-299_1_APQD01000016
-		blaOXA-298_1_NG049593 -> blaOXA-298_1_APSA01000003
-		blaOXA-1_1_J02967 -> blaOXA-1_1_HQ170510
-		blaOXA-2_1_GQ466184 -> blaOXA-2_2_GQ466184
-		blaOXA-2_2_AY444814 -> blaOXA-2_1_DQ112222
-		blaOXA-5_1_X58272 -> blaOXA-306_1_NG049602
-		blaOXA-10_2_EU886981 -> blaOXA-9_1_KQ089875
-		blaOXA-17_2_DQ902344 -> blaOXA-17_1_DQ902344
-		blaOXA-18_1_EU503121 -> blaOXA-18_1_U85514
-		blaOXA-20_1_AF024602 -> blaOXA-20_1_AY307114
-		blaOXA-21_2_DQ993182 -> blaOXA-21_1_AB626885
-		blaOXA-23_1_HQ700358 -> blaOXA-23_1_AY795964
-		blaOXA-28_1_FJ374756 -> blaOXA-28_1_AF231133
-		blaOXA-46_1_AJ969237 -> blaOXA-46_1_AF317511
-		blaOXA-56_1_AY660529 -> blaOXA-56_1_AY445080
-		blaOXA-60_1_AY664506 -> blaOXA-60_1_AF525303
-		blaOXA-66_4_FJ360530 -> blaOXA-66_1_AY750909
-		blaOXA-69_1_HM564339 -> blaOXA-69_1_AY859527
-		blaOXA-71_1_AY859528 -> blaOXA-71_1_AY750913
-		blaOXA-72_1_GU199039 -> blaOXA-72_1_AY739646
-		blaOXA-82_2_EU019536 -> blaOXA-82_1_DQ987479
-		blaOXA-69_1_HM564339 -> blaOXA-89_1_DQ445683
-		blaOXA-98_1_AM279652 -> blaOXA-98_1_EU255288
-		blaOXA-107_1_EF650033 -> blaOXA-107_1_LAVJ01000082
-		blaOXA-114_1_HM368376 -> blaOXA-114g_1_HM368376
-		blaOXA-114_2_HM368375 -> blaOXA-114f_1_HM368375
-		blaOXA-114_3_HM104634 -> blaOXA-114e_1_HM104634
-		blaOXA-114_4_HM104633 -> blaOXA-114d_1_HM104633
-		blaOXA-114_5_HM056041 -> blaOXA-114c_1_HM056041
-		blaOXA-114_6_HM056040 -> blaOXA-114a_1_EU188842
-		blaOXA-119_1_AY139598 -> blaOXA-119_1_DQ767903
-		blaOXA-120_1_HE963768 -> blaOXA-120_1_EU255289
-		blaOXA-127_1_EU255296
-		blaOXA-129_1_AM932669 -> blaOXA-129_1_FJWZ01000025
-		blaOXA-136_1_EU086833 -> blaOXA-136_1_EU086831
-		blaOXA-137_1_EU086836 -> blaOXA-137_1_EU086834
-		blaOXA-142_1_EU358785 -> blaOXA-142_1_LC169567
-		blaOXA-146_1_FJ194460 -> blaOXA-146_1_FJ194494
-		blaOXA-181_1_HM992946 -> blaOXA-181_1_CM004561
-		blaOXA-204_1_JQ809466 -> blaOXA-204_1_KP027885
-		blaOXA-207_1_JQ838185 -> blaOXA-207_1_LLFS01000355
-		blaOXA-208_1_FR853176 -> blaOXA-208_1_KF305665
-		blaOXA-224_1_JN596991 -> blaOXA-224_1_JN412067
-		blaOXA-243_1_JX206446 -> blaOXA-243_1_AFRQ01000031
-		blaOXA-244_1_JX438000 -> blaOXA-244_1_KP659189
-		blaZ_32_AP004832 -> blaZ_1_CP000704
-		blaZ_34_AP003139 -> blaZ_2_CP000731
-		blaZ_35_AJ302698 -> blaZ_5_AJ302698
-		blaZ_36_AJ400722 -> blaZ_11_AJ400722
-		blaOXA-297_1_NG049592 -> blaOXA-297_1_APRR01000006
-		blaOXA-296_1_NG049591 -> blaOXA-296_1_APOH01000009
-		blaOXA-295_1_NG049590 -> blaOXA-295_1_APRW01000016
-		blaOXA-294_1_NG049589 -> blaOXA-294_1_APPC01000015
-		blaOXA-292_1_NG049588 -> blaOXA-292_1_APRO01000007
-		blaOXA-291_1_NG049587 -> blaOXA-291_1_APRL01000010
-		blaOXA-288_1_NG049585 -> blaOXA-288_1_APRN01000033
-		blaOXA-286_1_NG049584 -> blaOXA-286_1_APOI01000030
-		blaOXA-279_1_NG049576 -> blaOXA-279_1_APOM01000058
-		blaOXA-275_1_NG049572 -> blaOXA-275_1_APPJ01000001
-		blaOXA-274_1_NG049571 -> blaOXA-274_1_APOS01000038
-		blaOXA-266_1_NG049562 -> blaOXA-266_1_APPO01000008
-		blaOXA-151_1_KP771979 -> blaOXA-151_1_CP009553
-		Deleted:
-		blaOXA-504_1_KT355710
-		blaOXA-491_1_JAIV01000087
-		blaOXA-464_1_JAIX01000028
-		blaOXA-2_1_DQ310703
-		blaOXA-9_2_JF703130
-		blaOXA-10_1_HM175875
-		blaOXA-12_1_U10251
-		blaOXA-14_1_L38523
-		blaOXA-50_1_AY306135
-		blaOXA-50_2_AY306133
-		blaOXA-50_3_AY306132
-		blaOXA-50_3_AY306130
-		blaOXA-51_1_AJ309734
-		blaOXA-51_3_EU255296
-		blaOXA-51_4_EU255295
-		blaOXA-51_5_EU255294
-		blaOXA-51_6_EU255293
-		blaOXA-51_7_EU255292
-		blaOXA-51_8_EU255291
-		blaOXA-51_9_EU255290 
-		blaOXA-51_11_EU255288
-		blaOXA-58_14_EU107364
-		blaOXA-60_1_AY664506
-		blaOXA-60_2_AY664505
-		blaOXA-60_3_AY664504
-		blaOXA-60_4_AY662675
-		blaOXA-82_1_GQ352402
-		blaOXA-85_1_AY227054
-		blaOXA-117_2_EU220745
-		blaOXA-136_2_EU086832
-		blaOXA-436_1_KT959103
+	bla-OXA-368_1_KT736121
+	blaOXA-336_1_KF048907
+	blaOXA-337_1_KF048908
+	blaOXA-338_1_KF048909
+	blaOXA-339_1_KF048911
+	blaOXA-340_1_KF048912
+	blaOXA-341_1_KF048913
+	blaOXA-342_1_KF048915
+	blaOXA-343_1_KF048916
+	blaOXA-344_1_KF048917
+	blaOXA-345_1_KF048918
+	blaOXA-346_1_KF048919
+	blaOXA-347_1_ACWG01000053
+	blaOXA-361_1_KF460531
+	blaOXA-362_1_KF460532
+	blaOXA-363_1_KF460533
+	blaOXA-364_1_JX306689
+	blaOXA-365_1_KF885217
+	blaOXA-366_1_KP050485
+	blaOXA-370_1_KJ488943
+	blaOXA-373_1_HG931732
+	blaOXA-374_1_KF986255
+	blaOXA-375_1_KF986256
+	blaOXA-376_1_KF986257
+	blaOXA-377_1_KF986258
+	blaOXA-378_1_KF986259
+	blaOXA-379_1_KF986260
+	blaOXA-380_1_KF986261
+	blaOXA-381_1_KJ135344
+	blaOXA-382_1_KJ135345
+	blaOXA-383_1_KF986262
+	blaOXA-384_1_KF986263
+	blaOXA-385_1_KF986253
+	blaOXA-386_1_KF986254
+	blaOXA-387_1_KJ173478
+	blaOXA-388_1_KJ135343
+	blaOXA-389_1_KJ135346
+	blaOXA-390_1_KJ135342
+	blaOXA-391_1_KJ427797
+	blaOXA-392_1_AB901044
+	blaOXA-395_1_AY306133
+	blaOXA-396_1_AY306134
+	blaOXA-397_1_KM087865
+	blaOXA-398_1_KM087842
+	blaOXA-400_1_KJ780078
+	blaOXA-401_1_KJ780076
+	blaOXA-402_1_JX865391
+	blaOXA-403_1_KJ920337
+	blaOXA-404_1_KJ920338
+	blaOXA-405_1_KM589641
+	blaOXA-406_1_KJ584915
+	blaOXA-407_1_KJ584916
+	blaOXA-408_1_KJ584917
+	blaOXA-409_1_KJ584918
+	blaOXA-410_1_KJ584919
+	blaOXA-411_1_KJ584920
+	blaOXA-412_1_KJ584921
+	blaOXA-413_1_KJ584922
+	blaOXA-414_1_KJ584914
+	blaOXA-415_1_KJ865754
+	blaOXA-416_1_KP264119
+	blaOXA-417_1_KM220587
+	blaOXA-418_1_KJ997966
+	blaOXA-420_1_AB983359
+	blaOXA-421_1_KM401566
+	blaOXA-422_1_KM433671
+	blaOXA-423_1_KM433672
+	blaOXA-424_1_KM588352
+	blaOXA-425_1_KM588353
+	blaOXA-426_1_KM588354
+	blaOXA-429_1_KM979376
+	blaOXA-430_1_KM979377
+	blaOXA-431_1_KM979378
+	blaOXA-432_1_KM979379
+	blaOXA-433_1_KM979380
+	blaOXA-435_1_KP144324
+	blaOXA-436_1_KT959105
+	blaOXA-437_1_KP410856
+	blaOXA-438_1_KP410734
+	blaOXA-439_1_KP727573
+	blaOXA-440_1_KP727574
+	blaOXA-441_1_JX865394
+	blaOXA-442_1_KP844571
+	blaOXA-443_1_LC030178
+	blaOXA-444_1_CP010800
+	blaOXA-450_1_KR061502
+	blaOXA-451_1_KR061504
+	blaOXA-452_1_KR061505
+	blaOXA-453_1_KR061507
+	blaOXA-454_1_LC037981
+	blaOXA-455_1_KP903885
+	blaOXA-457_1_KP903887
+	blaOXA-458_1_KP903888
+	blaOXA-459_1_KP903889
+	blaOXA-460_1_KR061508
+	blaOXA-461_1_KR061509
+	blaOXA-464_1_KU721146
+	blaOXA-470_1_KR182163
+	blaOXA-471_1_EU086833
+	blaOXA-472_1_KR182165
+	blaOXA-473_1_KR182166
+	blaOXA-474_1_KR182167
+	blaOXA-475_1_KR182168
+	blaOXA-476_1_KR182169
+	blaOXA-477_1_KR182170
+	blaOXA-478_1_KR182171
+	blaOXA-479_1_KR182172
+	blaOXA-480_1_KR872296
+	blaOXA-482_1_KP264124
+	blaOXA-483_1_KP264125
+	blaOXA-484_1_KR401105
+	blaOXA-485_1_LLNM01000004
+	blaOXA-486_1_AY597426
+	blaOXA-488_1_CP017969
+	blaOXA-489_1_CP013733
+	blaOXA-490_1_KU721147
+	blaOXA-491_1_KU721148
+	blaOXA-493_1_KU739135
+	blaOXA-494_1_AY597430
+	blaOXA-496_1_KT200608
+	blaOXA-497_1_LKJZ01000136
+	blaOXA-499_1_KT964029
+	blaOXA-500_1_JMNQ01000002
+	blaOXA-501_1_KU167110
+	blaOXA-502_1_KU167111
+	blaOXA-503_1_KU16710
+	blaOXA-505_1_KU531433
+	blaOXA-506_1_KU571454
+	blaOXA-507_1_KU551305
+	blaOXA-508_1_KU596972
+	blaOXA-509_1_KU692025
+	blaOXA-510_1_JX865393
+	blaOXA-511_1_KU710720
+	blaOXA-512_1_KU726870
+	blaOXA-513_1_KU323972
+	blaOXA-514_1_KU866382
+	blaOXA-515_1_KU866383
+	blaOXA-516_1_KU871391
+	blaOXA-517_1_KU878974
+	blaOXA-519_1_KX349732
+	blaOXA-520_1_KX388630
+	blaOXA-521_1_KX462701
+	blaOXA-522_1_KX599408
+	blaOXA-523_1_KX599401
+	blaOXA-524_1_KX599402
+	blaOXA-525_1_KX599406
+	blaOXA-526_1_KX599409
+	blaOXA-527_1_KX599404
+	blaOXA-528_1_KX599407
+	blaOXA-529_1_KX599405
+	blaOXA-530_1_KX599398
+	blaOXA-531_1_KX599400
+	blaOXA-532_1_KX609247
+	blaOXA-533_1_KX668472
+	blaOXA-534_1_KX714285
+	blaOXA535_1_KX828709
+	blaOXA-536_1_KX859240
+	blaOXA-537_1_KX360747
+	blaOXA-538_1_KX827284
+	blaOXA-539_1_KY094077
+	blaOXA-540_1_KJ138219
+	blaOXA-541_1_FM179467
+	blaOXA-290_1_APOK01000044
+	blaOXA-293_1_NG_050610
+	blaOXA-10_1_J03427
+	blaOXA-14_1_KJ420612
+	blaOXA-50_1_AY306130
+	blaOXA-51_1_DQ385606
+	blaOXA-85_1_JANA01000064
+	blaOXA-121_1_EU255290
+	blaOXA-122_1_EU255291
+	blaOXA-123_1_EU255292
+	blaOXA-124_1_EU255293
+	blaOXA-125_1_EU255294
+	blaOXA-126_1_EU255295
+	blaOXA-226_1_FJ617207
+	blaOXA-233_1_KJ657570
+	blaOXA-234_1_NG050607
+	blaZ_3_CP000732
+	blaZ_4_X04121
+	blaZ_6_AP003139
+	blaZ_7_AP004832
+	blaZ_8_HE993884
+	blaZ_9_DQ269019
+	blaZ_10_FR823292
+	blaZ_12_M15195
+	blaOXA-545_1_KY674541
+	blaOXA-546_1_KY682756
+	blaOXA-547_1_KY684124
+	blaOXA-548_1_KY682750
+	blaOXA-549_1_KY682751
+	blaOXA-550_1_KY682752
+	blaOXA-551_1_KY682753
+	blaOXA-552_1_KY682754
+	blaOXA-553_1_KY682755
+	blaOXA-554_1_KY126221
+	blaOXA-555_1_KY126224
+	blaOXA-556_1_KY126231
+	blaOXA-557_1_KY126232
+	blaOXA-558_1_KY126234
+	blaOXA-559_1_KY126237
+	blaOXA-560_1_KY126238
+	blaOXA-561_1_KY126240
+	blaOXA-562_1_KY126241
+	blaOXA-563_1_KY767021
+	blaOXA-564_1_KY767022
+	blaOXA-565_1_KY883665
+	blaOXA-566_1_MF099636
+	blaOXA-312_1_KF057029
+	blaOXA-313_1_KF057030
+	blaOXA-314_1_KF057031
+	blaOXA-315_1_KF057032
+	blaOXA-316_1_KF057033
+	blaOXA-317_1_KF057034
+	blaOXA-300_1_APPK01000054
+	blaOXA-301_1_APQG01000050
