[med-svn] [Git][med-team/biomaj3-download][upstream] New upstream version 3.2.6
Olivier Sallou (@osallou)
gitlab at salsa.debian.org
Mon Feb 14 08:08:15 GMT 2022
Olivier Sallou pushed to branch upstream at Debian Med / biomaj3-download
Commits:
35cf9f7e by Olivier Sallou at 2022-02-14T08:06:12+00:00
New upstream version 3.2.6
- - - - -
4 changed files:
- CHANGES.txt
- biomaj_download/download/interface.py
- setup.py
- tests/biomaj_tests.py
Changes:
=====================================
CHANGES.txt
=====================================
@@ -1,3 +1,9 @@
+3.2.6:
+ Disabled test with tenacity, compat.make_retry_state removed from lib
+
+3.2.5:
+ Fix regex handling for **/*
+
3.2.4:
#39 directhttp download issues
biomaj sends file name instead of file dict, workaround this
=====================================
biomaj_download/download/interface.py
=====================================
@@ -3,7 +3,7 @@ import logging
import datetime
import time
import re
-import copy
+# import copy
import tenacity
from simpleeval import simple_eval, ast
@@ -264,14 +264,15 @@ class DownloadInterface(object):
# Check that it is an instance of stop_base
if not isinstance(stop_cond, tenacity.stop.stop_base):
raise ValueError(stop_condition + " doesn't yield a stop condition")
+ # Disabled test, compat.make_retry_state removed from lib
# Test that this is a correct stop condition by calling it.
# We use a deepcopy to be sure to not alter the object (even
# if it seems that calling a wait policy doesn't modify it).
- try:
- s = copy.deepcopy(stop_cond)
- s(tenacity.compat.make_retry_state(0, 0))
- except Exception:
- raise ValueError(stop_condition + " doesn't yield a stop condition")
+ # try:
+ # s = copy.deepcopy(stop_cond)
+ # s(tenacity.compat.make_retry_state(0, 0))
+ # except Exception:
+ # raise ValueError(stop_condition + " doesn't yield a stop condition")
except Exception as e:
raise ValueError("Error while parsing stop condition: %s" % e)
else:
@@ -290,14 +291,15 @@ class DownloadInterface(object):
# Check that it is an instance of wait_base
if not isinstance(wait_pol, tenacity.wait.wait_base):
raise ValueError(wait_policy + " doesn't yield a wait policy")
+ # Disabled test, compat.make_retry_state removed from lib
# Test that this is a correct wait policy by calling it.
# We use a deepcopy to be sure to not alter the object (even
# if it seems that calling a stop condition doesn't modify it).
- try:
- w = copy.deepcopy(wait_pol)
- w(tenacity.compat.make_retry_state(0, 0))
- except Exception:
- raise ValueError(wait_policy + " doesn't yield a wait policy")
+ # try:
+ # w = copy.deepcopy(wait_pol)
+ # w(tenacity.compat.make_retry_state(0, 0))
+ # except Exception:
+ # raise ValueError(wait_policy + " doesn't yield a wait policy")
except Exception as e:
raise ValueError("Error while parsing wait policy: %s" % e)
else:
@@ -377,19 +379,13 @@ class DownloadInterface(object):
rfile['name'] = prefix + '/' + rfile['name']
self._append_file_to_download(rfile)
self.logger.debug('Download:File:MatchRegExp:' + rfile['name'])
- return
+ # return
for direlt in dir_list:
subdir = direlt['name']
self.logger.debug('Download:File:Subdir:Check:' + subdir)
if pattern == '**/*':
(subfile_list, subdirs_list) = self.list(prefix + '/' + subdir + '/')
self.match([pattern], subfile_list, subdirs_list, prefix + '/' + subdir, True)
- for rfile in file_list:
- if pattern == '**/*' or re.match(pattern, rfile['name']):
- if prefix != '':
- rfile['name'] = prefix + '/' + rfile['name']
- self._append_file_to_download(rfile)
- self.logger.debug('Download:File:MatchRegExp:' + rfile['name'])
else:
if re.match(subdirs_pattern[0], subdir):
self.logger.debug('Download:File:Subdir:Match:' + subdir)
=====================================
setup.py
=====================================
@@ -22,7 +22,7 @@ config = {
'url': 'http://biomaj.genouest.org',
'download_url': 'http://biomaj.genouest.org',
'author_email': 'olivier.sallou at irisa.fr',
- 'version': '3.2.4',
+ 'version': '3.2.6',
'classifiers': [
# How mature is this project? Common values are
# 3 - Alpha
=====================================
tests/biomaj_tests.py
=====================================
@@ -190,8 +190,8 @@ class TestDownloadInterface(unittest.TestCase):
# Test some garbage
d = dict(stop_condition="stop_after_attempts") # no param
self.assertRaises(ValueError, downloader.set_options, d)
- d = dict(stop_condition="1 & 1") # not a stop_condition
- self.assertRaises(ValueError, downloader.set_options, d)
+ #d = dict(stop_condition="1 & 1") # not a stop_condition
+ #self.assertRaises(ValueError, downloader.set_options, d)
d = dict(stop_condition="stop_after_attempts(5) & 1") # not a stop_condition
self.assertRaises(ValueError, downloader.set_options, d)
# Test some garbage
@@ -199,8 +199,8 @@ class TestDownloadInterface(unittest.TestCase):
self.assertRaises(ValueError, downloader.set_options, d)
d = dict(wait_policy="I love python") # not a wait_condition
self.assertRaises(ValueError, downloader.set_options, d)
- d = dict(wait_policy="wait_random(5) + 3") # not a wait_condition
- self.assertRaises(ValueError, downloader.set_options, d)
+ #d = dict(wait_policy="wait_random(5) + 3") # not a wait_condition
+ #self.assertRaises(ValueError, downloader.set_options, d)
# Test operators
d = dict(stop_condition="stop_never | stop_after_attempt(5)",
wait_policy="wait_none + wait_random(1, 2)")
View it on GitLab: https://salsa.debian.org/med-team/biomaj3-download/-/commit/35cf9f7ee5e23f6037c9135c869b119b4c9e6af6
--
View it on GitLab: https://salsa.debian.org/med-team/biomaj3-download/-/commit/35cf9f7ee5e23f6037c9135c869b119b4c9e6af6
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