[med-svn] [Git][med-team/parsnp][master] 5 commits: Fix watchfile to detect new versions on github

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / parsnp


Commits:
3c65618e by Andreas Tille at 2022-02-17T15:13:19+01:00
Fix watchfile to detect new versions on github

- - - - -
032c9a74 by Andreas Tille at 2022-02-17T15:13:23+01:00
New upstream version 1.6.2+dfsg
- - - - -
82e1055a by Andreas Tille at 2022-02-17T15:13:23+01:00
routine-update: New upstream version

- - - - -
594679d6 by Andreas Tille at 2022-02-17T15:13:24+01:00
Update upstream source from tag 'upstream/1.6.2+dfsg'

Update to upstream version '1.6.2+dfsg'
with Debian dir 9f342d18a4a7a3ce4dac87c58c00f9566f598e1c
- - - - -
438fe8f7 by Andreas Tille at 2022-02-17T15:14:47+01:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- + .travis.yml
- debian/changelog
- debian/watch
- parsnp


Changes:

=====================================
.travis.yml
=====================================
@@ -0,0 +1,13 @@
+language: cpp
+compiler: 
+- gcc
+script: 
+- if [ $TRAVIS_OS_NAME == linux ]; then ./build_parsnp_linux.sh; fi 
+notifications:
+  email:
+    recipients:
+      - treangent at nbacc.net
+    on_success: change
+    on_failure: change
+os:
+- linux


=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+parsnp (1.6.2+dfsg-1) unstable; urgency=medium
+
+  * Fix watchfile to detect new versions on github
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Thu, 17 Feb 2022 15:13:38 +0100
+
 parsnp (1.6.1+dfsg-1) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/watch
=====================================
@@ -1,4 +1,4 @@
 version=4
 
 opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
-  https://github.com/marbl/parsnp/releases .*/archive/.*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+  https://github.com/marbl/parsnp/releases .*/.*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)


=====================================
parsnp
=====================================
@@ -14,7 +14,7 @@ import signal
 import inspect
 from multiprocessing import *
 
-__version__ = "1.6.1"
+__version__ = "1.6.2"
 reroot_tree = True #use --midpoint-reroot
 
 try:
@@ -1508,8 +1508,8 @@ Please verify recruited genomes are all strain of interest""")
     if not VERBOSE and os.path.exists("%s/tmp"%(outputDir)):
         shutil.rmtree("%s/tmp"%(outputDir))
 
-    if os.path.exists("%s/parsnp.snps.mblocks"%(outputDir)):
-        os.remove("%s/parsnp.snps.mblocks"%(outputDir))
+    # if os.path.exists("%s/parsnp.snps.mblocks"%(outputDir)):
+        # os.remove("%s/parsnp.snps.mblocks"%(outputDir))
     if os.path.exists("%s/parsnp.snps.mblocks.reduced"%(outputDir)):
         os.remove("%s/parsnp.snps.mblocks.reduced"%(outputDir))
 



View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/compare/41828f6e417da5b1df7db81cd87b2970f547914c...438fe8f7e6a08fbfbde951f3fa71281d90ddd78f

-- 
View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/compare/41828f6e417da5b1df7db81cd87b2970f547914c...438fe8f7e6a08fbfbde951f3fa71281d90ddd78f
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