+	blaOXA-304_1_APSC01000007
+	blaOXA-305_1_APPF01000021
+	blaOXA-280_1_APPZ01000001
+	blaOXA-281_1_APON01000041
+	blaOXA-282_1_APQS01000019
+	blaOXA-283_1_AYHO01000005
+	blaOXA-284_1_APRU01000004
+	blaOXA-285_1_APRY01000059
+	blaOXA-276_1_APPI01000013
+	blaOXA-277_1_APPQ01000011
+	blaOXA-267_1_APQH01000006
+	blaOXA-268_1_APOE01000008
+	blaOXA-269_1_APQJ01000007
+	blaOXA-270_1_APQM01000006
+	blaOXA-271_1_APQO01000006
+	blaOXA-272_1_LSAL01000001
+	blaOXA-273_1_APQN01000012
+	blaOXA-246_1_EU886980
+	blaOXA-252_1_NG050608
+	blaOXA-259_1_KF057028
+	blaOXA-260_1_APOR01000009
+	blaOXA-261_1_APQV01000009
+	blaOXA-262_1_APRA01000005
+	blaOXA-263_1_APQY01000006
+	blaOXA-264_1_APQQ01000012
+	blaOXA-265_1_APQR01000003
+	blaOXA-193_1_CP013032
+	blaOXA-102_1_NZ_LWGP01000001
+	blaOXA-103_1_APQF01000011
+	blaZ_13_KF471116
+	blaZ_14_JBAG01000015
+	blaZ_15_JAZQ01000018
+	blaZ_16_JBTH01000015
+	blaZ_17_JDDF01000008
+	blaZ_18_JBQW01000016
+	blaZ_19_JBMK01000007
+	blaZ_20_JBVX01000014
+	blaZ_21_JGQH01000014
+	blaZ_22_JCHI01000035
+	blaZ_23_JBND01000015
+	blaZ_24_JBLQ01000018
+	blaZ_25_JBKK01000017
+	blaZ_26_JBJP01000007
+	blaZ_27_JDGZ01000043
+	blaZ_28_JDYO01000009
+	blaZ_29_JDXN01000019
+	blaZ_30_JGUQ01000012
+	blaZ_31_JIFU01000008
+	blaZ_32_JINH01000005
+	blaZ_33_JIXQ01000012
+	blaZ_34_JJAO01000008
+	blaZ_35_JIVZ01000012
+	blaZ_36_JITV01000006
+	blaZ_37_JIFD01000012
+	blaZ_38_NZ_JEMM01000040
+	blaZ_39_JHTU01000073
+	blaZ_40_NZ_AZBT01000050
+	blaZ_42_CCEE01000006
+	blaZ_43_NZ_CAVU010000015
+	blaZ_44_NZ_JWJJ01000015
+	blaZ_45_CP010941
+	blaZ_46_CP010944
+	blaZ_47_NZ_JYGF01000020
+	blaZ_48_CFPA01000022
+	blaZ_49_CVLS01000543
+	blaZ_50_KR230047
+	blaZ_51_NZ_JVWO01000108
+	blaZ_52_NZ_JVWM01000127
+	blaZ_53_NZ_JUXQ01000001
+	blaZ_54_NZ_JVRB01000003
+	blaZ_55_NZ_JVLY01000044
+	blaZ_56_NZ_JUMU01000089
+	blaZ_57_NZ_JURP01000126
+	blaZ_58_NZ_JUUA01000057
+	blaZ_59_NZ_JVBT01000063
+	blaZ_60_NZ_JVML01000111
+	blaZ_61_NZ_JVAT01000021
+	blaZ_62_NZ_JVOH01000023
+	blaZ_63_NZ_JUMX01000103
+	blaZ_64_CSJB01000017
+	blaZ_65_CSEV01000005
+	blaZ_66_CSGM01000014
+	blaZ_67_NZ_CTTL01000039
+	blaZ_68_NZ_CUHK01000055
+	blaZ_69_NZ_CUHB01000033
+	blaZ_70_NZ_CUEK01000047
+	blaZ_71_NZ_CUGR01000082
+	blaZ_72_NZ_CUHG01000035
+	blaZ_73_CYNA01000004
+	blaZ_74_CZWI01000159
+	blaZ_75_LNTF01000008
+	blaZ_76_FFOR01000002
+	blaZ_77_FGNH01000009
+	blaZ_78_KU607301
+	blaZ_79_KU607584
+	blaZ_80_KU607855
+	blaZ_81_FGJZ01000020
+	blaZ_82_FGSJ01000003
+	blaZ_83_FGWO01000019
+	blaZ_84_FHDH01000010
+	blaZ_85_NZ_FHDT01000016
+	blaZ_87_NZ_LRNC01000042
+	blaZ_88_FKTX01000011
+	blaZ_89_FKPS01000007
+	blaZ_90_FKVU01000010
+	blaZ_91_FKQH01000022
+	blaZ_92_FKWG01000001
+	blaZ_93_FKQA01000038
+	blaZ_94_LYRW01000005
+	blaZ_95_MAJJ01000071
+	blaZ_96_LNDI01000019
+	blaZ_97_FMOK01000003
+	blaZ_98_LTEF01000041
+	blaZ_99_LTNH01000008
+	blaZ_100_LTMH01000008
+	blaZ_101_LTLP01000099
+	blaZ_102_MLQA01000023
+	blaZ_103_FQSJ01000009
+	blaZ_104_FQHI01000006
+	blaZ_105_FQJS01000007
+	blaZ_106_FQHX01000011
+	blaZ_107_FQDM01000011
+	blaZ_108_FQPO01000005
+	blaZ_41_AENR01000015
+	blaZ_86_AIZE01000023
+	blaZ_109_AOAS01000022
+	blaZ_110_AJCZ01000013
+	blaZ_111_AJCN01000010
+	blaZ_112_AKGL01000044
+	blaZ_113_AHVS01000008
+	blaZ_114_NC_013379
+	blaZ_115_FN433596
+	blaZ_116_NC_013348
+	blaZ_117_ACHE01000004
+	blaZ_118_NC_004461
+	blaZ_119_NZ_CANQ01000029
+	blaZ_120_NZ_ALWG01000005
+	blaZ_121_AIWM01000014
+	blaZ_122_NZ_AJGE01000057
+	blaZ_123_NC_013653
+	blaZ_124_NC_013944
+	blaZ_125_CP003194
+	blaZ_126_NC_013374
+	blaZ_127_ACFR01000018
+	blaZ_128_GQ900471
+	blaZ_129_CP003194
+	blaZ_130_AHKZ01000073
+	blaZ_131_GQ900485
+	blaZ_132_AHVO01000010
+	blaZ_133_AIDT01000014
+	blaZ_134_NZ_AJGE01000047
+	blaZ_135_AB811795
+	blaZ_136_NZ_ALWE01000009
+	blaZ_81_FGJZ01000020
+	blaZ_138_CP003979
+	Modified:
+	blaOXA-307_1_NG050611  -> blaOXA-307_1_NG_050611
+	blaOXA-287_1_NG050609  -> blaOXA-287_1_NG_050609
+	blaOXA-293_1_NG050610 -> blaOXA-289_1_APRM01000005
+	blaOXA-466_1_KR061501
+	blaOXA-308_1_NG049603 -> blaOXA-308_1_APPN01000080
+	blaOXA-306_1_NG049602 -> blaOXA-306_1_APSB01000022
+	blaOXA-303_1_NG049599 -> blaOXA-303_1_APSD01000035
+	blaOXA-302_1_NG049598 -> blaOXA-302_1_APRT01000004
+	blaOXA-299_1_NG049594 -> blaOXA-299_1_APQD01000016
+	blaOXA-298_1_NG049593 -> blaOXA-298_1_APSA01000003
+	blaOXA-1_1_J02967 -> blaOXA-1_1_HQ170510
+	blaOXA-2_1_GQ466184 -> blaOXA-2_2_GQ466184
+	blaOXA-2_2_AY444814 -> blaOXA-2_1_DQ112222
+	blaOXA-5_1_X58272 -> blaOXA-306_1_NG049602
+	blaOXA-10_2_EU886981 -> blaOXA-9_1_KQ089875
+	blaOXA-17_2_DQ902344 -> blaOXA-17_1_DQ902344
+	blaOXA-18_1_EU503121 -> blaOXA-18_1_U85514
+	blaOXA-20_1_AF024602 -> blaOXA-20_1_AY307114
+	blaOXA-21_2_DQ993182 -> blaOXA-21_1_AB626885
+	blaOXA-23_1_HQ700358 -> blaOXA-23_1_AY795964
+	blaOXA-28_1_FJ374756 -> blaOXA-28_1_AF231133
+	blaOXA-46_1_AJ969237 -> blaOXA-46_1_AF317511
+	blaOXA-56_1_AY660529 -> blaOXA-56_1_AY445080
+	blaOXA-60_1_AY664506 -> blaOXA-60_1_AF525303
+	blaOXA-66_4_FJ360530 -> blaOXA-66_1_AY750909
+	blaOXA-69_1_HM564339 -> blaOXA-69_1_AY859527
+	blaOXA-71_1_AY859528 -> blaOXA-71_1_AY750913
+	blaOXA-72_1_GU199039 -> blaOXA-72_1_AY739646
+	blaOXA-82_2_EU019536 -> blaOXA-82_1_DQ987479
+	blaOXA-69_1_HM564339 -> blaOXA-89_1_DQ445683
+	blaOXA-98_1_AM279652 -> blaOXA-98_1_EU255288
+	blaOXA-107_1_EF650033 -> blaOXA-107_1_LAVJ01000082
+	blaOXA-114_1_HM368376 -> blaOXA-114g_1_HM368376
+	blaOXA-114_2_HM368375 -> blaOXA-114f_1_HM368375
+	blaOXA-114_3_HM104634 -> blaOXA-114e_1_HM104634
+	blaOXA-114_4_HM104633 -> blaOXA-114d_1_HM104633
+	blaOXA-114_5_HM056041 -> blaOXA-114c_1_HM056041
+	blaOXA-114_6_HM056040 -> blaOXA-114a_1_EU188842
+	blaOXA-119_1_AY139598 -> blaOXA-119_1_DQ767903
+	blaOXA-120_1_HE963768 -> blaOXA-120_1_EU255289
+	blaOXA-127_1_EU255296
+	blaOXA-129_1_AM932669 -> blaOXA-129_1_FJWZ01000025
+	blaOXA-136_1_EU086833 -> blaOXA-136_1_EU086831
+	blaOXA-137_1_EU086836 -> blaOXA-137_1_EU086834
+	blaOXA-142_1_EU358785 -> blaOXA-142_1_LC169567
+	blaOXA-146_1_FJ194460 -> blaOXA-146_1_FJ194494
+	blaOXA-181_1_HM992946 -> blaOXA-181_1_CM004561
+	blaOXA-204_1_JQ809466 -> blaOXA-204_1_KP027885
+	blaOXA-207_1_JQ838185 -> blaOXA-207_1_LLFS01000355
+	blaOXA-208_1_FR853176 -> blaOXA-208_1_KF305665
+	blaOXA-224_1_JN596991 -> blaOXA-224_1_JN412067
+	blaOXA-243_1_JX206446 -> blaOXA-243_1_AFRQ01000031
+	blaOXA-244_1_JX438000 -> blaOXA-244_1_KP659189
+	blaZ_32_AP004832 -> blaZ_1_CP000704
+	blaZ_34_AP003139 -> blaZ_2_CP000731
+	blaZ_35_AJ302698 -> blaZ_5_AJ302698
+	blaZ_36_AJ400722 -> blaZ_11_AJ400722
+	blaOXA-297_1_NG049592 -> blaOXA-297_1_APRR01000006
+	blaOXA-296_1_NG049591 -> blaOXA-296_1_APOH01000009
+	blaOXA-295_1_NG049590 -> blaOXA-295_1_APRW01000016
+	blaOXA-294_1_NG049589 -> blaOXA-294_1_APPC01000015
+	blaOXA-292_1_NG049588 -> blaOXA-292_1_APRO01000007
+	blaOXA-291_1_NG049587 -> blaOXA-291_1_APRL01000010
+	blaOXA-288_1_NG049585 -> blaOXA-288_1_APRN01000033
+	blaOXA-286_1_NG049584 -> blaOXA-286_1_APOI01000030
+	blaOXA-279_1_NG049576 -> blaOXA-279_1_APOM01000058
+	blaOXA-275_1_NG049572 -> blaOXA-275_1_APPJ01000001
+	blaOXA-274_1_NG049571 -> blaOXA-274_1_APOS01000038
+	blaOXA-266_1_NG049562 -> blaOXA-266_1_APPO01000008
+	blaOXA-151_1_KP771979 -> blaOXA-151_1_CP009553
+	Deleted:
+	blaOXA-504_1_KT355710
+	blaOXA-491_1_JAIV01000087
+	blaOXA-464_1_JAIX01000028
+	blaOXA-2_1_DQ310703
+	blaOXA-9_2_JF703130
+	blaOXA-10_1_HM175875
+	blaOXA-12_1_U10251
+	blaOXA-14_1_L38523
+	blaOXA-50_1_AY306135
+	blaOXA-50_2_AY306133
+	blaOXA-50_3_AY306132
+	blaOXA-50_3_AY306130
+	blaOXA-51_1_AJ309734
+	blaOXA-51_3_EU255296
+	blaOXA-51_4_EU255295
+	blaOXA-51_5_EU255294
+	blaOXA-51_6_EU255293
+	blaOXA-51_7_EU255292
+	blaOXA-51_8_EU255291
+	blaOXA-51_9_EU255290
+	blaOXA-51_11_EU255288
+	blaOXA-58_14_EU107364
+	blaOXA-60_1_AY664506
+	blaOXA-60_2_AY664505
+	blaOXA-60_3_AY664504
+	blaOXA-60_4_AY662675
+	blaOXA-82_1_GQ352402
+	blaOXA-85_1_AY227054
+	blaOXA-117_2_EU220745
+	blaOXA-136_2_EU086832
+	blaOXA-436_1_KT959103
 2018-07-23	Modified:
-		mef(A)_3_AF227521 -> mef(A)_3_AF227520
-		mph(D)_1_AB048591 -> mph(C)_3_AM180068
-		mph(E)_3_EU294228 -> mph(E)_1_DQ839391
-		vat(G)_1_GQ205627 -> vat(H)_1_GQ205627
-		Added:
-		mef(A)_4_HG423652
-		mph(C)_4_AM397632
-		mph(C)_5_AM180067
-		mph(E)_2_JF769133
-		vga(A)_3_JQ312422
-		vga(A)V_1_AF186237
-		vga(A)LC_4_JQ312423
-		tva(A)_1_ENA_SOX29786
-		mph(N)_1_KF648874
-		mph(I)_1_KX531056
-		mph(J)_1_KY753883
-		mdf(A)_1_Y08743
-		mdt(A)_1_X92946
-		mre(A)_1_U92073
-		cmr_1_U43535
-		Deleted:
-		vat(D)_2_AF368302
+	mef(A)_3_AF227521 -> mef(A)_3_AF227520
+	mph(D)_1_AB048591 -> mph(C)_3_AM180068
+	mph(E)_3_EU294228 -> mph(E)_1_DQ839391
+	vat(G)_1_GQ205627 -> vat(H)_1_GQ205627
+	Added:
+	mef(A)_4_HG423652
+	mph(C)_4_AM397632
+	mph(C)_5_AM180067
+	mph(E)_2_JF769133
+	vga(A)_3_JQ312422
+	vga(A)V_1_AF186237
+	vga(A)LC_4_JQ312423
+	tva(A)_1_ENA_SOX29786
+	mph(N)_1_KF648874
+	mph(I)_1_KX531056
+	mph(J)_1_KY753883
+	mdf(A)_1_Y08743
+	mdt(A)_1_X92946
+	mre(A)_1_U92073
+	cmr_1_U43535
+	Deleted:
+	vat(D)_2_AF368302
