[med-svn] [Git][med-team/discosnp][master] 5 commits: New upstream version 2.6.2

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / discosnp


Commits:
c9253acc by Andreas Tille at 2022-02-17T16:58:28+01:00
New upstream version 2.6.2
- - - - -
664dad23 by Andreas Tille at 2022-02-17T16:58:28+01:00
routine-update: New upstream version

- - - - -
102fa6b8 by Andreas Tille at 2022-02-17T16:58:32+01:00
Update upstream source from tag 'upstream/2.6.2'

Update to upstream version '2.6.2'
with Debian dir 7410a55b12b471966c0fa13224c26928b2f2259e
- - - - -
b71a55c3 by Andreas Tille at 2022-02-17T16:58:40+01:00
Remove unnecessary Team Upload line in changelog.

Changes-By: lintian-brush

- - - - -
f77b9659 by Andreas Tille at 2022-02-17T16:59:57+01:00
routine-update: Ready to upload to unstable

- - - - -


2 changed files:

- debian/changelog
- scripts/ClassVCF_creator.py


Changes:

=====================================
debian/changelog
=====================================
@@ -1,9 +1,12 @@
-discosnp (1:2.6.1-2) UNRELEASED; urgency=medium
+discosnp (1:2.6.2-1) unstable; urgency=medium
 
-  * Team upload.
+  [ Étienne Mollier ]
   * Adjust use_debian_packaged_gatb-core.patch to not include GatbCore
 
- -- Étienne Mollier <emollier at debian.org>  Tue, 07 Dec 2021 22:38:17 +0100
+  [ Andreas Tille ]
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Thu, 17 Feb 2022 16:58:46 +0100
 
 discosnp (1:2.6.1-1) unstable; urgency=medium
 


=====================================
scripts/ClassVCF_creator.py
=====================================
@@ -1184,7 +1184,7 @@ class SNPSCLOSE(VARIANT):
                         table[line][2]=str(self.variantID)+"_"+str(subIDs[line])
                         table[line][5]="."
                         table[line][6]=VCFObject.filterField
-                        table[line][7]=f"Ty{VCFObject.variantType};Rk={self.rank};UL={self.len_unitig_left};UR={self.len_unitig_right};CL={self.len_contig_left};CR={self.len_contig_right};Genome={nucleoRef};Sd={VCFObject.reverse}"
+                        table[line][7]=f"Ty={VCFObject.variantType};Rk={self.rank};UL={self.len_unitig_left};UR={self.len_unitig_right};CL={self.len_contig_left};CR={self.len_contig_right};Genome={nucleoRef};Sd={VCFObject.reverse}"
                         if VCFObject.filterField=="MULTIPLE" and VCFObject.XA:
                                 table[line][7]+=f";XA={VCFObject.XA}"
                         #TODO: eviter ces "replace"



View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/compare/8732561a8097d9628b6a22ba497d1a1ca497d355...f77b965919257df8dd0a49677fa534c52343a48b

-- 
View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/compare/8732561a8097d9628b6a22ba497d1a1ca497d355...f77b965919257df8dd0a49677fa534c52343a48b
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