[med-svn] [Git][med-team/discosnp][upstream] New upstream version 2.6.2

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / discosnp


Commits:
c9253acc by Andreas Tille at 2022-02-17T16:58:28+01:00
New upstream version 2.6.2
- - - - -


1 changed file:

- scripts/ClassVCF_creator.py


Changes:

=====================================
scripts/ClassVCF_creator.py
=====================================
@@ -1184,7 +1184,7 @@ class SNPSCLOSE(VARIANT):
                         table[line][2]=str(self.variantID)+"_"+str(subIDs[line])
                         table[line][5]="."
                         table[line][6]=VCFObject.filterField
-                        table[line][7]=f"Ty{VCFObject.variantType};Rk={self.rank};UL={self.len_unitig_left};UR={self.len_unitig_right};CL={self.len_contig_left};CR={self.len_contig_right};Genome={nucleoRef};Sd={VCFObject.reverse}"
+                        table[line][7]=f"Ty={VCFObject.variantType};Rk={self.rank};UL={self.len_unitig_left};UR={self.len_unitig_right};CL={self.len_contig_left};CR={self.len_contig_right};Genome={nucleoRef};Sd={VCFObject.reverse}"
                         if VCFObject.filterField=="MULTIPLE" and VCFObject.XA:
                                 table[line][7]+=f";XA={VCFObject.XA}"
                         #TODO: eviter ces "replace"



View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/commit/c9253accfb6be207fe4c87e8afaea3ef7df500e2

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View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/commit/c9253accfb6be207fe4c87e8afaea3ef7df500e2
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