 2018-07-23	Added:
-		dfrA19_1_EU855687
-		dfrA1_1_FJ591049
-		dfrA1_2_HM055363
-		dfrA1_3_GU726913
-		dfrA1_4_AB188271
-		dfrA1_5_EU089668
-		dfrA1_6_FJ215857
-		dfrA1_7_AJ400733
-		dfrA1_8_X00926
-		dfrA1_9_AJ238350
-		dfrA1_10_AF203818
-		dfrA1_11_AJ419168
-		dfrA1_12_AY141977
-		dfrA1_13_DQ018382
-		dfrA1_14_AB199789
-		dfrA1_15_FM207631
-		dfrA1_16_FJ001872
-		dfrA1_17_FJ489928
-		dfrA12_1_FJ763641
-		dfrA12_2_KJ546436
-		dfrA12_3_KJ568502
-		dfrA12_4_EU650399
-		dfrA12_5_FR875302
-		dfrA12_6_AY551331
-		dfrA12_7_AB196348
-		dfrA12_8_AM040708
-		dfrA12_9_DQ995286
-		dfrA12_10_FM877486
-		dfrA14_1_KF921535
-		dfrA14_3_Z50804
-		dfrA14_4_AF393510
-		dfrA15_1_AF156486
-		dfrA15_2_AF221900
-		dfrA15_3_DQ647028
-		dfrA16_2_AF174129
-		dfrA16_3_AY878718
-		dfrA16_4_EU158182
-		dfrA22_1_KC200566
-		dfrA22_2_KF525301
-		dfrA22_3_FM957884
-		dfrA22_4_AJ628423
-		dfrA22_5_AJ968952
-		dfrA29_1_AM237806
-		dfrA5_3_KF030794
-		dfrA5_2_FJ001870
-		dfrA5_4_AY139589
-		dfrA6_2_FJ905898
-		dfrA7_1_AB161450
-		dfrA7_2_AJ884724
-		dfrA7_3_EU339235
-		dfrA7_4_FN563072
-		dfrA7_5_AJ419170
-		dfrB1_2_AM993098
-		dfrB2_2_AY553333
-		dfrB4_2_EU339233
-		dfrB4_3_HQ317921
-		dfrD_1_Z50141
-		dfrA17_11_JN645876
-		dfrA17_2_JN645879
-		dfrA17_3_JQ414038
-		dfrA1_4_AB188271
-		dfrA17_5_GU358475
-		dfrA17_6_AF180469
-		dfrA17_7_AB196349
-		dfrA17_8_AM932673
-		dfrA17_9_FJ807902
-		dfrA17_10_AM937244
-		Deleted:
-		dfrA12_1_AB571791
-		dfrA15_1_HM449019
-		dfrA22_1_HM173356
-		dfrA16_1_DQ316603 	
-		dfrA3b_1_AY878717
-		dfrA16_1_FN561628
-		dfrA1_25_AJ844287
-		dfrA1_30_JQ690541
-		dfrA1_2_AJ419168
-		dfrA7_1_AJ419170
-		dfrA1_5_AJ238350
-		dfrA1_1_X00926
-		dfrA7_1_JF806498
-		dfrA29_1_AM237806
-		dfrD_1_Z50141
-		Modified:
-		dfrB2_1_DQ839391 -> dfrB2_1_J01773
-		dfrA14_1_DQ388123 -> dfrA14_5_DQ388123
-		dfrK_4_FN677369 -> dfrK_2_FN677369
-		dfrB1_2_U36276 -> dfrB1_1_U36276
-		dfrK_8_FN812951 -> dfrK_3_FN812951
-		dfrB4_1_FM877484 -> dfrB4_1_AJ429132
-		dfrB3_1_FM877478 -> dfrB3_2_FM877478
-		dfrA21_1_AM932669 -> dfrA21_1_AY552589
-		dfrA15b_1_AJ867237 -> dfrA15_4_AJ867237
-		dfrA14_1_Z50805 -> dfrA14_2_Z50805
+	dfrA19_1_EU855687
+	dfrA1_1_FJ591049
+	dfrA1_2_HM055363
+	dfrA1_3_GU726913
+	dfrA1_4_AB188271
+	dfrA1_5_EU089668
+	dfrA1_6_FJ215857
+	dfrA1_7_AJ400733
+	dfrA1_8_X00926
+	dfrA1_9_AJ238350
+	dfrA1_10_AF203818
+	dfrA1_11_AJ419168
+	dfrA1_12_AY141977
+	dfrA1_13_DQ018382
+	dfrA1_14_AB199789
+	dfrA1_15_FM207631
+	dfrA1_16_FJ001872
+	dfrA1_17_FJ489928
+	dfrA12_1_FJ763641
+	dfrA12_2_KJ546436
+	dfrA12_3_KJ568502
+	dfrA12_4_EU650399
+	dfrA12_5_FR875302
+	dfrA12_6_AY551331
+	dfrA12_7_AB196348
+	dfrA12_8_AM040708
+	dfrA12_9_DQ995286
+	dfrA12_10_FM877486
+	dfrA14_1_KF921535
+	dfrA14_3_Z50804
+	dfrA14_4_AF393510
+	dfrA15_1_AF156486
+	dfrA15_2_AF221900
+	dfrA15_3_DQ647028
+	dfrA16_2_AF174129
+	dfrA16_3_AY878718
+	dfrA16_4_EU158182
+	dfrA22_1_KC200566
+	dfrA22_2_KF525301
+	dfrA22_3_FM957884
+	dfrA22_4_AJ628423
+	dfrA22_5_AJ968952
+	dfrA29_1_AM237806
+	dfrA5_3_KF030794
+	dfrA5_2_FJ001870
+	dfrA5_4_AY139589
+	dfrA6_2_FJ905898
+	dfrA7_1_AB161450
+	dfrA7_2_AJ884724
+	dfrA7_3_EU339235
+	dfrA7_4_FN563072
+	dfrA7_5_AJ419170
+	dfrB1_2_AM993098
+	dfrB2_2_AY553333
+	dfrB4_2_EU339233
+	dfrB4_3_HQ317921
+	dfrD_1_Z50141
+	dfrA17_11_JN645876
+	dfrA17_2_JN645879
+	dfrA17_3_JQ414038
+	dfrA1_4_AB188271
+	dfrA17_5_GU358475
+	dfrA17_6_AF180469
+	dfrA17_7_AB196349
+	dfrA17_8_AM932673
+	dfrA17_9_FJ807902
+	dfrA17_10_AM937244
+	Deleted:
+	dfrA12_1_AB571791
+	dfrA15_1_HM449019
+	dfrA22_1_HM173356
+	dfrA16_1_DQ316603
+	dfrA3b_1_AY878717
+	dfrA16_1_FN561628
+	dfrA1_25_AJ844287
+	dfrA1_30_JQ690541
+	dfrA1_2_AJ419168
+	dfrA7_1_AJ419170
+	dfrA1_5_AJ238350
+	dfrA1_1_X00926
+	dfrA7_1_JF806498
+	dfrA29_1_AM237806
+	dfrD_1_Z50141
+	Modified:
+	dfrB2_1_DQ839391 -> dfrB2_1_J01773
+	dfrA14_1_DQ388123 -> dfrA14_5_DQ388123
+	dfrK_4_FN677369 -> dfrK_2_FN677369
+	dfrB1_2_U36276 -> dfrB1_1_U36276
+	dfrK_8_FN812951 -> dfrK_3_FN812951
+	dfrB4_1_FM877484 -> dfrB4_1_AJ429132
+	dfrB3_1_FM877478 -> dfrB3_2_FM877478
+	dfrA21_1_AM932669 -> dfrA21_1_AY552589
+	dfrA15b_1_AJ867237 -> dfrA15_4_AJ867237
+	dfrA14_1_Z50805 -> dfrA14_2_Z50805
 2018-07-16	Modified:
-		mcr-3_1_NG055493 -> mcr-3.1_1_KY924928
-		mcr-3_2_NG055497 -> mcr-3.2_1_NG055523
-		mcr-3.1_KY924928 -> mcr-3.4_1_NG055492
-		mcr-3.3_1_NG055783
-		mcr-3.2_1_NG055523 -> mcr-3.5_1_MF463699
-		mcr-3.4_1_NG055492 -> mcr-3.11_1_MG489958
-		mcr-3.5_1_MF463699 -> mcr-3.19_1_NG055497
-		mcr-3.10_1_MG214533 -> mcr-3.20_1_NG055493
-		mcr-3.11_1_MG489958 -> mcr-3.22_1_NG060581
-		mcr-4.2_1_MG581979 -> mcr-4.2_1_MG459157
-		Added:
-		mcr-1.14_1_LS398440
-		mcr-1.13_1_MG384739
-		mcr-3.6_1_MF598076
-		mcr-3.7_1_MF598077
-		mcr-3.8_1_MF598079
-		mcr-3.9_1_MF598080
-		mcr-3.10_1_MG214533
-		mcr-3.12_1_MG564491
-		mcr-3.13_1_MH332763
-		mcr-3.14_1_MH332764
-		mcr-3.15_1_MH332765
-		mcr-3.16_1_MH332766
-		mcr-3.17_1_MH332767
-		mcr-3.18_1_MH332768
-		mcr-3.21_1_NG060582
-		mcr-3.23_1_NG060583
-		mcr-3.24_1_NG060580
-		mcr-3.25_1_NG060585
-		mcr-4.4_1_MG822665
-		mcr-4.5_1_MG822664
-		mcr-8_1_MG736312
+	mcr-3_1_NG055493 -> mcr-3.1_1_KY924928
+	mcr-3_2_NG055497 -> mcr-3.2_1_NG055523
+	mcr-3.1_KY924928 -> mcr-3.4_1_NG055492
+	mcr-3.3_1_NG055783
+	mcr-3.2_1_NG055523 -> mcr-3.5_1_MF463699
+	mcr-3.4_1_NG055492 -> mcr-3.11_1_MG489958
+	mcr-3.5_1_MF463699 -> mcr-3.19_1_NG055497
+	mcr-3.10_1_MG214533 -> mcr-3.20_1_NG055493
+	mcr-3.11_1_MG489958 -> mcr-3.22_1_NG060581
+	mcr-4.2_1_MG581979 -> mcr-4.2_1_MG459157
+	Added:
+	mcr-1.14_1_LS398440
+	mcr-1.13_1_MG384739
+	mcr-3.6_1_MF598076
+	mcr-3.7_1_MF598077
+	mcr-3.8_1_MF598079
+	mcr-3.9_1_MF598080
+	mcr-3.10_1_MG214533
+	mcr-3.12_1_MG564491
+	mcr-3.13_1_MH332763
+	mcr-3.14_1_MH332764
+	mcr-3.15_1_MH332765
+	mcr-3.16_1_MH332766
+	mcr-3.17_1_MH332767
+	mcr-3.18_1_MH332768
+	mcr-3.21_1_NG060582
+	mcr-3.23_1_NG060583
+	mcr-3.24_1_NG060580
+	mcr-3.25_1_NG060585
+	mcr-4.4_1_MG822665
+	mcr-4.5_1_MG822664
+	mcr-8_1_MG736312
 2018-07-03	Deleted:
-		mecC_1_FR823292
-		mecC_2_FR821779
-		mecA_4_AB033763
-		mecA_7_BA000018
-		mecA_10_AB512767
-		mecA_14_AB505630
-		mecA_15_AB505628
-		Added:
-		mecA_1_NC_002745
-		mecA2_1_AM048811
-		mecA_2_NC_002951
-		mecA_3_Y13095
-		mecC2_1_KF955540
-		mecA1_1_AB547235
-		mecA_4_AB546266
-		mcr-3.1_KY924928
-		mecA1_2_AY820253
-		mecA_5_AB546267
-		mecA2_2_AB546780
-		mecA1_3_Y13094
-		mecB_1_NC_011996
-		mecA_6_BX571856
-		mecA_7_HE861945
-		mecA1_4_AB547236
-		mecA_8_NC_007168
-		mecA1_5_AB547234
-		mcr-3.1_KY924928
-		mecC_2_FR823292
-		mecD_1_KY013611
-		mecC_3_KR732654
-		mecC_4_HG515014
+	mecC_1_FR823292
+	mecC_2_FR821779
+	mecA_4_AB033763
+	mecA_7_BA000018
+	mecA_10_AB512767
+	mecA_14_AB505630
+	mecA_15_AB505628
+	Added:
+	mecA_1_NC_002745
+	mecA2_1_AM048811
+	mecA_2_NC_002951
+	mecA_3_Y13095
+	mecC2_1_KF955540
+	mecA1_1_AB547235
+	mecA_4_AB546266
+	mcr-3.1_KY924928
+	mecA1_2_AY820253
+	mecA_5_AB546267
+	mecA2_2_AB546780
+	mecA1_3_Y13094
+	mecB_1_NC_011996
+	mecA_6_BX571856
+	mecA_7_HE861945
+	mecA1_4_AB547236
+	mecA_8_NC_007168
+	mecA1_5_AB547234
+	mcr-3.1_KY924928
+	mecC_2_FR823292
+	mecD_1_KY013611
+	mecC_3_KR732654
+	mecC_4_HG515014
 2018-07-03	Added:
-		crpP_1_HM560971
+	crpP_1_HM560971
 2018-07-03	Modified:
-		blaIMP-1_1_DQ522237 -> blaIMP-1_1_EF027105
+	blaIMP-1_1_DQ522237 -> blaIMP-1_1_EF027105
 2018-06-25	Modified:
-		aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
-		aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
-		cfr(B)_1_KR610408 -> cfr(B)_3_KR610408
-		Deleted:
-		mef(A)_4_AF274302
+	aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
+	aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
+	cfr(B)_1_KR610408 -> cfr(B)_3_KR610408
+	Deleted:
+	mef(A)_4_AF274302
 2018-06-22	Modified:
-		catB4_1_EU935739 -> catB4_1_AF322577
+	catB4_1_EU935739 -> catB4_1_AF322577
 2018-06-11	Deleted:
-		aph(2'')-If_1_KF652097
-		aph(2'')-Ih_1_KF652096
-		ant(2'')-Ia_18_M86913
-		aph(4)-Ib_1_X03615
-		aph(3'')-Ib_1_M28829
-		aph(3'')-Ib_3_AF321550
-		aph(6)-Id_1_M28829
-		fosB1_2_KP795112
-		erm(F)_2_M17124
-		erm(R)_2_AY623658
-		mef(A)_10_AF376746
-		erm(B)_23_Y00116
-		erm(B)_24_M11180
-		lsa(E)_1_AF408195
-		msr(E)_1_FR751518
-		mph(E)_5_DQ839391
-		lmr(B)_1_X62867
-		mef(A)_5_AF227520
-		vat(E)_6_AF242872
-		erm(C)_6_X82668
-		erm(33)_1_AJ579365
-		erm(U)_1_NG_047843
-		qnrB79_1_KM985472
-		qnrB88_1_KX118608
-		tet(C)_4_AY043298
-		tet(O/W/32/O)_3_FR823304
-		tet(O/W/32/O)_4_FR824044
-		tet(0/32/0)_4_AINH01000038
-		tet(0/32/0)_5_NZ_AINJ01000054
-		tet(0/32/0)_6_AIOQ01000025
-		tet(S/M)_2_AY534326
-		tet(W/32/O)_4_AM710604
-		Modified:
-		mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
-		lnu(B)_2_JQ861959 -> lnu(B)_1_JQ861959
-		cfrB_1_KR610408 -> cfr(B)_1_KR610408
-		tet(0/32/0)_2_AJ295238 -> tet(O/32/O)_2_AJ295238
-		tet(0/32/0)_3_NZ_AUJS01000017 -> tet(O/32/O)_3_NZ_AUJS01000017
-		tet(0/32/0)_7_FP929050 -> tet(O/32/O)_7_FP929050
+	aph(2'')-If_1_KF652097
+	aph(2'')-Ih_1_KF652096
+	ant(2'')-Ia_18_M86913
+	aph(4)-Ib_1_X03615
