[med-svn] [Git][med-team/python-tinyalign][upstream] New upstream version 0.2.1
Andreas Tille (@tille)
gitlab at salsa.debian.org
Thu Feb 17 15:32:51 GMT 2022
Andreas Tille pushed to branch upstream at Debian Med / python-tinyalign
Commits:
206c4f4e by Andreas Tille at 2022-02-17T16:30:53+01:00
New upstream version 0.2.1
- - - - -
5 changed files:
- + .github/workflows/ci.yml
- − .travis.yml
- README.md
- buildwheels.sh
- setup.py
Changes:
=====================================
.github/workflows/ci.yml
=====================================
@@ -0,0 +1,68 @@
+name: CI
+
+on: [push]
+
+jobs:
+ test:
+ timeout-minutes: 5
+ runs-on: ubuntu-latest
+ strategy:
+ matrix:
+ python-version: ["3.6", "3.7", "3.8", "3.9", "3.10"]
+ steps:
+ - uses: actions/checkout at v2
+ - name: Set up Python ${{ matrix.python-version }}
+ uses: actions/setup-python at v2
+ with:
+ python-version: ${{ matrix.python-version }}
+ - name: Install dependencies
+ run: python -m pip install pytest Cython
+ - name: Install
+ run: python -m pip install -e .
+ - name: Test
+ run: python -m pytest
+
+ deploy:
+ timeout-minutes: 10
+ runs-on: ubuntu-latest
+ needs: [test]
+ if: startsWith(github.ref, 'refs/tags')
+ steps:
+ - uses: actions/checkout at v2
+ with:
+ fetch-depth: 0 # required for setuptools_scm
+ - name: Set up Python
+ uses: actions/setup-python at v2
+ with:
+ python-version: 3.7
+ - name: Build wheels
+ uses: joerick/cibuildwheel at v2.2.2
+ with:
+ output-dir: dist/
+ env:
+ CIBW_BUILD: "cp3*-*"
+ CIBW_SKIP: "*-manylinux_i686 *musllinux*"
+ # CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
+ CIBW_ENVIRONMENT: "CFLAGS=-g0"
+ CIBW_TEST_REQUIRES: "pytest"
+ CIBW_TEST_COMMAND: |
+ cd {project}
+ pytest
+ - name: Make sdist
+ run: |
+ python -m pip install build
+ python -m build --sdist
+ ls -l dist/
+ - name: Publish dev release to test PyPI
+ if: contains(github.ref, '.dev')
+ uses: pypa/gh-action-pypi-publish at v1.4.2
+ with:
+ user: __token__
+ password: ${{ secrets.test_pypi_password }}
+ repository_url: https://test.pypi.org/legacy/
+ - name: Publish to PyPI
+ if: "!contains(github.ref, '.dev')"
+ uses: pypa/gh-action-pypi-publish at v1.4.2
+ with:
+ user: __token__
+ password: ${{ secrets.pypi_password }}
=====================================
.travis.yml deleted
=====================================
@@ -1,41 +0,0 @@
-language: python
-
-dist: xenial
-
-cache:
- directories:
- - $HOME/.cache/pip
-
-python:
- - "3.6"
- - "3.7"
- - "3.8-dev"
-
-install:
- - pip install .
