[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sat Feb 19 13:42:21 GMT 2022


Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
e3345fe8 by Andreas Tille at 2022-02-19T13:42:17+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,44 +1,44 @@
-Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
+Last-Update: Sat, 19 Feb 2022 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    179 | {imaging,covid-19}                                  | 
- orthanc                       |    100 | {practice,imaging,covid-19}                         | 
- orthanc-wsi                   |     52 | {imaging,oncology,practice,laboratory,covid-19,his} | 
- htsjdk                        |     26 | {bio-dev}                                           | 
- dicomscope                    |     25 | {imaging}                                           | 
- amide                         |     24 | {imaging}                                           | 
+ dcmtk                         |    185 | {covid-19,imaging}                                  | 
+ orthanc                       |    101 | {practice,covid-19,imaging}                         | 
+ orthanc-wsi                   |     51 | {imaging,covid-19,his,oncology,laboratory,practice} | 
+ dicomscope                    |     28 | {imaging}                                           | 
+ htsjdk                        |     25 | {bio-dev}                                           | 
+ amide                         |     23 | {imaging}                                           | 
  dicom3tools                   |     23 | {imaging}                                           | 
  dcm2niix                      |     21 | {imaging}                                           | 
  orthanc-webviewer             |     18 | {imaging}                                           | 
  gnumed-server                 |     15 | {practice,covid-19}                                 | 
  ngs-sdk                       |     14 | {bio-dev}                                           | 
+ gdcm                          |     13 | {covid-19,imaging}                                  | 
  gdcm                          |     12 | {imaging-dev}                                       | 
- gdcm                          |     12 | {covid-19,imaging}                                  | 
  invesalius                    |     12 | {imaging}                                           | 
  nifticlib                     |     11 | {imaging}                                           | 
  lagan                         |     10 | {bio}                                               | 
  minc-tools                    |     10 | {imaging}                                           | 
  mrtrix3                       |     10 | {imaging}                                           | 
+ nifticlib                     |     10 | {imaging-dev}                                       | 
  dicomnifti                    |      9 | {imaging}                                           | 
- nifticlib                     |      9 | {imaging-dev}                                       | 
+ libminc                       |      9 | {imaging-dev}                                       | 
  orthanc-postgresql            |      9 | {imaging}                                           | 
  pixelmed                      |      9 | {imaging}                                           | 
  adun.app                      |      8 | {bio}                                               | 
- libminc                       |      8 | {imaging-dev}                                       | 
  orthanc-dicomweb              |      8 | {covid-19,imaging}                                  | 
  librg-utils-perl              |      7 | {bio}                                               | 
  ngs-sdk                       |      7 | {bio-dev}                                           | 
  mia                           |      6 | {imaging}                                           | 
  nifti2dicom                   |      6 | {imaging}                                           | 
- openslide                     |      6 | {imaging}                                           | 
  openslide                     |      6 | {imaging-dev}                                       | 
+ openslide                     |      6 | {imaging}                                           | 
  plastimatch                   |      6 | {imaging}                                           | 
  treeview                      |      6 | {bio,bio-phylogeny}                                 | 
  biojava-live                  |      5 | {bio-dev}                                           | 
  jebl2                         |      5 | {bio-dev}                                           | 
  ngs-sdk                       |      5 | {bio-dev}                                           | 
- nipype                        |      5 | {imaging-dev,imaging}                               | 
+ nipype                        |      5 | {imaging,imaging-dev}                               | 
  orthanc-mysql                 |      5 | {imaging}                                           | 
  bio-tradis                    |      4 | {bio-dev,bio}                                       | 
  getdata                       |      4 | {bio}                                               | 
@@ -49,39 +49,40 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
  orthanc-gdcm                  |      4 | {imaging}                                           | 
  orthanc-python                |      4 | {covid-19}                                          | 
  oscar                         |      4 | {practice,data,tools}                               | 
- salmon                        |      4 | {covid-19,bio}                                      | 
+ salmon                        |      4 | {bio,covid-19}                                      | 
  canu                          |      3 | {bio}                                               | 
  dicompyler                    |      3 | {oncology}                                          | 
  elastix                       |      3 | {imaging}                                           | 
  jellyfish1                    |      3 | {bio}                                               | 
  king                          |      3 | {typesetting,imaging}                               | 
  lamarc                        |      3 | {bio}                                               | 
- libdivsufsort                 |      3 | {bio-dev}                                           | 
+ libncl                        |      3 | {bio}                                               | 
  melting                       |      3 | {bio,cloud}                                         | 
  mhap                          |      3 | {bio-ngs,bio}                                       | 
- phyutility                    |      3 | {bio,cloud}                                         | 