+	aph(3'')-Ib_1_M28829
+	aph(3'')-Ib_3_AF321550
+	aph(6)-Id_1_M28829
+	fosB1_2_KP795112
+	erm(F)_2_M17124
+	erm(R)_2_AY623658
+	mef(A)_10_AF376746
+	erm(B)_23_Y00116
+	erm(B)_24_M11180
+	lsa(E)_1_AF408195
+	msr(E)_1_FR751518
+	mph(E)_5_DQ839391
+	lmr(B)_1_X62867
+	mef(A)_5_AF227520
+	vat(E)_6_AF242872
+	erm(C)_6_X82668
+	erm(33)_1_AJ579365
+	erm(U)_1_NG_047843
+	qnrB79_1_KM985472
+	qnrB88_1_KX118608
+	tet(C)_4_AY043298
+	tet(O/W/32/O)_3_FR823304
+	tet(O/W/32/O)_4_FR824044
+	tet(0/32/0)_4_AINH01000038
+	tet(0/32/0)_5_NZ_AINJ01000054
+	tet(0/32/0)_6_AIOQ01000025
+	tet(S/M)_2_AY534326
+	tet(W/32/O)_4_AM710604
+	Modified:
+	mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
+	lnu(B)_2_JQ861959 -> lnu(B)_1_JQ861959
+	cfrB_1_KR610408 -> cfr(B)_1_KR610408
+	tet(0/32/0)_2_AJ295238 -> tet(O/32/O)_2_AJ295238
+	tet(0/32/0)_3_NZ_AUJS01000017 -> tet(O/32/O)_3_NZ_AUJS01000017
+	tet(0/32/0)_7_FP929050 -> tet(O/32/O)_7_FP929050
 2018-06-01	Deleted:
-		VanR-A_1_FJ866609
-		VanA_1_FJ866609
-		VanY-A_1_FJ866609
-		VanZ-A_1_FJ866609
-		VanS-A_2_M97297
-		VanA_2_M97297
-		VanY-A_2_M97297
-		VanR-B_1_AF192329
-		VanS-B_1_AF192329
-		VanY-B_1_AF192329
-		VanW-B_1_AF192329
-		VanH-B_1_AF192329
-		VanB_1_AF192329
-		VanX-B_1_AF192329
-		VanC_1_AF162694
-		VanXY-C_1_AF162694
-		VanT-C_1_AF162694
-		VanR-C_1_AF162694
-		VanS-C_1_AF162694
-		VanC_2_DQ022190
-		VanT-C_1_DQ022190
-		VanS-C_2_DQ022190
-		VanC_3_EU151752
-		VanXY-C_3_EU151752
-		VanT-C_2_EU151752
-		VanR-C_3_EU151752
-		VanS-C_3_EU151752
-		VanC_4_EU151753
-		VanXY-C_4_EU151753
-		VanT-C_3_EU151753
-		VanR-C_4_EU151753
-		VanS-C_4_EU151753
-		VanC_5_EU151754
-		VanXY-C_5_EU151754
-		VanR-D_1_AB242319
-		VanS-D_1_AB242319
-		VanY-D_1_AB242319
-		VanH-D_1_AB242319
-		VanD_1_AB242319
-		VanX-D_1_AB242319
-		VanR-D_2_AF175293
-		VanS-D_2_AF175293
-		VanY-D_2_AF175293
-		VanH-D_2_AF175293
-		VanD_2_AF175293
-		VanX-D_2_AF175293
-		VanY-D_3_AY082011
-		VanH-D_3_AY082011
-		VanD_3_AY082011
-		VanR-D_4_AY489045
-		VanS-D_3_AY489045
-		VanY-D_4_AY489045
-		VanH-D_4_AY489045
-		VanD_4_AY489045
-		VanX-D_4_AY489045
-		VanR-F_1_AF155139
-		VanS-F_1_AF155139
-		VanY-F_1_AF155139
-		VanZ-F_1_AF155139
-		VanH-E_1_AF155139
-		VanE_1_AF155139
-		VanX-E_1_AF155139
-		VanU-G_1_AY271782
-		VanR-G_1_AY271782
-		VanS-G_1_AY271782
-		VanY-G_1_DQ212986
-		VanW-G_1_AY271782
-		VanG_1_AY271782
-		VanXY-G_1_AY271782
-		VanT-G_1_AY271782
-		VanL_1_EU250284
-		VanXY-L_1_EU250284
-		VanTm-L_1_EU250284
-		VanTr-L_1_EU250284
-		VanR-L_1_EU250284
-		VanS-L_1_EU250284
-		VanR-M_1_FJ349556
-		VanS-M_1_FJ349556
-		VanY-M_1_FJ349556
-		VanH-M_1_FJ349556
-		VanM_1_FJ349556
-		VanX-M_1_FJ349556
-		VanH-Sc_1_AL939117
-		ddlA2-Sc_2_AL939117
-		VanX-Sc_1_AL939117
-		VanR-Pt_3_DQ018710
-		VanS-Pt_3_DQ018710
-		VanH-Pt_3_DQ018710
-		VanPt_3_DQ018710
-		VanX-Pt_3_DQ018710
-		VanY-Pt_3_DQ018710
-		VanZ-Pt_3_DQ018710
-		VanR-Pt2_4_AY926880
-		VanS-Pt2_4_AY926880
-		VanH-Pt2_4_AY926880
-		VanPt2_4_AY926880
-		VanX-Pt2_4_AY926880
-		VanY-Pt2_4_AY926880
-		VanR-Pt_5_DQ018711
-		VanS-Pt_5_DQ018711
-		VanW-Pt_2_DQ018711
-		VanH-Pt_5_DQ018711
-		VanPt_5_DQ018711
-		VanX-Pt_5_DQ018711
-		VanY-Pt_5_DQ018711
-		VanZ-Pt_4_DQ018711
-		VanH-Ac1_6_DQ246438
-		VanX-Ac1_6_DQ246438
-		VanH-Ac2_7_AY618461
-		VanX-Ac2_7_AY618461
-		VanH-Ao1_8_AF060799
-		VanX-Ao1_8_AF060799
-		VanH-Ao2_9_HQ679900
-		VanAo2_6_HQ679900
-		VanX-Ao2_9_HQ679900
-		VanH-A(Bc)_7_Y15704
-		VanN_1_JF802084
-		VanXY-N_1_JF802084
-		VanT-N_1_JF802084
-		VanR-N_1_JF802084
-		VanS-N_1_JF802084
-		Modified:
-		VanH-A_1_FJ866609 -> VanHAX_1_FJ866609
-		VanX-A_1_FJ866609 -> VanX_bc_1_Y15708
-		Added:
-		VanHAX_2_M97297
-		VanHAX_PT_1_DQ018710
-		VanHAX_PA_1_DQ018711
-		VanHAX_PT_2_AY926880
-		VanH_bc_1_Y15705
-		VanA_bc_1_Y15704
-		dldHA2X_1_AL939117
-		VanHBX_1_AF192329
-		VanHBX_2_U35369
-		VanC1XY_1_AF162694
-		VanXY_C2_1_AY033089
-		VanC2_1_L29638
-		VanC3XY_1_AY033764
-		VanC1XY_2_DQ022190
-		VanC2XY_1_EU151754
-		VanC4XY_1_EU151752
-		VanC4XY_2_EU151753
-		VanC2XY_2_EU151755
-		VanC4XY_3_EU151756
-		VanC2XY_3_EU151757
-		VanC2XY_4_EU151758
-		VanC3XY_2_EU151759
-		VanC2XY_5_EU151760
-		VanHDX_6_DQ172830
-		VanHDX_7_AB242319
-		VanHDX_3_AF175293
-		VanHDX_4_AY082011
-		VanHDX_5_AY489045
-		VanHDX_1_AF130997
-		VanHDX_2_EU999036
-		VanHFX_1_AF155139
-		VanE_1_AF136925
-		VanEXY_1_FJ872411
-		VanGXY_1_AY271782
-		VanG2XY_1_FJ872410
-		VanLXY_1_EU250284
-		VanHMX_1_FJ349556
-		VanNXY_1_JF802084
-		VanHOX_1_KF478993
-		vanXmurFvanWI_1_CP001336
-		vanXmurFvanKWI_1_NZAGAF01000127
-		vanXmurFvanKWI_2_AP008230
+	VanR-A_1_FJ866609
+	VanA_1_FJ866609
+	VanY-A_1_FJ866609
+	VanZ-A_1_FJ866609
+	VanS-A_2_M97297
+	VanA_2_M97297
+	VanY-A_2_M97297
+	VanR-B_1_AF192329
+	VanS-B_1_AF192329
+	VanY-B_1_AF192329
+	VanW-B_1_AF192329
+	VanH-B_1_AF192329
+	VanB_1_AF192329
+	VanX-B_1_AF192329
+	VanC_1_AF162694
+	VanXY-C_1_AF162694
+	VanT-C_1_AF162694
+	VanR-C_1_AF162694
+	VanS-C_1_AF162694
+	VanC_2_DQ022190
+	VanT-C_1_DQ022190
+	VanS-C_2_DQ022190
+	VanC_3_EU151752
+	VanXY-C_3_EU151752
+	VanT-C_2_EU151752
+	VanR-C_3_EU151752
+	VanS-C_3_EU151752
+	VanC_4_EU151753
+	VanXY-C_4_EU151753
+	VanT-C_3_EU151753
+	VanR-C_4_EU151753
+	VanS-C_4_EU151753
+	VanC_5_EU151754
+	VanXY-C_5_EU151754
+	VanR-D_1_AB242319
+	VanS-D_1_AB242319
+	VanY-D_1_AB242319
+	VanH-D_1_AB242319
+	VanD_1_AB242319
+	VanX-D_1_AB242319
+	VanR-D_2_AF175293
+	VanS-D_2_AF175293
+	VanY-D_2_AF175293
+	VanH-D_2_AF175293
+	VanD_2_AF175293
+	VanX-D_2_AF175293
+	VanY-D_3_AY082011
+	VanH-D_3_AY082011
+	VanD_3_AY082011
+	VanR-D_4_AY489045
+	VanS-D_3_AY489045
+	VanY-D_4_AY489045
+	VanH-D_4_AY489045
+	VanD_4_AY489045
+	VanX-D_4_AY489045
+	VanR-F_1_AF155139
+	VanS-F_1_AF155139
+	VanY-F_1_AF155139
+	VanZ-F_1_AF155139
+	VanH-E_1_AF155139
+	VanE_1_AF155139
+	VanX-E_1_AF155139
+	VanU-G_1_AY271782
+	VanR-G_1_AY271782
+	VanS-G_1_AY271782
+	VanY-G_1_DQ212986
+	VanW-G_1_AY271782
+	VanG_1_AY271782
+	VanXY-G_1_AY271782
+	VanT-G_1_AY271782
+	VanL_1_EU250284
+	VanXY-L_1_EU250284
+	VanTm-L_1_EU250284
+	VanTr-L_1_EU250284
+	VanR-L_1_EU250284
+	VanS-L_1_EU250284
+	VanR-M_1_FJ349556
+	VanS-M_1_FJ349556
+	VanY-M_1_FJ349556
+	VanH-M_1_FJ349556
+	VanM_1_FJ349556
+	VanX-M_1_FJ349556
+	VanH-Sc_1_AL939117
+	ddlA2-Sc_2_AL939117
+	VanX-Sc_1_AL939117
+	VanR-Pt_3_DQ018710
+	VanS-Pt_3_DQ018710
+	VanH-Pt_3_DQ018710
+	VanPt_3_DQ018710
+	VanX-Pt_3_DQ018710
+	VanY-Pt_3_DQ018710
+	VanZ-Pt_3_DQ018710
+	VanR-Pt2_4_AY926880
+	VanS-Pt2_4_AY926880
+	VanH-Pt2_4_AY926880
+	VanPt2_4_AY926880
+	VanX-Pt2_4_AY926880
+	VanY-Pt2_4_AY926880
+	VanR-Pt_5_DQ018711
+	VanS-Pt_5_DQ018711
+	VanW-Pt_2_DQ018711
+	VanH-Pt_5_DQ018711
+	VanPt_5_DQ018711
+	VanX-Pt_5_DQ018711
+	VanY-Pt_5_DQ018711
+	VanZ-Pt_4_DQ018711
+	VanH-Ac1_6_DQ246438
+	VanX-Ac1_6_DQ246438
+	VanH-Ac2_7_AY618461
+	VanX-Ac2_7_AY618461
+	VanH-Ao1_8_AF060799
+	VanX-Ao1_8_AF060799
+	VanH-Ao2_9_HQ679900
+	VanAo2_6_HQ679900
+	VanX-Ao2_9_HQ679900
+	VanH-A(Bc)_7_Y15704
+	VanN_1_JF802084
+	VanXY-N_1_JF802084
+	VanT-N_1_JF802084
+	VanR-N_1_JF802084
+	VanS-N_1_JF802084
+	Modified:
+	VanH-A_1_FJ866609 -> VanHAX_1_FJ866609
+	VanX-A_1_FJ866609 -> VanX_bc_1_Y15708
+	Added:
+	VanHAX_2_M97297
+	VanHAX_PT_1_DQ018710
+	VanHAX_PA_1_DQ018711
+	VanHAX_PT_2_AY926880
+	VanH_bc_1_Y15705
+	VanA_bc_1_Y15704
+	dldHA2X_1_AL939117
+	VanHBX_1_AF192329
+	VanHBX_2_U35369
+	VanC1XY_1_AF162694
+	VanXY_C2_1_AY033089
+	VanC2_1_L29638
+	VanC3XY_1_AY033764
+	VanC1XY_2_DQ022190
+	VanC2XY_1_EU151754
+	VanC4XY_1_EU151752
+	VanC4XY_2_EU151753
+	VanC2XY_2_EU151755
+	VanC4XY_3_EU151756
+	VanC2XY_3_EU151757
+	VanC2XY_4_EU151758
+	VanC3XY_2_EU151759
+	VanC2XY_5_EU151760
+	VanHDX_6_DQ172830
+	VanHDX_7_AB242319
+	VanHDX_3_AF175293
+	VanHDX_4_AY082011
+	VanHDX_5_AY489045
+	VanHDX_1_AF130997
+	VanHDX_2_EU999036
+	VanHFX_1_AF155139
+	VanE_1_AF136925
+	VanEXY_1_FJ872411
+	VanGXY_1_AY271782
+	VanG2XY_1_FJ872410
+	VanLXY_1_EU250284
+	VanHMX_1_FJ349556
+	VanNXY_1_JF802084
+	VanHOX_1_KF478993
+	vanXmurFvanWI_1_CP001336
+	vanXmurFvanKWI_1_NZAGAF01000127
+	vanXmurFvanKWI_2_AP008230
 2018-06-01	Modified:
-		aac(6')-Ib-cr_1_DQ303918 -> aac(6')Ib-cr_1_DQ303918
-		aac(6')-Ib-cr_2_EF636461 -> aac(6')Ib-cr_2_EF636461
-		mcr-1.8_1_KY683842 ->mcr_1.8_1_KY683842
-		mcr-3.1_1_KY924928 -> mcr-3.1_KY924928
-		mef(A)_3_AF227520 -> mef(A)_3_AF227521
-		lsa(E)_1_JX560992 -> lsa(E)_1_AF408195
-		erm(42)_2_AB601890
-		Added:
-		erm(B)_10_U86375
-		erm(R)_2_AY623658
-		mef(A)_10_AF376746
-		msr(A)_3_M81802
-		msr(E)_4_EU294228
-		lmr(B)_1_X62867
-		Deleted:
-		mef(A)_4_HG423652
+	aac(6')-Ib-cr_1_DQ303918 -> aac(6')Ib-cr_1_DQ303918
+	aac(6')-Ib-cr_2_EF636461 -> aac(6')Ib-cr_2_EF636461
+	mcr-1.8_1_KY683842 ->mcr_1.8_1_KY683842
+	mcr-3.1_1_KY924928 -> mcr-3.1_KY924928
+	mef(A)_3_AF227520 -> mef(A)_3_AF227521
+	lsa(E)_1_JX560992 -> lsa(E)_1_AF408195
+	erm(42)_2_AB601890
+	Added:
+	erm(B)_10_U86375
+	erm(R)_2_AY623658
+	mef(A)_10_AF376746
+	msr(A)_3_M81802
+	msr(E)_4_EU294228
+	lmr(B)_1_X62867
+	Deleted:
+	mef(A)_4_HG423652
 2018-05-24	Deleted:
-		erm(B)_10_U86375