-
-script:
- - python setup.py --version # Detect encoding problems
- - python -m pytest
-
-env:
- global:
- - TWINE_USERNAME=marcelm
-
-jobs:
- include:
- - stage: deploy
- services:
- - docker
- python: "3.6"
- install: python3 -m pip install Cython setuptools_scm twine
- if: tag IS present
- script:
- - |
- python3 setup.py sdist &&
- ./buildwheels.sh &&
- ls -l dist/ &&
- python3 -m twine upload dist/*
-
- allowed_failures:
- - python: "3.8-dev"
=====================================
README.md
=====================================
@@ -1,4 +1,6 @@
-[](https://travis-ci.org/marcelm/tinyalign)
+[](https://github.com/marcelm/tinyalign/actions/workflows/ci.yml)
+[](https://pypi.python.org/pypi/tinyalign)
+
# tinyalign
=====================================
buildwheels.sh
=====================================
@@ -1,24 +1,30 @@
#!/bin/bash
#
-# Build manylinux1 wheels. Based on the example at
+# Build manylinux wheels. Based on the example at
# <https://github.com/pypa/python-manylinux-demo>
#
-# Run this within the repository root:
-# docker run --rm -v $(pwd):/io quay.io/pypa/manylinux1_x86_64 /io/buildwheels.sh
+# It is best to run this in a fresh clone of the repository!
#
-# The wheels will be put into the wheelhouse/ subdirectory.
+# Run this within the repository root:
+# ./buildwheels.sh
#
-# For interactive tests:
-# docker run -it -v $(pwd):/io quay.io/pypa/manylinux1_x86_64 /bin/bash
+# The wheels will be put into the dist/ subdirectory.
set -xeuo pipefail
+manylinux=quay.io/pypa/manylinux2010_x86_64
+
# For convenience, if this script is called from outside of a docker container,
# it starts a container and runs itself inside of it.
if ! grep -q docker /proc/1/cgroup; then
# We are not inside a container
- docker pull quay.io/pypa/manylinux1_x86_64
- exec docker run --rm -v $(pwd):/io quay.io/pypa/manylinux1_x86_64 /io/$0
+ docker pull ${manylinux}
+ exec docker run --rm -v $(pwd):/io ${manylinux} /io/$0
+fi
+
+if ! test -d /io/dist; then
+ mkdir /io/dist
+ chown --reference=/io/setup.py /io/dist
fi
# Strip binaries (copied from multibuild)
@@ -26,13 +32,14 @@ STRIP_FLAGS=${STRIP_FLAGS:-"-Wl,-strip-all"}
export CFLAGS="${CFLAGS:-$STRIP_FLAGS}"
export CXXFLAGS="${CXXFLAGS:-$STRIP_FLAGS}"
-for PYBIN in /opt/python/cp3[67]-*/bin; do
- ${PYBIN}/pip wheel /io/ -w wheelhouse/
+for PYBIN in /opt/python/cp3[678]-*/bin; do
+ ${PYBIN}/pip wheel --no-deps /io/ -w wheelhouse/
done
+ls wheelhouse/
# Bundle external shared libraries into the wheels
-for whl in wheelhouse/tinyalign-*.whl; do
- auditwheel repair "$whl" -w repaired/
+for whl in wheelhouse/*.whl; do
+ auditwheel repair "$whl" --plat manylinux1_x86_64 -w repaired/
done
# Created files are owned by root, so fix permissions.
=====================================
setup.py
=====================================
@@ -4,10 +4,6 @@ from setuptools import setup, Extension, find_packages
from distutils.command.sdist import sdist as _sdist
from distutils.command.build_ext import build_ext as _build_ext
-if sys.version_info[:2] < (3, 4):
- sys.stdout.write("Python 3.4 or later is required\n")
- sys.exit(1)
-
def no_cythonize(extensions, **_ignore):
"""Change .pyx to .c or .cpp (copied from Cython documentation)"""
@@ -73,6 +69,7 @@ setup(
package_dir={"": "src"},
ext_modules=extensions,
cmdclass={"build_ext": BuildExt, "sdist": SDist},
+ python_requires='>=3.6',
classifiers=[
"Development Status :: 3 - Alpha",
"Intended Audience :: Science/Research",
View it on GitLab: https://salsa.debian.org/med-team/python-tinyalign/-/commit/206c4f4eec1aaa9569fcd2e32aae22d877ffd0c3
--
View it on GitLab: https://salsa.debian.org/med-team/python-tinyalign/-/commit/206c4f4eec1aaa9569fcd2e32aae22d877ffd0c3
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