+ phyutility                    |      3 | {cloud,bio}                                         | 
  rdp-alignment                 |      3 | {bio}                                               | 
  runcircos-gui                 |      3 | {bio}                                               | 
  saint                         |      3 | {bio}                                               | 
  bart-view                     |      2 | {imaging}                                           | 
- beast-mcmc                    |      2 | {bio-phylogeny,bio}                                 | 
+ beast-mcmc                    |      2 | {bio,bio-phylogeny}                                 | 
  biomaj3-cli                   |      2 | {cloud}                                             | 
  bitseq                        |      2 | {bio}                                               | 
  blimps                        |      2 | {bio}                                               | 
  brig                          |      2 | {bio}                                               | 
- cat-bat                       |      2 | {bio,covid-19}                                      | 
+ cat-bat                       |      2 | {covid-19,bio}                                      | 
  clonalframeml                 |      2 | {covid-19,bio}                                      | 
  clonalorigin                  |      2 | {bio}                                               | 
  delly                         |      2 | {covid-19,bio}                                      | 
- dextractor                    |      2 | {covid-19,bio}                                      | 
+ dextractor                    |      2 | {bio,covid-19}                                      | 
  embassy-domainatrix           |      2 | {bio,cloud}                                         | 
  embassy-domalign              |      2 | {bio,cloud}                                         | 
- embassy-domsearch             |      2 | {bio,cloud}                                         | 
+ embassy-domsearch             |      2 | {cloud,bio}                                         | 
  fastml                        |      2 | {bio}                                               | 
  gatb-core                     |      2 | {bio}                                               | 
  hinge                         |      2 | {bio}                                               | 
+ intake                        |      2 | {bio,bio-dev}                                       | 
  ipig                          |      2 | {bio}                                               | 
- libncl                        |      2 | {bio}                                               | 
+ libdivsufsort                 |      2 | {bio-dev}                                           | 
  librdp-taxonomy-tree-java     |      2 | {bio-dev}                                           | 
  mauve-aligner                 |      2 | {bio}                                               | 
  metaphlan2                    |      2 | {bio}                                               | 
@@ -94,13 +95,13 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
  python-wdlparse               |      2 | {bio-dev}                                           | 
  rambo-k                       |      2 | {bio}                                               | 
  rdp-classifier                |      2 | {bio}                                               | 
- rtax                          |      2 | {cloud,bio}                                         | 
- sibsim4                       |      2 | {cloud,bio}                                         | 
+ rtax                          |      2 | {bio,cloud}                                         | 
+ sibsim4                       |      2 | {bio,cloud}                                         | 
  sift                          |      2 | {bio}                                               | 
- spread-phy                    |      2 | {bio,bio-phylogeny}                                 | 
+ spread-phy                    |      2 | {bio-phylogeny,bio}                                 | 
  stacks                        |      2 | {bio}                                               | 
  tracetuner                    |      2 | {bio}                                               | 
- anfo                          |      1 | {cloud,bio}                                         | 
+ anfo                          |      1 | {bio,cloud}                                         | 
  arden                         |      1 | {cloud,bio}                                         | 
  assemblytics                  |      1 | {bio}                                               | 
  atropos                       |      1 | {bio}                                               | 
@@ -108,8 +109,7 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
  cutesv                        |      1 | {bio}                                               | 
  emmax                         |      1 | {bio}                                               | 
  gifticlib                     |      1 | {imaging-dev}                                       | 
- htscodecs                     |      1 | {covid-19,bio-dev}                                  | 
- intake                        |      1 | {bio,bio-dev}                                       | 
+ htscodecs                     |      1 | {bio-dev,covid-19}                                  | 
  jmodeltest                    |      1 | {bio,bio-phylogeny}                                 | 
  kmerresistance                |      1 | {bio}                                               | 
  libbio-mage-utils-perl        |      1 | {bio-dev}                                           | 
@@ -119,8 +119,7 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
  microbegps                    |      1 | {bio}                                               | 
  opensurgsim                   |      1 | {imaging-dev}                                       | 
  papyrus                       |      1 | {imaging-dev}                                       | 
- pbcopper                      |      1 | {bio-dev}                                           | 
- pigx-rnaseq                   |      1 | {covid-19,bio}                                      | 
+ pigx-rnaseq                   |      1 | {bio,covid-19}                                      | 
  pique                         |      1 | {bio}                                               | 
  pscan-chip                    |      1 | {bio}                                               | 
  qcumber                       |      1 | {bio}                                               | 
@@ -132,19 +131,19 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
  staden                        |      1 | {bio}                                               | 