-		erm(R)_2_AY623658
-		mef(A)_3_AF227521
-		msr(E)_4_EU294228
-		lmr(B)_1_X62867
-		mef(A)_4_AF274302
-		mef(A)_5_AF227520
-		erm(33)_1_AJ579365
-		erm(C)_6_X82668
-		qnrB79_1_KM985472
-		qnrB88_1_KX118608
-		Modified:
-		erm(42)_2_AB601890
-		mef(A)_3_AF227521 -> mef(A)_3_AF227520
-		mef(A)_10_AF376746 -> mef(A)_4_HG423652
-		lsa(E)_1_AF408195 -> lsa(E)_1_JX560992
+	erm(B)_10_U86375
+	erm(R)_2_AY623658
+	mef(A)_3_AF227521
+	msr(E)_4_EU294228
+	lmr(B)_1_X62867
+	mef(A)_4_AF274302
+	mef(A)_5_AF227520
+	erm(33)_1_AJ579365
+	erm(C)_6_X82668
+	qnrB79_1_KM985472
+	qnrB88_1_KX118608
+	Modified:
+	erm(42)_2_AB601890
+	mef(A)_3_AF227521 -> mef(A)_3_AF227520
+	mef(A)_10_AF376746 -> mef(A)_4_HG423652
+	lsa(E)_1_AF408195 -> lsa(E)_1_JX560992
 2018-05-24	Modified:
-		aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
-		aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
-		mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
-		mcr-3.1_KY924928 -> mcr-3.1_1_KY924928
-		cfrB_1_KR610408 -> cfr(B)_3_KR610408
-		qnrB32_2_JN173054 -> qnrB32_1_JN173054
+	aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_1_DQ303918
+	aac(6')Ib-cr_2_EF636461 -> aac(6')-Ib-cr_2_EF636461
+	mcr_1.8_1_KY683842 -> mcr-1.8_1_KY683842
+	mcr-3.1_KY924928 -> mcr-3.1_1_KY924928
+	cfrB_1_KR610408 -> cfr(B)_3_KR610408
+	qnrB32_2_JN173054 -> qnrB32_1_JN173054
 2018-05-23	Deleted:
-		aph(3'')-Ib_2_AF024602
+	aph(3'')-Ib_2_AF024602
 2018-05-22	Added:
-		ere(A)_6_DQ157752
-		ere(D)_1_KP265721
-		vga(A)LC_3_FN806791
-		erm(U)_1_NG_047843
-		erm(37)_1_AL123456
-		poxtA_1_MF095097
-		fexA_2_AM408573
-		sul4_1_MG649393
+	ere(A)_6_DQ157752
+	ere(D)_1_KP265721
+	vga(A)LC_3_FN806791
+	erm(U)_1_NG_047843
+	erm(37)_1_AL123456
+	poxtA_1_MF095097
+	fexA_2_AM408573
+	sul4_1_MG649393
 2018-04-15	Deleted:
-		erm(33)_2_AJ313523
-		Modified:
-		vga(C)_1_GQ205627 -> vga(D)_1_GQ205627
-		vga(C)_2_NC_013034 -> vga(C)_1_FN806792
-		cfrB_1_KR610408 -> cfr(B)_3_KR610408
-		Added:
-		erm(48)_1_LT223129
-		mph(F)_1_AM260957
-		erm(B)_23_Y00116
-		erm(B)_24_M11180
-		erm(46)_1_KM679362
-		lsa(E)_1_AF408195
-		erm(B)_22_X52632
-		lnu(P)_1_FJ589781
-		msr(E)_1_FR751518
-		erm(43)_1_HE650138
-		mph(E)_5_DQ839391
-		mef(C)_1_AB571865
-		lmr(B)_1_X62867
-		erm(47)_1_KU612222
-		erm(B)_26_AF080450
-		mph(G)_1_AB571865
-		lnu(G)_1_KX470419
-		vat(D)_2_AF368302
-		mef(A)_1_AJ971089
-		mef(A)_2_U83667
-		mef(A)_4_AF274302
-		mef(A)_5_AF227520
-		vga(A)LC_2_DQ823382
-		erm(44)v_1_LN623525
-		ere(B)_1_A15097
-		erm(44)_1_HG796218
-		sal(A)_1_KC693025
-		erm(45)_1_LN680996
-		erm(33)_1_AJ579365
-		vat(E)_6_AF242872
-		ere(A)_5_FN396877
-		lnu(B)_2_JQ861959
-		erm(R)_1_M11276
-		erm(B)_25_X72021
-		lnu(E)_1_KF287643
-		vat(G)_1_GQ205627
-		erm(C)_6_X82668
-		erm(F)_1_M14730
-		erm(33)_1_AJ579365
-		cfr(B)_1_KM359439
-		cfr(B)_2_KM359438
-		cfr(C)_2_CANB01000378
-		cmlB1_1_AM296481
-		fexB_1_JN201336
-		EstDL136_1_JN242251
+	erm(33)_2_AJ313523
+	Modified:
+	vga(C)_1_GQ205627 -> vga(D)_1_GQ205627
+	vga(C)_2_NC_013034 -> vga(C)_1_FN806792
+	cfrB_1_KR610408 -> cfr(B)_3_KR610408
+	Added:
+	erm(48)_1_LT223129
+	mph(F)_1_AM260957
+	erm(B)_23_Y00116
+	erm(B)_24_M11180
+	erm(46)_1_KM679362
+	lsa(E)_1_AF408195
+	erm(B)_22_X52632
+	lnu(P)_1_FJ589781
+	msr(E)_1_FR751518
+	erm(43)_1_HE650138
+	mph(E)_5_DQ839391
+	mef(C)_1_AB571865
+	lmr(B)_1_X62867
+	erm(47)_1_KU612222
+	erm(B)_26_AF080450
+	mph(G)_1_AB571865
+	lnu(G)_1_KX470419
+	vat(D)_2_AF368302
+	mef(A)_1_AJ971089
+	mef(A)_2_U83667
+	mef(A)_4_AF274302
+	mef(A)_5_AF227520
+	vga(A)LC_2_DQ823382
+	erm(44)v_1_LN623525
+	ere(B)_1_A15097
+	erm(44)_1_HG796218
+	sal(A)_1_KC693025
+	erm(45)_1_LN680996
+	erm(33)_1_AJ579365
+	vat(E)_6_AF242872
+	ere(A)_5_FN396877
+	lnu(B)_2_JQ861959
+	erm(R)_1_M11276
+	erm(B)_25_X72021
+	lnu(E)_1_KF287643
+	vat(G)_1_GQ205627
+	erm(C)_6_X82668
+	erm(F)_1_M14730
+	erm(33)_1_AJ579365
+	cfr(B)_1_KM359439
+	cfr(B)_2_KM359438
+	cfr(C)_2_CANB01000378
+	cmlB1_1_AM296481
+	fexB_1_JN201336
+	EstDL136_1_JN242251
 2018-04-13	Added:
-		aac(6')-Ib_2_M23634
-		aac(6')-Ib-11_1_AY136758
-		aac(6')-30-aac(6')-Ib'_1_AJ584652
-		aac(6')-Iaj_1_AB709942
-		aac(6')-Ian_1_AP014611
-		aac(6')-Iak_1_AB894482
-		aac(6')-Ib-Hangzhou_1_FJ503047
-		aac(6')-Ib-Suzhou_1_EU085533
-		aac(6')-Iid_1_AJ584700
-		aac(6')-Iih_1_AJ584701
-		aac(6')-Iz_2_AB971834
-		aac(6')-29b_1_AF263519
-		aac(6')-29a_1_AF263519
-		aac(6')-Iaa_1_NC_003197
-		aac(6')-Ih_2_KT778788
-		aac(6')-Ix_1_AF031332
-		aac(6')-Il_1_U13880
-		aac(6')-Ia_2_M86913
-		aac(6')-Iag_1_AB472901
-		aac(2')-IIa_1_AB669090
-		kamB_1_AJ629123
-		grmO_1_AY524043
-		fmrO_1_Q08325
-		grmB_1_M55521
-		kgmB_1_S60108
-		sgm_1_M87057
-		aph(3')-VI_2_APPJ01000012
-		aph(3')-IX_1_APPN01000061
-		aadA13_2_NC010643
-		aadA11_2_AJ567827
-		aadA10_2_AM087405
-		aadA7_2_AB114632
-		aadA2_1_NC010870
-		aadD_2_M19465
-		aph(2'')-Ib_2_AF207840
-		aph(7'')-Ia_1_X03615
-		aph(9)-Ia_2_CR628337
-		aph(6)-Ia_2_Y00459
-		aph(6)-Id_1_M28829
-		aph(6)-Id_3_AB109805
-		aph(6)-Id_4_CP000971
-		aph(6)-Id_5_18676889
-		aph(3'')-Ia_2_AP009493
-		aph(3'')-Ia_3_M37378
-		aph(3'')-Ib_1_M28829
-		aph(3'')-Ib_2_AF024602
-		aph(3'')-Ib_3_AF321550
-		aph(3'')-Ib_4_AF313472
-		aadE-Cc_1_CP013733
-		ant(2'')-Ia_2_JF826500
-		ant(2'')-Ia_3_X74412
-		ant(2'')-Ia_4_AF458082
-		ant(2'')-Ia_5_AY139594
-		ant(2'')-Ia_6_AJ871915
-		ant(2'')-Ia_7_DQ018384
-		ant(2'')-Ia_8_AY920928
-		ant(2'')-Ia_9_HM367610
-		ant(2'')-Ia_10_HM367617
-		ant(2'')-Ia_11_HM367620
-		ant(2'')-Ia_12_HQ880250
-		ant(2'')-Ia_13_DQ176450
-		ant(2'')-Ia_14_DQ266447
-		ant(2'')-Ia_15_EF205594
-		ant(2'')-Ia_16_HQ386848
-		ant(2'')-Ia_17_JTTZ01000034
-		ant(2'')-Ia_19_GQ466184
-		ant(2'')-Ia_20_AY139599
-		ant(2'')-Ia_1_X04555
-		aph(3')-VI_1_KC170992
-		aph(3')-XV_2_GQ626879
-		aph(3')-XV_3_EU165039
-		aph(3')-IIIa_1_AF330699
-		aph(3')-IIIa_2_AJ490186
-		aph(3')-IIIa_3_AB247327
-		aph(3')-Va_2_AB211959
-		aph(3')-Vb_2_AJ744850
-		aph(3')-IIa_2_V00618
-		aph(3')-IIb_2_CP006832
-		aph(3')-Ia_2_EU287476
-		aph(3')-Ia_3_EF015636
-		aph(3')-Ia_4_AF498082
-		aph(3')-Ia_5_AP004237
-		aph(3')-Ia_6_L05392
-		aph(3')-Ia_7_X62115
-		aph(3')-Ia_8_Y00452
-		aph(3')-Ia_9_EU722351
-		aph(3')-Ia_10_EU855787
-		aph(2'')-Ih_1_KF652096
-		aph(2'')-Ig_1_CP004067
-		aph(2'')-If_1_KF652097
-		aph(2'')-If_2_AY701528
-		aph(2'')-Ia_2_AP009486
-		aph(2'')-Ia_3_AJ536195
-		sul2_21_AB366440
-		sul1_38_BX248359
-		sul1_39_AY522923
-		sul1_36_X15024
-		sul1_37_AF188331
-		Modified:
-		grmA_1_M55520
-		aac(3)-Ib-aac(6')-Ib_1_AF355189 -> aac(3)-Ib-aac(6')-Ib'_1_AF355189
-		aac(6')-Il_1_Z54241 -> aac(6')-Ip_1_Z54241
-		aac(6')-31_1_AJ640197 -> aac(6')-31_1_AM283489
-		aac(6')-IIc_1_AF162771 -> aac(6')-IIc_1_NC_012555
-		aacA4_1_KM278199 -> aac(6')-Ib3_1_X60321
-		QnrB28_1_HM439643 -> qnrB28_1_HM439643
-		sul1_1_AY224185 -> sul1_2_U12338
-		sul1_3_EU855787
-		sul2_2_GQ421466 -> sul2_2_AY034138
-		sul1_35_AB281183 -> sul1_35_AB281182
-		Deleted:
-		aac(6')_1_AY553333
-		aac_1_AJ628983
-		aac(6')_2_DQ302723
-		aac(6')_3_EU912537
-		aac(6')-Id_1_X12618
-		aacA29_1_AY139599
-		aac(6')Ib-cr_3_EF210035
-		lsa(A)_2_AY58982
-		sul1_2_CP002151
+	aac(6')-Ib_2_M23634
+	aac(6')-Ib-11_1_AY136758
+	aac(6')-30-aac(6')-Ib'_1_AJ584652
+	aac(6')-Iaj_1_AB709942
+	aac(6')-Ian_1_AP014611
+	aac(6')-Iak_1_AB894482
+	aac(6')-Ib-Hangzhou_1_FJ503047
+	aac(6')-Ib-Suzhou_1_EU085533
+	aac(6')-Iid_1_AJ584700
+	aac(6')-Iih_1_AJ584701
+	aac(6')-Iz_2_AB971834
+	aac(6')-29b_1_AF263519
+	aac(6')-29a_1_AF263519
+	aac(6')-Iaa_1_NC_003197
+	aac(6')-Ih_2_KT778788
+	aac(6')-Ix_1_AF031332
+	aac(6')-Il_1_U13880
+	aac(6')-Ia_2_M86913
+	aac(6')-Iag_1_AB472901
+	aac(2')-IIa_1_AB669090
+	kamB_1_AJ629123
+	grmO_1_AY524043
+	fmrO_1_Q08325
+	grmB_1_M55521
+	kgmB_1_S60108
+	sgm_1_M87057
+	aph(3')-VI_2_APPJ01000012
+	aph(3')-IX_1_APPN01000061
+	aadA13_2_NC010643
+	aadA11_2_AJ567827
+	aadA10_2_AM087405
+	aadA7_2_AB114632
+	aadA2_1_NC010870
+	aadD_2_M19465
+	aph(2'')-Ib_2_AF207840
+	aph(7'')-Ia_1_X03615
+	aph(9)-Ia_2_CR628337
+	aph(6)-Ia_2_Y00459
+	aph(6)-Id_1_M28829
+	aph(6)-Id_3_AB109805
+	aph(6)-Id_4_CP000971
+	aph(6)-Id_5_18676889
+	aph(3'')-Ia_2_AP009493
+	aph(3'')-Ia_3_M37378
+	aph(3'')-Ib_1_M28829
+	aph(3'')-Ib_2_AF024602
+	aph(3'')-Ib_3_AF321550
+	aph(3'')-Ib_4_AF313472
+	aadE-Cc_1_CP013733
+	ant(2'')-Ia_2_JF826500
+	ant(2'')-Ia_3_X74412
+	ant(2'')-Ia_4_AF458082
+	ant(2'')-Ia_5_AY139594
+	ant(2'')-Ia_6_AJ871915
+	ant(2'')-Ia_7_DQ018384
+	ant(2'')-Ia_8_AY920928
+	ant(2'')-Ia_9_HM367610
+	ant(2'')-Ia_10_HM367617
+	ant(2'')-Ia_11_HM367620
+	ant(2'')-Ia_12_HQ880250
+	ant(2'')-Ia_13_DQ176450
+	ant(2'')-Ia_14_DQ266447
+	ant(2'')-Ia_15_EF205594
+	ant(2'')-Ia_16_HQ386848
+	ant(2'')-Ia_17_JTTZ01000034
+	ant(2'')-Ia_19_GQ466184
+	ant(2'')-Ia_20_AY139599
+	ant(2'')-Ia_1_X04555
+	aph(3')-VI_1_KC170992
+	aph(3')-XV_2_GQ626879
+	aph(3')-XV_3_EU165039
+	aph(3')-IIIa_1_AF330699
+	aph(3')-IIIa_2_AJ490186
+	aph(3')-IIIa_3_AB247327
+	aph(3')-Va_2_AB211959
+	aph(3')-Vb_2_AJ744850
+	aph(3')-IIa_2_V00618
+	aph(3')-IIb_2_CP006832
