Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
69ed304a by Andreas Tille at 2022-02-18T13:42:35+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,46 +1,46 @@
-Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
+Last-Update: Fri, 18 Feb 2022 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {covid-19,imaging} |
- orthanc | 99 | {imaging,covid-19,practice} |
- orthanc-wsi | 51 | {practice,laboratory,covid-19,imaging,his,oncology} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 100 | {practice,imaging,covid-19} |
+ orthanc-wsi | 52 | {imaging,oncology,practice,laboratory,covid-19,his} |
htsjdk | 26 | {bio-dev} |
- amide | 25 | {imaging} |
dicomscope | 25 | {imaging} |
+ amide | 24 | {imaging} |
dicom3tools | 23 | {imaging} |
- dcm2niix | 22 | {imaging} |
+ dcm2niix | 21 | {imaging} |
orthanc-webviewer | 18 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
- ngs-sdk | 15 | {bio-dev} |
- gdcm | 12 | {covid-19,imaging} |
+ ngs-sdk | 14 | {bio-dev} |
gdcm | 12 | {imaging-dev} |
+ gdcm | 12 | {covid-19,imaging} |
+ invesalius | 12 | {imaging} |
nifticlib | 11 | {imaging} |
- invesalius | 10 | {imaging} |
lagan | 10 | {bio} |
minc-tools | 10 | {imaging} |
mrtrix3 | 10 | {imaging} |
- adun.app | 9 | {bio} |
dicomnifti | 9 | {imaging} |
nifticlib | 9 | {imaging-dev} |
orthanc-postgresql | 9 | {imaging} |
pixelmed | 9 | {imaging} |
+ adun.app | 8 | {bio} |
libminc | 8 | {imaging-dev} |
- orthanc-dicomweb | 8 | {imaging,covid-19} |
+ orthanc-dicomweb | 8 | {covid-19,imaging} |
librg-utils-perl | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
mia | 6 | {imaging} |
nifti2dicom | 6 | {imaging} |
openslide | 6 | {imaging} |
openslide | 6 | {imaging-dev} |
- orthanc-mysql | 6 | {imaging} |
plastimatch | 6 | {imaging} |
- treeview | 6 | {bio-phylogeny,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
biojava-live | 5 | {bio-dev} |
jebl2 | 5 | {bio-dev} |
ngs-sdk | 5 | {bio-dev} |
nipype | 5 | {imaging-dev,imaging} |
- bio-tradis | 4 | {bio,bio-dev} |
+ orthanc-mysql | 5 | {imaging} |
+ bio-tradis | 4 | {bio-dev,bio} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
libsbml | 4 | {bio-dev} |
@@ -48,7 +48,8 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
obitools | 4 | {bio} |
orthanc-gdcm | 4 | {imaging} |
orthanc-python | 4 | {covid-19} |
- salmon | 4 | {bio,covid-19} |
+ oscar | 4 | {practice,data,tools} |
+ salmon | 4 | {covid-19,bio} |
canu | 3 | {bio} |
dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
@@ -58,9 +59,7 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
libdivsufsort | 3 | {bio-dev} |
melting | 3 | {bio,cloud} |
mhap | 3 | {bio-ngs,bio} |
- oscar | 3 | {data,tools,practice} |
phyutility | 3 | {bio,cloud} |
- piler | 3 | {bio} |
rdp-alignment | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
@@ -74,10 +73,10 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
clonalframeml | 2 | {covid-19,bio} |
clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
- dextractor | 2 | {bio,covid-19} |
+ dextractor | 2 | {covid-19,bio} |
embassy-domainatrix | 2 | {bio,cloud} |
- embassy-domalign | 2 | {cloud,bio} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {bio,cloud} |
+ embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
@@ -86,9 +85,10 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
+ piler | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
- pplacer | 2 | {bio,bio-phylogeny,covid-19} |
+ pplacer | 2 | {bio-phylogeny,covid-19,bio} |
proalign | 2 | {bio,bio-phylogeny} |
pymia | 2 | {imaging-dev} |
python-wdlparse | 2 | {bio-dev} |
@@ -97,11 +97,11 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
rtax | 2 | {cloud,bio} |
sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
- spread-phy | 2 | {bio-phylogeny,bio} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
stacks | 2 | {bio} |
tracetuner | 2 | {bio} |
anfo | 1 | {cloud,bio} |
- arden | 1 | {bio,cloud} |
+ arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
cmtk | 1 | {imaging} |
@@ -120,7 +120,7 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
- pigx-rnaseq | 1 | {bio,covid-19} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
@@ -133,11 +133,11 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
suitename | 1 | {bio} |
surankco | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
tvc | 1 | {bio} |
zalign | 1 | {cloud,bio} |
- acedb | 0 | {cloud,bio} |
+ acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -164,7 +164,7 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
libctapimkt | 0 | {practice} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -180,30 +180,31 @@ Last-Update: Fri, 18 Feb 2022 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
- plasmidid | 0 | {covid-19,bio} |
+ plasmidid | 0 | {bio,covid-19} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
tipp | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
- vienna-rna | 0 | {covid-19,bio} |
+ varscan | 0 | {covid-19,bio} |
+ vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
mssstest | -1 | {tools} |
-(233 rows)
+ rockhopper | -1 | {bio} |
+(234 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/69ed304afc6bc4f5bbe9049bfb6ba410d4b0a3f8
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/69ed304afc6bc4f5bbe9049bfb6ba410d4b0a3f8
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