[med-svn] [Git][med-team/picard-tools][upstream] New upstream version 2.26.10+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / picard-tools


Commits:
f3290b0a by Pierre Gruet at 2022-02-18T14:22:54+01:00
New upstream version 2.26.10+dfsg
- - - - -


2 changed files:

- build.gradle
- src/main/java/picard/vcf/GatherVcfs.java


Changes:

=====================================
build.gradle
=====================================
@@ -91,7 +91,9 @@ dependencies {
     compile 'org.apache.commons:commons-collections4:4.3'
     compile 'commons-lang:commons-lang:2.6'
     compile 'com.github.samtools:htsjdk:' + htsjdkVersion
-    compile 'org.broadinstitute:barclay:3.0.0'
+    compile 'org.broadinstitute:barclay:4.0.2'
+    compile 'org.apache.logging.log4j:log4j-api:2.17.1'
+    compile 'org.apache.logging.log4j:log4j-core:2.17.1'
     compileOnly(googleNio) {
         transitive = false
     }


=====================================
src/main/java/picard/vcf/GatherVcfs.java
=====================================
@@ -31,7 +31,7 @@ import java.util.stream.Collectors;
 
 /**
  * Simple little class that combines multiple VCFs that have exactly the same set of samples
- * and totally discrete sets of loci.
+ * and nonoverlapping sets of loci.
  *
  * @author Tim Fennell
  */



View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/f3290b0a2acbfd8c8f8845b02007284fe7274f0e

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View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/f3290b0a2acbfd8c8f8845b02007284fe7274f0e
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