+	aph(3')-Ia_2_EU287476
+	aph(3')-Ia_3_EF015636
+	aph(3')-Ia_4_AF498082
+	aph(3')-Ia_5_AP004237
+	aph(3')-Ia_6_L05392
+	aph(3')-Ia_7_X62115
+	aph(3')-Ia_8_Y00452
+	aph(3')-Ia_9_EU722351
+	aph(3')-Ia_10_EU855787
+	aph(2'')-Ih_1_KF652096
+	aph(2'')-Ig_1_CP004067
+	aph(2'')-If_1_KF652097
+	aph(2'')-If_2_AY701528
+	aph(2'')-Ia_2_AP009486
+	aph(2'')-Ia_3_AJ536195
+	sul2_21_AB366440
+	sul1_38_BX248359
+	sul1_39_AY522923
+	sul1_36_X15024
+	sul1_37_AF188331
+	Modified:
+	grmA_1_M55520
+	aac(3)-Ib-aac(6')-Ib_1_AF355189 -> aac(3)-Ib-aac(6')-Ib'_1_AF355189
+	aac(6')-Il_1_Z54241 -> aac(6')-Ip_1_Z54241
+	aac(6')-31_1_AJ640197 -> aac(6')-31_1_AM283489
+	aac(6')-IIc_1_AF162771 -> aac(6')-IIc_1_NC_012555
+	aacA4_1_KM278199 -> aac(6')-Ib3_1_X60321
+	QnrB28_1_HM439643 -> qnrB28_1_HM439643
+	sul1_1_AY224185 -> sul1_2_U12338
+	sul1_3_EU855787
+	sul2_2_GQ421466 -> sul2_2_AY034138
+	sul1_35_AB281183 -> sul1_35_AB281182
+	Deleted:
+	aac(6')_1_AY553333
+	aac_1_AJ628983
+	aac(6')_2_DQ302723
+	aac(6')_3_EU912537
+	aac(6')-Id_1_X12618
+	aacA29_1_AY139599
+	aac(6')Ib-cr_3_EF210035
+	lsa(A)_2_AY58982
+	sul1_2_CP002151
 2018-03-20	Added:
-		mcr-4.2_2_MG026621
-		mcr-5.2_1_MG384740
-		mcr-7.1_1_MG267386
-		tet_1_M74049
-		tet(47)_1_KR857681
-		tet(48)_1_KR857682
-		tet(49)_1_KR857683
-		tet(50)_1_KR857684
-		tet(51)_1_KR857685
-		tet(52)_1_KR857686
-		tet(53)_1_KR857687
-		tet(54)_1_KR857688
-		tet(55)_1_KR857689
-		tet(O)_4_AIOQ01000025
-		tet(45)_1_JF837331
-		tetA(46)_1_HQ652506
-		tetB(46)_1_HQ652506
-		tet(57)_1_KP137702
-		tet(59)_1_KU736878
-		tetA(60)_1_KX000272
-		tetB(60)_1_KX000273
-		tet(A)_1_AJ313332
-		tet(E)_2_EF471995
-		tet(E)_1_Y19116
-		tet(C)_4_AY043298
-		tet(S)_4_AY534326
-		tet(O/W)_1_AM889118
-		tet(O/W)_2_AM889119
-		tet(O/W)_3_AM889120
-		tet(O/W)_4_AM889121
-		tet(O/W)_5_AM889122
-		tet(O/W)-2_1_AY485122
-		tet(O/W)-1_1_AY485126
-		tet(O/W/O)-3_1_EF065524
-		tet(O/W/O)-2_1_AY196920
-		tet(O/W/O)-1_1_AY196921
-		tet(O/W/32/O)_1_EF065523
-		tet(O/W/32/O)_2_FM164392
-		tet(O/W/32/O)_3_FR823304
-		tet(O/W/32/O)_4_FR824044
-		tet(O/W/32/O)_5_JQ740053
-		tet(O/W/32/O/W/O)_1_DQ525023
-		tet(O/W/32/O/W/O)_2_DQ679926
-		tet(O/32/O)_1_JQ740052
-		tet(0/32/0)_2_AJ295238
-		tet(0/32/0)_3_NZ_AUJS01000017
-		tet(0/32/0)_4_AINH01000038
-		tet(0/32/0)_5_NZ_AINJ01000054
-		tet(0/32/0)_6_AIOQ01000025
-		tet(0/32/0)_7_FP929050
-		tet(S/M)_1_HM367711
-		tet(S/M)_2_AY534326
-		tet(W/32/O)_1_AM710601
-		tet(W/32/O)_2_AM710602
-		tet(W/32/O)_3_AM710603
-		tet(W/32/O)_4_AM710604
-		tet(W/32/O)_5_AM710605
-		Deleted:
-		tetO_4_AIOQ01000025
-		ort(B)_2_AF061335
-		tet(40)_2_FJ158002
-		tet(G)_5_AF071555
-		tet(E)_2_EF471995
-		tetA(P)_2_HQ399624
-		Modified:
-		ort(B)_1_AF079900 -> otr(B)_1_AF079900
-		tet(33)_2_AY255627 -> tet(33)_1_AY255627
-		tet(33)_3_DQ390458 -> tet(33)_2_DQ390458
-		tet(40)_1_FJ158002
-		tet(40)_3_AM419751 -> tet(40)_2_AM419751
-		tcr_1_D38215 -> tcr3_1_D38215
-		tet(A)_6_AJ313332 -> tet(A)_6_AF534183
-		tet(G)_2_AF133139 -> tet(G)_1_AF133139
-		tet(G)_3_S52437 -> tet(G)_2_AF133140
-		tet(G)_4_AF133140 -> tet(G)_3_S52437
-		tet(E)_3_L06940 -> tet(E)_2_L06940
-		tet(E)_5_CP000645 -> tet(E)_3_CP000645
-		tet(D)_5_X65876 -> tet(D)_2_X65876
-		tet(C)_2_AY046276
-		tet(C)_9_AY046276 -> tet(C)_3_AF055345
-		tet(B)_3_AP000342 -> tet(B)_1_AP000342
-		tet(B)_4_AF326777 -> tet(B)_2_AF326777
-		tet(B)_5_AJ277653 -> tet(B)_3_AJ277653
-		tet(L)_4_M11036 -> tet(L)_3_M11036
-		tet(L)_5_D00006 -> tet(L)_4_D00006
-		tet(L)_6_X08034 -> tet(L)_5_X08034
-		tet(L)_7_D12567 -> tet(L)_6_D12567
-		tet(L)_8_X60828 -> tet(L)_7_X60828
-		tet(L)_9_AY081910 -> tet(L)_8_AY081910
-		tet(K)_4_U38428 -> tet(K)_1_U38656
-		tet(K)_5_J01764 -> tet(K)_2_J01764
-		tet(Q)_3_U73497
-		tet(Q)_4_Z21523
-		tetA(P)_3_L20800 -> tetA(P)_2_L20800
-		tetA(P)_4_AB001076 -> tetA(P)_3_AB001076
-		tet(Y)_5_AB089606 -> tet(Y)_2_AB089606
-		tet(W)_4_AJ427422 -> tet(W)_3_AJ427421
-		tet(W)_5_AJ427421 -> tet(W)_4_FN396364
-		tet(W)_6_FN396364 -> tet(W)_5_AJ427422
+	mcr-4.2_2_MG026621
+	mcr-5.2_1_MG384740
+	mcr-7.1_1_MG267386
+	tet_1_M74049
+	tet(47)_1_KR857681
+	tet(48)_1_KR857682
+	tet(49)_1_KR857683
+	tet(50)_1_KR857684
+	tet(51)_1_KR857685
+	tet(52)_1_KR857686
+	tet(53)_1_KR857687
+	tet(54)_1_KR857688
+	tet(55)_1_KR857689
+	tet(O)_4_AIOQ01000025
+	tet(45)_1_JF837331
+	tetA(46)_1_HQ652506
+	tetB(46)_1_HQ652506
+	tet(57)_1_KP137702
+	tet(59)_1_KU736878
+	tetA(60)_1_KX000272
+	tetB(60)_1_KX000273
+	tet(A)_1_AJ313332
+	tet(E)_2_EF471995
+	tet(E)_1_Y19116
+	tet(C)_4_AY043298
+	tet(S)_4_AY534326
+	tet(O/W)_1_AM889118
+	tet(O/W)_2_AM889119
+	tet(O/W)_3_AM889120
+	tet(O/W)_4_AM889121
+	tet(O/W)_5_AM889122
+	tet(O/W)-2_1_AY485122
+	tet(O/W)-1_1_AY485126
+	tet(O/W/O)-3_1_EF065524
+	tet(O/W/O)-2_1_AY196920
+	tet(O/W/O)-1_1_AY196921
+	tet(O/W/32/O)_1_EF065523
+	tet(O/W/32/O)_2_FM164392
+	tet(O/W/32/O)_3_FR823304
+	tet(O/W/32/O)_4_FR824044
+	tet(O/W/32/O)_5_JQ740053
+	tet(O/W/32/O/W/O)_1_DQ525023
+	tet(O/W/32/O/W/O)_2_DQ679926
+	tet(O/32/O)_1_JQ740052
+	tet(0/32/0)_2_AJ295238
+	tet(0/32/0)_3_NZ_AUJS01000017
+	tet(0/32/0)_4_AINH01000038
+	tet(0/32/0)_5_NZ_AINJ01000054
+	tet(0/32/0)_6_AIOQ01000025
+	tet(0/32/0)_7_FP929050
+	tet(S/M)_1_HM367711
+	tet(S/M)_2_AY534326
+	tet(W/32/O)_1_AM710601
+	tet(W/32/O)_2_AM710602
+	tet(W/32/O)_3_AM710603
+	tet(W/32/O)_4_AM710604
+	tet(W/32/O)_5_AM710605
+	Deleted:
+	tetO_4_AIOQ01000025
+	ort(B)_2_AF061335
+	tet(40)_2_FJ158002
+	tet(G)_5_AF071555
+	tet(E)_2_EF471995
+	tetA(P)_2_HQ399624
+	Modified:
+	ort(B)_1_AF079900 -> otr(B)_1_AF079900
+	tet(33)_2_AY255627 -> tet(33)_1_AY255627
+	tet(33)_3_DQ390458 -> tet(33)_2_DQ390458
+	tet(40)_1_FJ158002
+	tet(40)_3_AM419751 -> tet(40)_2_AM419751
+	tcr_1_D38215 -> tcr3_1_D38215
+	tet(A)_6_AJ313332 -> tet(A)_6_AF534183
+	tet(G)_2_AF133139 -> tet(G)_1_AF133139
+	tet(G)_3_S52437 -> tet(G)_2_AF133140
+	tet(G)_4_AF133140 -> tet(G)_3_S52437
+	tet(E)_3_L06940 -> tet(E)_2_L06940
+	tet(E)_5_CP000645 -> tet(E)_3_CP000645
+	tet(D)_5_X65876 -> tet(D)_2_X65876
+	tet(C)_2_AY046276
+	tet(C)_9_AY046276 -> tet(C)_3_AF055345
+	tet(B)_3_AP000342 -> tet(B)_1_AP000342
+	tet(B)_4_AF326777 -> tet(B)_2_AF326777
+	tet(B)_5_AJ277653 -> tet(B)_3_AJ277653
+	tet(L)_4_M11036 -> tet(L)_3_M11036
+	tet(L)_5_D00006 -> tet(L)_4_D00006
+	tet(L)_6_X08034 -> tet(L)_5_X08034
+	tet(L)_7_D12567 -> tet(L)_6_D12567
+	tet(L)_8_X60828 -> tet(L)_7_X60828
+	tet(L)_9_AY081910 -> tet(L)_8_AY081910
+	tet(K)_4_U38428 -> tet(K)_1_U38656
+	tet(K)_5_J01764 -> tet(K)_2_J01764
+	tet(Q)_3_U73497
+	tet(Q)_4_Z21523
+	tetA(P)_3_L20800 -> tetA(P)_2_L20800
+	tetA(P)_4_AB001076 -> tetA(P)_3_AB001076
+	tet(Y)_5_AB089606 -> tet(Y)_2_AB089606
+	tet(W)_4_AJ427422 -> tet(W)_3_AJ427421
+	tet(W)_5_AJ427421 -> tet(W)_4_FN396364
+	tet(W)_6_FN396364 -> tet(W)_5_AJ427422
 2018-02-16	Deleted:
-		mcr-3.6_1_MF598076
-		mcr-3.5_1_MF598079
-		mcr-3.4_1_NG055497
-		mcr-3.3_1_NG055492
-		mcr-3.2_1_NG055493
-		mcr-2.2_1_MF176240
-		mcr-1.10_1_MF176238
-		mcr-5_1_KY807921
-		mcr-4_1_MF543359
-		mcr-3_1_KY924928
-		mcr-1.9_1_KY685071
-		mcr-1.8_1_KY683842
-		Added:
-		mcr_1.8_1_KY683842
-		mcr-1.9_1_KY964067
-		mcr-1.10_1_MF176238
-		mcr-1.11_1_KY853650
-		mcr-1.12_1_LC337668
-		mcr-2.2_1_NG055496
-		mcr-3_1_NG055493
-		mcr-3_2_NG055497
-		mcr-3.1_KY924928
-		mcr-3.2_1_NG055523
-		mcr-3.4_1_NG055492
-		mcr-3.5_1_MF463699
-		mcr-3.10_1_MG214533
-		mcr-3.11_1_MG489958
-		mcr-4.1_1_MF543359
-		mcr-4.2_1_MG581979
-		mcr-4.3_1_ERS1801979
-		mcr-5_1_KY807921
-		mcr-6_1_MF176240
+	mcr-3.6_1_MF598076
+	mcr-3.5_1_MF598079
+	mcr-3.4_1_NG055497
+	mcr-3.3_1_NG055492
+	mcr-3.2_1_NG055493
+	mcr-2.2_1_MF176240
+	mcr-1.10_1_MF176238
+	mcr-5_1_KY807921
+	mcr-4_1_MF543359
+	mcr-3_1_KY924928
+	mcr-1.9_1_KY685071
+	mcr-1.8_1_KY683842
+	Added:
+	mcr_1.8_1_KY683842
+	mcr-1.9_1_KY964067
+	mcr-1.10_1_MF176238
+	mcr-1.11_1_KY853650
+	mcr-1.12_1_LC337668
+	mcr-2.2_1_NG055496
+	mcr-3_1_NG055493
+	mcr-3_2_NG055497
+	mcr-3.1_KY924928
+	mcr-3.2_1_NG055523
+	mcr-3.4_1_NG055492
+	mcr-3.5_1_MF463699
+	mcr-3.10_1_MG214533
+	mcr-3.11_1_MG489958
+	mcr-4.1_1_MF543359
+	mcr-4.2_1_MG581979
+	mcr-4.3_1_ERS1801979
+	mcr-5_1_KY807921
+	mcr-6_1_MF176240
 2018-02-16	Modified:
-		QnrA1_1_AY070235 -> qnrA1_1_AY070235
-		QnrA2_1_HQ449669 -> qnrA2_1_AY675584
-		QnrA3_1_DQ058661 -> qnrA3_1_DQ058661
-		QnrA4_1_DQ058662 -> qnrA4_1_DQ058662
-		QnrA5_1_DQ058663 -> qnrA5_1_DQ058663
-		QnrA6_1_DQ151889 -> qnrA7_1_GQ463707
-		QnrB1_1_DQ351241 -> qnrB1_1_DQ351241
-		QnrB2_1_HM125698 -> qnrB2_1_DQ351242
-		QnrB3_1_DQ303920 -> qnrB3_1_DQ303920
-		QnrB4_1_DQ303921 -> qnrB4_1_DQ303921
-		QnrB5_1_DQ303919 -> qnrB5_1_DQ303919
-		QnrB22_1_FJ981621 -> qnrB22_1_FJ981621
-		QnrB6_1_EF520349 -> qnrB6_1_EF520349
-		QnrB7_1_EU043311 -> qnrB7_1_EU043311
-		QnrB8_1_EU043312 -> qnrB8_1_EU043312
-		QnrB21_1_FJ611948 -> qnrB21_1_FJ611948
-		QnrB10_1_DQ631414 -> qnrB10_1_DQ631414
-		QnrB10_2_HM439644 -> qnrB10_2_HM439644
-		QnrB13_1_EU273755 -> qnrB13_1_EU273755
-		QnrB12_2_AM774474 -> qnrB12_2_AM774474
-		QnrB13_1_JN173050 -> qnrB13_1_JN173050
