[med-svn] [Git][med-team/pufferfish][upstream] New upstream version 1.7.0

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / pufferfish


Commits:
b5fcc2c5 by Andreas Tille at 2022-02-20T12:01:00+01:00
New upstream version 1.7.0
- - - - -


24 changed files:

- CMakeLists.txt
- + examples/run_yeast_example.sh
- external/twopaco/graphdump/compact_vector/compact_vector.hpp
- include/CommonTypes.hpp
- include/FastxParser.hpp
- include/FastxParserThreadUtils.hpp
- include/MemChainer.hpp
- include/MemCollector.hpp
- include/Util.hpp
- include/Cedar.hpp → include/cedar/Cedar.hpp
- include/EquivalenceClassBuilder.hpp → include/cedar/EquivalenceClassBuilder.hpp
- include/PuffMappingReader.hpp → include/cedar/PuffMappingReader.hpp
- include/SAMReader.hpp → include/cedar/SAMReader.hpp
- include/TargetGroup.hpp → include/cedar/TargetGroup.hpp
- include/Taxa.h → include/cedar/Taxa.h
- − include/chobo/optional.hpp
- − include/chobo/vector.hpp
- − include/chobo/vector_ptr.hpp
- − include/chobo/vector_view.hpp
- include/compact_vector/compact_iterator.hpp
- include/compact_vector/compact_vector.hpp
- include/concurrentqueue.h
- + include/itlib/dynamic_bitset.hpp
- + include/itlib/expected.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/commit/b5fcc2c5d04cf6eb892c40e86501a57df5099487

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View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/commit/b5fcc2c5d04cf6eb892c40e86501a57df5099487
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