  suitename                     |      1 | {bio}                                               | 
  surankco                      |      1 | {bio}                                               | 
- thesias                       |      1 | {bio,covid-19}                                      | 
- tophat-recondition            |      1 | {covid-19,bio}                                      | 
+ thesias                       |      1 | {covid-19,bio}                                      | 
+ tophat-recondition            |      1 | {bio,covid-19}                                      | 
  trace2dbest                   |      1 | {bio}                                               | 
  tvc                           |      1 | {bio}                                               | 
  zalign                        |      1 | {cloud,bio}                                         | 
- acedb                         |      0 | {bio,cloud}                                         | 
+ acedb                         |      0 | {cloud,bio}                                         | 
  bambamc                       |      0 | {bio-dev}                                           | 
  biojava4-live                 |      0 | {bio-dev}                                           | 
  biosyntax                     |      0 | {bio}                                               | 
  bmtk                          |      0 | {psychology}                                        | 
  camp                          |      0 | {imaging-dev}                                       | 
  ctn                           |      0 | {imaging-dev}                                       | 
- cufflinks                     |      0 | {bio,cloud}                                         | 
+ cufflinks                     |      0 | {cloud,bio}                                         | 
  eegdev                        |      0 | {imaging-dev}                                       | 
  emboss-explorer               |      0 | {bio}                                               | 
  emperor                       |      0 | {bio}                                               | 
@@ -164,9 +163,9 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
  libctapimkt                   |      0 | {practice}                                          | 
  libgkarrays                   |      0 | {bio-dev}                                           | 
  libhmsbeagle                  |      0 | {bio-dev}                                           | 
- libics                        |      0 | {imaging-dev,covid-19}                              | 
+ libics                        |      0 | {covid-19,imaging-dev}                              | 
  libjloda-java                 |      0 | {bio-dev}                                           | 
- libmaus2                      |      0 | {bio-dev,covid-19}                                  | 
+ libmaus2                      |      0 | {covid-19,bio-dev}                                  | 
  libmems                       |      0 | {bio-dev}                                           | 
  libmialm                      |      0 | {imaging-dev}                                       | 
  libmuscle                     |      0 | {bio-dev}                                           | 
@@ -180,31 +179,33 @@ Last-Update: Sat, 19 Feb 2022 01:42:04 +0000
  metastudent-data-2            |      0 | {bio}                                               | 
  mia                           |      0 | {imaging-dev}                                       | 
  miaviewit                     |      0 | {imaging-dev}                                       | 
- milib                         |      0 | {bio-dev,covid-19}                                  | 
+ milib                         |      0 | {covid-19,bio-dev}                                  | 
  ncbi-vdb                      |      0 | {bio-dev}                                           | 
  nifticlib                     |      0 | {imaging-dev}                                       | 
  opencfu                       |      0 | {laboratory}                                        | 
  orthanc-imagej                |      0 | {imaging}                                           | 
  parallel-fastq-dump           |      0 | {covid-19}                                          | 
+ pbcopper                      |      0 | {bio-dev}                                           | 
  pbseqlib                      |      0 | {bio-dev}                                           | 
  plasmidid                     |      0 | {bio,covid-19}                                      | 
- python-seqcluster             |      0 | {bio-dev,covid-19}                                  | 
  python-seqcluster             |      0 | {bio}                                               | 
+ python-seqcluster             |      0 | {bio-dev,covid-19}                                  | 
  resfinder-db                  |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
  seq-gen                       |      0 | {bio}                                               | 
- shovill                       |      0 | {covid-19,bio}                                      | 
+ shovill                       |      0 | {bio,covid-19}                                      | 
  sight                         |      0 | {imaging-dev}                                       | 
  simpleitk                     |      0 | {imaging-dev}                                       | 
  smrtanalysis                  |      0 | {bio,covid-19}                                      | 
  srf                           |      0 | {bio-dev}                                           | 
  tipp                          |      0 | {bio,covid-19}                                      | 
  varna                         |      0 | {bio}                                               | 
- varscan                       |      0 | {covid-19,bio}                                      | 
+ varscan                       |      0 | {bio,covid-19}                                      | 
  vienna-rna                    |      0 | {bio,covid-19}                                      | 
  xdffileio                     |      0 | {imaging-dev}                                       | 
  xxsds-dynamic                 |      0 | {bio-dev}                                           | 
+ megan-ce                      |     -1 | {bio}                                               | 
  mssstest                      |     -1 | {tools}                                             | 
  rockhopper                    |     -1 | {bio}                                               | 
-(234 rows)
+(235 rows)
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e3345fe893bb05008319506bd53938a499c8c250

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e3345fe893bb05008319506bd53938a499c8c250
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