-		QnrB14_1_EU273757 -> qnrB14_1_EU273757
-		QnrB15_1_EU302865 -> qnrB15_1_EU302865
-		QnrB17_1_JN173051 -> qnrB17_1_JN173051
-		QnrB18_1_AM919399 -> qnrB18_1_AM919399
-		QnrB17_2_AM919398 -> qnrB17_2_AM919398
-		QnrB27_1_HM439641 -> qnrB27_1_HM439641
-		QnrB19_1_HM146784 -> qnrB19_1_EU432277
-		QnrB20_1_AB379831 -> qnrB20_1_AB379831
-		QnrB23_1_FJ981622 -> qnrB23_1_FJ981622
-		QnrB24_1_HM192542 -> qnrB24_1_HM192542
-		QnrB25_1_HQ172108 -> qnrB25_1_HQ172108
-		QnrB29_1_HM439649 -> qnrB29_1_HM439649
-		QnrB30_1_HM439650 -> qnrB30_1_HM439650
-		QnrB31_1_HQ418999 -> qnrB31_1_HQ418999
-		QnrB32_2_JN173054 -> qnrB32_2_JN173054
-		QnrB33_1_JN173055 -> qnrB33_1_JN173055
-		QnrB34_1_JN173056 -> qnrB34_1_JN173056
-		QnrB35_1_JN173057 -> qnrB35_1_JN173057
-		QnrB36_1_JN173058 -> qnrB36_1_JN173058
-		QnrB37_1_JN173059 -> qnrB37_1_JN173059
-		QnrB38_1_JN173060 -> qnrB38_1_JN173060
-		QnrB40_1_JN166689 -> qnrB40_1_JN166689
-		QnrB41_1_JN166690 -> qnrB41_1_JN166690
-		QnrC_1_EU917444 -> qnrC_1_EU917444
-		QnrS1_1_AB187515 -> qnrS1_1_AB187515
-		QnrS3_1_EU077611 -> qnrS3_1_EU077611
-		QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
-		QnrB42_1_JN680743 -> qnrB42_1_JN680743
-		QnrB44_1_JQ349153 -> qnrB44_1_JQ349153
-		QnrB45_1_JQ349152 -> qnrB45_1_JQ349152
-		QnrB46_1_JQ349154 -> qnrB46_1_JQ349154
-		QnrB47_1_JQ349155 -> qnrB47_1_JQ349155
-		QnrB48_1_JQ762640 -> qnrB48_1_JQ762640
-		QnrB49_1_JQ582718 -> qnrB49_1_JQ582718
-		QnrB50_1_JX440357 -> qnrB50_1_JX440357
-		QnrB51_1_JX440358 -> qnrB51_1_JX440358
-		QnrB52_1_EF488762 -> qnrB52_1_EF488762
-		QnrB53_1_HQ704413 -> qnrB53_1_HQ704413
-		QnrB54_1_HE820727 -> qnrB54_1_HE820727
-		QnrB56_1_JX259317 -> qnrB56_1_JX259317
-		QnrB57_1_JX259318 -> qnrB57_1_JX259318
-		QnrB58_1_JX259319 -> qnrB58_1_JX259319
-		QnrB59_1_JX259320 -> qnrB59_1_JX259320
-		QnrB60_1_AB734055 -> qnrB60_1_AB734055
-		QnrB61_1_AB734053 -> qnrB61_1_AB734053
-		QnrB62_1_JX987101 -> qnrB62_1_JX987101
-		QnrB64_1_KC580653 -> qnrB64_1_KC580653
-		QnrB65_1_KC580654 -> qnrB65_1_KC580654
-		QnrB66_1_KC580655 -> qnrB66_1_KC580655
-		QnrB67_1_KC580656 -> qnrB67_1_KC580656
-		QnrB68_1_KC580657 -> qnrB68_1_KC580657
-		QnrB69_1_KC580658 -> qnrB69_1_KC580658
-		QnrB70_1_KC580659 -> qnrB70_1_KC580659
-		QnrB71_1_KC580660 -> qnrB71_1_KC580660
-		QnrB72_1_KC741443 -> qnrB72_1_KC741443
-		QnrVC1_1_EU436855 -> qnrVC1_1_EU436855
-		QnrVC3_1_HM015626 -> qnrVC3_1_HM015626
-		QnrVC4_1_GQ891757 -> qnrVC4_1_GQ891757
-		QnrVC5_1_JN408080 -> qnrVC5_1_JN408080
-		QnrVC7_1_KM555152 -> qnrVC7_1_KM555152
-		QnrC_1_EU917444 -> qnrC_1_EU917444
-		QnrS1_1_AB187515 -> qnrS1_1_AB187515
-		QnrS3_1_EU077611 -> qnrS3_1_EU077611
-		QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
-		QnrS5_1_HQ631377 -> qnrS5_1_HQ631377
-		QnrS6_1_HQ631376 -> qnrS6_1_HQ631376
-		aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_2_EF636461
-		Deleted:
-		QnrAS_1_FM178379
-		QnrB6_3_EF523819
-		QnrB9_1_EF653270
-		QnrB11_1_EU136183
-		QnrB13_2_EU273756
-		QnrB27_2_HM439642
-		QnrB29_2_JN173053
-		QnrD_1_FJ228229
-		QnrS2_1_JF261185
-		norA_1_M97169
-		QnrB43_1_AFA52643
-		qnrE_1_KY073238
-		Added:
-		qnrA8_1_KY554783
-		qnrB6_2_EF523819
-		qnrB16_1_EU136183
-		qnrB26_1_HQ386846
-		qnrS2_1_DQ485530
-		qnrB39_1_ABWL02000005
-		qnrB43_1_JQ349151
-		qnrB55_1_KF730650
-		qnrB73_1_KF443075
-		qnrB74_1_KJ415247
-		qnrB75_1_KP207591
-		qnrB76_1_KM985469
-		qnrB77_1_KM985470
-		qnrB78_1_KM985471
-		qnrB79_1_KM985472
-		qnrB80_1_KM985473
-		qnrB81_1_KX372671
-		qnrB82_1_KX372672
-		qnrB88_1_KX118608
-		qnrVC6_1_KC202804
-		qnrD1_1_FJ228229
-		qnrD2_1_KF055448
-		qnrD3_1_KX130945
-		qnrS2_1_DQ485530
-		qnrS7_1_KF730651
-		qnrS8_1_KF730652
-		qnrS9_1_KF732714
-		qepA_1_FJ167861
-		qepA3_1_JQ064560
-		qepA4_1_KX580704
-		qnrE1_1_KY073238
+	QnrA1_1_AY070235 -> qnrA1_1_AY070235
+	QnrA2_1_HQ449669 -> qnrA2_1_AY675584
+	QnrA3_1_DQ058661 -> qnrA3_1_DQ058661
+	QnrA4_1_DQ058662 -> qnrA4_1_DQ058662
+	QnrA5_1_DQ058663 -> qnrA5_1_DQ058663
+	QnrA6_1_DQ151889 -> qnrA7_1_GQ463707
+	QnrB1_1_DQ351241 -> qnrB1_1_DQ351241
+	QnrB2_1_HM125698 -> qnrB2_1_DQ351242
+	QnrB3_1_DQ303920 -> qnrB3_1_DQ303920
+	QnrB4_1_DQ303921 -> qnrB4_1_DQ303921
+	QnrB5_1_DQ303919 -> qnrB5_1_DQ303919
+	QnrB22_1_FJ981621 -> qnrB22_1_FJ981621
+	QnrB6_1_EF520349 -> qnrB6_1_EF520349
+	QnrB7_1_EU043311 -> qnrB7_1_EU043311
+	QnrB8_1_EU043312 -> qnrB8_1_EU043312
+	QnrB21_1_FJ611948 -> qnrB21_1_FJ611948
+	QnrB10_1_DQ631414 -> qnrB10_1_DQ631414
+	QnrB10_2_HM439644 -> qnrB10_2_HM439644
+	QnrB13_1_EU273755 -> qnrB13_1_EU273755
+	QnrB12_2_AM774474 -> qnrB12_2_AM774474
+	QnrB13_1_JN173050 -> qnrB13_1_JN173050
+	QnrB14_1_EU273757 -> qnrB14_1_EU273757
+	QnrB15_1_EU302865 -> qnrB15_1_EU302865
+	QnrB17_1_JN173051 -> qnrB17_1_JN173051
+	QnrB18_1_AM919399 -> qnrB18_1_AM919399
+	QnrB17_2_AM919398 -> qnrB17_2_AM919398
+	QnrB27_1_HM439641 -> qnrB27_1_HM439641
+	QnrB19_1_HM146784 -> qnrB19_1_EU432277
+	QnrB20_1_AB379831 -> qnrB20_1_AB379831
+	QnrB23_1_FJ981622 -> qnrB23_1_FJ981622
+	QnrB24_1_HM192542 -> qnrB24_1_HM192542
+	QnrB25_1_HQ172108 -> qnrB25_1_HQ172108
+	QnrB29_1_HM439649 -> qnrB29_1_HM439649
+	QnrB30_1_HM439650 -> qnrB30_1_HM439650
+	QnrB31_1_HQ418999 -> qnrB31_1_HQ418999
+	QnrB32_2_JN173054 -> qnrB32_2_JN173054
+	QnrB33_1_JN173055 -> qnrB33_1_JN173055
+	QnrB34_1_JN173056 -> qnrB34_1_JN173056
+	QnrB35_1_JN173057 -> qnrB35_1_JN173057
+	QnrB36_1_JN173058 -> qnrB36_1_JN173058
+	QnrB37_1_JN173059 -> qnrB37_1_JN173059
+	QnrB38_1_JN173060 -> qnrB38_1_JN173060
+	QnrB40_1_JN166689 -> qnrB40_1_JN166689
+	QnrB41_1_JN166690 -> qnrB41_1_JN166690
+	QnrC_1_EU917444 -> qnrC_1_EU917444
+	QnrS1_1_AB187515 -> qnrS1_1_AB187515
+	QnrS3_1_EU077611 -> qnrS3_1_EU077611
+	QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
+	QnrB42_1_JN680743 -> qnrB42_1_JN680743
+	QnrB44_1_JQ349153 -> qnrB44_1_JQ349153
+	QnrB45_1_JQ349152 -> qnrB45_1_JQ349152
+	QnrB46_1_JQ349154 -> qnrB46_1_JQ349154
+	QnrB47_1_JQ349155 -> qnrB47_1_JQ349155
+	QnrB48_1_JQ762640 -> qnrB48_1_JQ762640
+	QnrB49_1_JQ582718 -> qnrB49_1_JQ582718
+	QnrB50_1_JX440357 -> qnrB50_1_JX440357
+	QnrB51_1_JX440358 -> qnrB51_1_JX440358
+	QnrB52_1_EF488762 -> qnrB52_1_EF488762
+	QnrB53_1_HQ704413 -> qnrB53_1_HQ704413
+	QnrB54_1_HE820727 -> qnrB54_1_HE820727
+	QnrB56_1_JX259317 -> qnrB56_1_JX259317
+	QnrB57_1_JX259318 -> qnrB57_1_JX259318
+	QnrB58_1_JX259319 -> qnrB58_1_JX259319
+	QnrB59_1_JX259320 -> qnrB59_1_JX259320
+	QnrB60_1_AB734055 -> qnrB60_1_AB734055
+	QnrB61_1_AB734053 -> qnrB61_1_AB734053
+	QnrB62_1_JX987101 -> qnrB62_1_JX987101
+	QnrB64_1_KC580653 -> qnrB64_1_KC580653
+	QnrB65_1_KC580654 -> qnrB65_1_KC580654
+	QnrB66_1_KC580655 -> qnrB66_1_KC580655
+	QnrB67_1_KC580656 -> qnrB67_1_KC580656
+	QnrB68_1_KC580657 -> qnrB68_1_KC580657
+	QnrB69_1_KC580658 -> qnrB69_1_KC580658
+	QnrB70_1_KC580659 -> qnrB70_1_KC580659
+	QnrB71_1_KC580660 -> qnrB71_1_KC580660
+	QnrB72_1_KC741443 -> qnrB72_1_KC741443
+	QnrVC1_1_EU436855 -> qnrVC1_1_EU436855
+	QnrVC3_1_HM015626 -> qnrVC3_1_HM015626
+	QnrVC4_1_GQ891757 -> qnrVC4_1_GQ891757
+	QnrVC5_1_JN408080 -> qnrVC5_1_JN408080
+	QnrVC7_1_KM555152 -> qnrVC7_1_KM555152
+	QnrC_1_EU917444 -> qnrC_1_EU917444
+	QnrS1_1_AB187515 -> qnrS1_1_AB187515
+	QnrS3_1_EU077611 -> qnrS3_1_EU077611
+	QnrS4_1_FJ418153 -> qnrS4_1_FJ418153
+	QnrS5_1_HQ631377 -> qnrS5_1_HQ631377
+	QnrS6_1_HQ631376 -> qnrS6_1_HQ631376
+	aac(6')Ib-cr_1_DQ303918 -> aac(6')-Ib-cr_2_EF636461
+	Deleted:
+	QnrAS_1_FM178379
+	QnrB6_3_EF523819
+	QnrB9_1_EF653270
+	QnrB11_1_EU136183
+	QnrB13_2_EU273756
+	QnrB27_2_HM439642
+	QnrB29_2_JN173053
+	QnrD_1_FJ228229
+	QnrS2_1_JF261185
+	norA_1_M97169
+	QnrB43_1_AFA52643
+	qnrE_1_KY073238
+	Added:
+	qnrA8_1_KY554783
+	qnrB6_2_EF523819
+	qnrB16_1_EU136183
+	qnrB26_1_HQ386846
+	qnrS2_1_DQ485530
+	qnrB39_1_ABWL02000005
+	qnrB43_1_JQ349151
+	qnrB55_1_KF730650
+	qnrB73_1_KF443075
+	qnrB74_1_KJ415247
+	qnrB75_1_KP207591
+	qnrB76_1_KM985469
+	qnrB77_1_KM985470
+	qnrB78_1_KM985471
+	qnrB79_1_KM985472
+	qnrB80_1_KM985473
+	qnrB81_1_KX372671
+	qnrB82_1_KX372672
+	qnrB88_1_KX118608
+	qnrVC6_1_KC202804
+	qnrD1_1_FJ228229
+	qnrD2_1_KF055448
+	qnrD3_1_KX130945
+	qnrS2_1_DQ485530
+	qnrS7_1_KF730651
+	qnrS8_1_KF730652
+	qnrS9_1_KF732714
+	qepA_1_FJ167861
+	qepA3_1_JQ064560
+	qepA4_1_KX580704
+	qnrE1_1_KY073238
 2018-02-13	Modified:
-		QnrB1_1_EF682133 -> QnrB1_1_DQ351241
+	QnrB1_1_EF682133 -> QnrB1_1_DQ351241
 2018-01-22	Added:
-		aac(3)-IIa_1_CP023555
-		aph(3')-VIj_1_KU922928
-		cfr(C)_1_KX686749
+	aac(3)-IIa_1_CP023555
+	aph(3')-VIj_1_KU922928
+	cfr(C)_1_KX686749
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	
+	


=====================================
debian-tests-data/db_resfinder/notes.txt
=====================================
@@ -558,6 +558,7 @@ blaCARB-48:Beta-lactam resistance:
 blaL:Beta-lactam resistance:
 blaCARB-47:Beta-lactam resistance:
 blaVMB-1:Beta-lactam resistance:
+blaVMB-2:Beta-lactam resistance:
 blaVHW-1:Beta-lactam resistance:
 blaVHH-1:Beta-lactam resistance:
 blaTER-2:Beta-lactam resistance:


