Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e3345fe8 by Andreas Tille at 2022-02-19T13:42:17+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,44 +1,44 @@
-Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
+Last-Update: Sat, 19 Feb 2022 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 100 | {practice,imaging,covid-19} |
- orthanc-wsi | 52 | {imaging,oncology,practice,laboratory,covid-19,his} |
- htsjdk | 26 | {bio-dev} |
- dicomscope | 25 | {imaging} |
- amide | 24 | {imaging} |
+ dcmtk | 185 | {covid-19,imaging} |
+ orthanc | 101 | {practice,covid-19,imaging} |
+ orthanc-wsi | 51 | {imaging,covid-19,his,oncology,laboratory,practice} |
+ dicomscope | 28 | {imaging} |
+ htsjdk | 25 | {bio-dev} |
+ amide | 23 | {imaging} |
dicom3tools | 23 | {imaging} |
dcm2niix | 21 | {imaging} |
orthanc-webviewer | 18 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
ngs-sdk | 14 | {bio-dev} |
+ gdcm | 13 | {covid-19,imaging} |
gdcm | 12 | {imaging-dev} |
- gdcm | 12 | {covid-19,imaging} |
invesalius | 12 | {imaging} |
nifticlib | 11 | {imaging} |
lagan | 10 | {bio} |
minc-tools | 10 | {imaging} |
mrtrix3 | 10 | {imaging} |
+ nifticlib | 10 | {imaging-dev} |
dicomnifti | 9 | {imaging} |
- nifticlib | 9 | {imaging-dev} |
+ libminc | 9 | {imaging-dev} |
orthanc-postgresql | 9 | {imaging} |
pixelmed | 9 | {imaging} |
adun.app | 8 | {bio} |
- libminc | 8 | {imaging-dev} |
orthanc-dicomweb | 8 | {covid-19,imaging} |
librg-utils-perl | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
mia | 6 | {imaging} |
nifti2dicom | 6 | {imaging} |
- openslide | 6 | {imaging} |
openslide | 6 | {imaging-dev} |
+ openslide | 6 | {imaging} |
plastimatch | 6 | {imaging} |
treeview | 6 | {bio,bio-phylogeny} |
biojava-live | 5 | {bio-dev} |
jebl2 | 5 | {bio-dev} |
ngs-sdk | 5 | {bio-dev} |
- nipype | 5 | {imaging-dev,imaging} |
+ nipype | 5 | {imaging,imaging-dev} |
orthanc-mysql | 5 | {imaging} |
bio-tradis | 4 | {bio-dev,bio} |
getdata | 4 | {bio} |
@@ -49,39 +49,40 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
orthanc-gdcm | 4 | {imaging} |
orthanc-python | 4 | {covid-19} |
oscar | 4 | {practice,data,tools} |
- salmon | 4 | {covid-19,bio} |
+ salmon | 4 | {bio,covid-19} |
canu | 3 | {bio} |
dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
jellyfish1 | 3 | {bio} |
king | 3 | {typesetting,imaging} |
lamarc | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
+ libncl | 3 | {bio} |
melting | 3 | {bio,cloud} |
mhap | 3 | {bio-ngs,bio} |
- phyutility | 3 | {bio,cloud} |
+ phyutility | 3 | {cloud,bio} |
rdp-alignment | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
bart-view | 2 | {imaging} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
+ beast-mcmc | 2 | {bio,bio-phylogeny} |
biomaj3-cli | 2 | {cloud} |
bitseq | 2 | {bio} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
- cat-bat | 2 | {bio,covid-19} |
+ cat-bat | 2 | {covid-19,bio} |
clonalframeml | 2 | {covid-19,bio} |
clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
- dextractor | 2 | {covid-19,bio} |
+ dextractor | 2 | {bio,covid-19} |
embassy-domainatrix | 2 | {bio,cloud} |
embassy-domalign | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {bio,cloud} |
+ embassy-domsearch | 2 | {cloud,bio} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
+ intake | 2 | {bio,bio-dev} |
ipig | 2 | {bio} |
- libncl | 2 | {bio} |
+ libdivsufsort | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
@@ -94,13 +95,13 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
python-wdlparse | 2 | {bio-dev} |
rambo-k | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- sibsim4 | 2 | {cloud,bio} |
+ rtax | 2 | {bio,cloud} |
+ sibsim4 | 2 | {bio,cloud} |
sift | 2 | {bio} |
- spread-phy | 2 | {bio,bio-phylogeny} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
stacks | 2 | {bio} |
tracetuner | 2 | {bio} |
- anfo | 1 | {cloud,bio} |
+ anfo | 1 | {bio,cloud} |
arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
@@ -108,8 +109,7 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
cutesv | 1 | {bio} |
emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- htscodecs | 1 | {covid-19,bio-dev} |
- intake | 1 | {bio,bio-dev} |
+ htscodecs | 1 | {bio-dev,covid-19} |
jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
@@ -119,8 +119,7 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
microbegps | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- pbcopper | 1 | {bio-dev} |
- pigx-rnaseq | 1 | {covid-19,bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
@@ -132,19 +131,19 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
staden | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {covid-19,bio} |
+ thesias | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
tvc | 1 | {bio} |
zalign | 1 | {cloud,bio} |
- acedb | 0 | {bio,cloud} |
+ acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- cufflinks | 0 | {bio,cloud} |
+ cufflinks | 0 | {cloud,bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emperor | 0 | {bio} |
@@ -164,9 +163,9 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
libctapimkt | 0 | {practice} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -180,31 +179,33 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
+ pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
tipp | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
+ megan-ce | -1 | {bio} |
mssstest | -1 | {tools} |
rockhopper | -1 | {bio} |
-(234 rows)
+(235 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e3345fe893bb05008319506bd53938a499c8c250
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e3345fe893bb05008319506bd53938a499c8c250
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