=====================================
debian-tests-data/db_resfinder/phenotype_panels.txt
=====================================
@@ -42,7 +42,7 @@ Tetracycline
 :Panel: Escherichia coli
 Amikacin
 Ampicillin
-Ampicillin+clavulanic acid
+Ampicillin+Clavulanic acid
 Azithromycin
 Cefepime
 Cefotaxime
@@ -132,7 +132,7 @@ Gentamicin
 Linezolid
 Mupirocin
 Penicillin
-Quinupristin+dalfopristin
+Quinupristin+Dalfopristin
 Spiramycin
 Sulfamethoxazole
 Teicoplanin
@@ -150,9 +150,5 @@ Ethambutol
 Isoniazid
 Levofloxacin
 Linezolid
-Rifampin
+Rifampicin
 Streptomycin
-
-
-
-


=====================================
debian-tests-data/db_resfinder/phenotypes.txt
=====================================
The diff for this file was not included because it is too large.

=====================================
debian-tests-data/db_resfinder/trimethoprim.fsa
=====================================
@@ -311,16 +311,6 @@ GAAAATGCTTTGCAAGAACTATCTAAAATTACAGATCATGTATATATTTCGGGTGGGGGG
 CAAATCTATGAAAGCCTTATTGAAAAAGCAGATATAATTCATCTATCTACTATTCATGTT
 GAGGTTGAAGGTGATATTAAATTCCCTATATTACCTGAAGGTTTCAACTTGGTTTTTGAA
 CAGTTTTTTGTGTCTAATATAAATTATACATATCAAATTTGGAAAAAAGGCTAA
->dfrA33_1_FM957884
-ATGAACCCGGAATCGGTCCGCATTTATCTGGTCGCTGCCATGGGTGCCAATCGGGTTATT
-GGCAATGGCCCTGATATCCCTTGGAATATCCCTGGTGAGCAAAAGATTTTTCGCAGGCTC
-ACCGAGGGCAAAGTGGTCGTTATGGGCCGCAAGACGTTTGAGTCCATAGGCAAGCCCTTA
-CCAAACCGTCGCACAGTGGTGCTCTCGCGCCAAGCTAGTTATAGCGCTGCTGGTTGTGCA
-GTTGTTTCAACGCTGTCGCAGGCTATTGCCATCGCAGCCGAACACGGCAAGGAACTCTAC
-GTGGCCGGCGGAGCCGAGGTATATGCACTGGCACTACCTCGTGCCGATGGCGTCTTTCTA
-TCTGAGGTACATCAAACCTTCGAGGGTGACGCCTTCTTCCCAGCGCTCGACGCAGCAGAA
-TTCGACGTTGTCTCAGCCGAAACCGTTCAAGCCACAATCACGTACACGCACTCCGTCTAT
-GCACGTCGTAACGGCTAA
 >dfrB3_1_X72585
 ATGGACCAACACAACAATGGAGTCAGTACTCTAGTTGCTGGCCAGTTTGCGCTCCCATCG
 CACGCCACGTTTGGCCTGGGAGATCGCGTGCGCAAGAAATCTGGCGCCGCTTGGCAGGGT


=====================================
run_resfinder.py
=====================================
@@ -106,14 +106,19 @@ parser.add_argument("-ao", "--acq_overlap",
                     default=30)
 parser.add_argument("-l", "--min_cov",
                     dest="min_cov",
-                    help="Minimum (breadth-of) coverage of ResFinder",
+                    help="Minimum (breadth-of) coverage of ResFinder within the range 0-1.",
                     type=float,
                     default=0.60)
 parser.add_argument("-t", "--threshold",
                     dest="threshold",
-                    help="Threshold for identity of ResFinder",
+                    help="Threshold for identity of ResFinder within the range 0-1.",
                     type=float,
                     default=0.80)
+parser.add_argument("-nano", "--nanopore",
+                        action="store_true",
+                        dest="nanopore",
+                        help="If nanopore data is used",
+                        default=False)
 # Point resistance option
 parser.add_argument("-c", "--point",
                     action="store_true",
@@ -143,14 +148,14 @@ parser.add_argument("-u", "--unknown_mut",
                     default=False)
 parser.add_argument("-l_p", "--min_cov_point",
                     dest="min_cov_point",
-                    help="Minimum (breadth-of) coverage of Pointfinder. \
+                    help="Minimum (breadth-of) coverage of Pointfinder within the range 0-1. \
                           If None is selected, the minimum coverage of \
                           ResFinder will be used.",
                     type=float,
                     default=None)
 parser.add_argument("-t_p", "--threshold_point",
                     dest="threshold_point",
-                    help="Threshold for identity of Pointfinder. \
+                    help="Threshold for identity of Pointfinder within the range 0-1. \
                           If None is selected, the minimum coverage of \
                           ResFinder will be used.",
                     type=float,
@@ -173,6 +178,14 @@ if(args.point and not args.species):
              "species has been provided. Please provide species using the "
              "--species option.")
 
+# Check if coverage/identity parameters are valid
+if(args.min_cov > 1.0 or args.min_cov < 0.0):
+    sys.exit("ERROR: Minimum coverage above 1 or below 0 is not allowed. Please select a minimum coverage within the range 0-1 with the flag -l.")
+
+if(args.threshold > 1.0 or args.threshold < 0.0):
+    sys.exit("ERROR: Threshold for identity of ResFinder above 1 or below 0 is not allowed. Please select a threshold for identity within the range 0-1 with the flag -t.")
+
+
 # Create a "sample" name
 if(args.inputfasta):
     args.inputfasta = os.path.abspath(args.inputfasta)
@@ -377,18 +390,33 @@ if args.acquired is True:
 #        print("STD RESULT:\n{}".format(json.dumps(std_result)))
 
     else:
-        kma_run = acquired_finder.kma(inputfile_1=inputfastq_1,
-                                      inputfile_2=inputfastq_2,
-                                      out_path=out_res_kma,
-                                      db_path_kma=args.db_path_res_kma,
-                                      databases=acquired_finder.databases,
-                                      min_cov=min_cov,
-                                      threshold=args.threshold,
-                                      kma_path=kma,
-                                      sample_name="",
-                                      kma_cge=True,
-                                      kma_apm="p",
-                                      kma_1t1=True)
+        if args.nanopore:
+            kma_run = acquired_finder.kma(inputfile_1=inputfastq_1,
+                                          inputfile_2=inputfastq_2,
+                                          out_path=out_res_kma,
+                                          db_path_kma=args.db_path_res_kma,
+                                          databases=acquired_finder.databases,
+                                          min_cov=min_cov,
+                                          threshold=args.threshold,
+                                          kma_path=kma,
+                                          sample_name="",
+                                          kma_cge=True,
+                                          kma_apm="p",
+                                          kma_1t1=True,
+                                          kma_add_args='-ont -md 5')
+        else:
+            kma_run = acquired_finder.kma(inputfile_1=inputfastq_1,
+                                          inputfile_2=inputfastq_2,
+                                          out_path=out_res_kma,
+                                          db_path_kma=args.db_path_res_kma,
+                                          databases=acquired_finder.databases,
+                                          min_cov=min_cov,
+                                          threshold=args.threshold,
+                                          kma_path=kma,
+                                          sample_name="",
+                                          kma_cge=True,
+                                          kma_apm="p",
+                                          kma_1t1=True)
 
         # DEPRECATED
         # use std_result
@@ -426,11 +454,15 @@ if args.point is True and args.species:
         min_cov_point = args.min_cov
     else:
         min_cov_point = args.min_cov_point
+        if(args.min_cov_point > 1.0 or args.min_cov_point < 0.0):
+            sys.exit("ERROR: Minimum coverage above 1 or below 0 is not allowed. Please select a minimum coverage within the range 0-1 with the flag -l_p.")
 
     if args.threshold_point is None:
         threshold_point = args.threshold
     else:
         threshold_point = args.threshold_point
+        if(args.threshold_point > 1.0 or args.threshold_point < 0.0):
+            sys.exit("ERROR: Threshold for identity of PointFinder above 1 or below 0 is not allowed. Please select a threshold for identity within the range 0-1 with the flag -t_p.")
 
     finder = PointFinder(db_path=db_path_point, species=point_species,
                          gene_list=args.specific_gene)


=====================================
scripts/install_resfinder.sh
=====================================
@@ -37,5 +37,5 @@ cge/kma/kma_index -i db_pointfinder/neisseria_gonorrhoeae/*.fsa -o db_pointfinde
 cge/kma/kma_index -i db_pointfinder/salmonella/*.fsa -o db_pointfinder/salmonella/salmonella
 cge/kma/kma_index -i db_pointfinder/mycobacterium_tuberculosis/*.fsa -o db_pointfinder/mycobacterium_tuberculosis/mycobacterium_tuberculosis
 
-python3 test/functional_test.py
+python3 tests/functional_test.py
 



View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/commit/13eb75a2c1f1bdc77b7f5c72daad0146f961f070

-- 
View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/commit/13eb75a2c1f1bdc77b7f5c72daad0146f961f070
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