Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
7a469899 by Andreas Tille at 2022-02-20T13:42:45+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,46 +1,44 @@
-Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
+Last-Update: Sun, 20 Feb 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {covid-19,imaging} |
- orthanc | 101 | {practice,covid-19,imaging} |
- orthanc-wsi | 51 | {imaging,covid-19,his,oncology,laboratory,practice} |
+ dcmtk | 183 | {imaging,covid-19} |
+ orthanc | 100 | {practice,covid-19,imaging} |
+ orthanc-wsi | 50 | {imaging,practice,oncology,his,covid-19,laboratory} |
dicomscope | 28 | {imaging} |
htsjdk | 25 | {bio-dev} |
- amide | 23 | {imaging} |
- dicom3tools | 23 | {imaging} |
- dcm2niix | 21 | {imaging} |
+ amide | 22 | {imaging} |
+ dicom3tools | 22 | {imaging} |
+ dcm2niix | 20 | {imaging} |
orthanc-webviewer | 18 | {imaging} |
- gnumed-server | 15 | {practice,covid-19} |
- ngs-sdk | 14 | {bio-dev} |
- gdcm | 13 | {covid-19,imaging} |
+ gnumed-server | 16 | {covid-19,practice} |
gdcm | 12 | {imaging-dev} |
- invesalius | 12 | {imaging} |
- nifticlib | 11 | {imaging} |
- lagan | 10 | {bio} |
- minc-tools | 10 | {imaging} |
- mrtrix3 | 10 | {imaging} |
+ gdcm | 12 | {covid-19,imaging} |
+ invesalius | 10 | {imaging} |
nifticlib | 10 | {imaging-dev} |
- dicomnifti | 9 | {imaging} |
+ nifticlib | 10 | {imaging} |
+ lagan | 9 | {bio} |
libminc | 9 | {imaging-dev} |
+ minc-tools | 9 | {imaging} |
+ mrtrix3 | 9 | {imaging} |
orthanc-postgresql | 9 | {imaging} |
- pixelmed | 9 | {imaging} |
- adun.app | 8 | {bio} |
+ dicomnifti | 8 | {imaging} |
orthanc-dicomweb | 8 | {covid-19,imaging} |
- librg-utils-perl | 7 | {bio} |
- ngs-sdk | 7 | {bio-dev} |
- mia | 6 | {imaging} |
+ pixelmed | 8 | {imaging} |
+ openslide | 7 | {imaging-dev} |
+ adun.app | 6 | {bio} |
+ librg-utils-perl | 6 | {bio} |
nifti2dicom | 6 | {imaging} |
- openslide | 6 | {imaging-dev} |
- openslide | 6 | {imaging} |
- plastimatch | 6 | {imaging} |
- treeview | 6 | {bio,bio-phylogeny} |
+ treeview | 6 | {bio-phylogeny,bio} |
biojava-live | 5 | {bio-dev} |
jebl2 | 5 | {bio-dev} |
- ngs-sdk | 5 | {bio-dev} |
- nipype | 5 | {imaging,imaging-dev} |
+ mia | 5 | {imaging} |
+ nipype | 5 | {imaging-dev,imaging} |
+ openslide | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
+ plastimatch | 5 | {imaging} |
bio-tradis | 4 | {bio-dev,bio} |
+ dicompyler | 4 | {oncology} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
libsbml | 4 | {bio-dev} |
@@ -48,40 +46,37 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
obitools | 4 | {bio} |
orthanc-gdcm | 4 | {imaging} |
orthanc-python | 4 | {covid-19} |
- oscar | 4 | {practice,data,tools} |
- salmon | 4 | {bio,covid-19} |
+ oscar | 4 | {data,tools,practice} |
+ salmon | 4 | {covid-19,bio} |
canu | 3 | {bio} |
- dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
- jellyfish1 | 3 | {bio} |
- king | 3 | {typesetting,imaging} |
lamarc | 3 | {bio} |
libncl | 3 | {bio} |
- melting | 3 | {bio,cloud} |
+ melting | 3 | {cloud,bio} |
mhap | 3 | {bio-ngs,bio} |
phyutility | 3 | {cloud,bio} |
rdp-alignment | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
bart-view | 2 | {imaging} |
- beast-mcmc | 2 | {bio,bio-phylogeny} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
biomaj3-cli | 2 | {cloud} |
bitseq | 2 | {bio} |
- blimps | 2 | {bio} |
brig | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
- clonalframeml | 2 | {covid-19,bio} |
+ clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
- delly | 2 | {covid-19,bio} |
- dextractor | 2 | {bio,covid-19} |
+ delly | 2 | {bio,covid-19} |
+ dextractor | 2 | {covid-19,bio} |
embassy-domainatrix | 2 | {bio,cloud} |
embassy-domalign | 2 | {bio,cloud} |
embassy-domsearch | 2 | {cloud,bio} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
- intake | 2 | {bio,bio-dev} |
ipig | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
+ king | 2 | {typesetting,imaging} |
libdivsufsort | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
@@ -89,7 +84,7 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
piler | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
- pplacer | 2 | {bio-phylogeny,covid-19,bio} |
+ pplacer | 2 | {bio-phylogeny,bio,covid-19} |
proalign | 2 | {bio,bio-phylogeny} |
pymia | 2 | {imaging-dev} |
python-wdlparse | 2 | {bio-dev} |
@@ -97,20 +92,20 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
rdp-classifier | 2 | {bio} |
rtax | 2 | {bio,cloud} |
sibsim4 | 2 | {bio,cloud} |
- sift | 2 | {bio} |
spread-phy | 2 | {bio-phylogeny,bio} |
stacks | 2 | {bio} |
- tracetuner | 2 | {bio} |
- anfo | 1 | {bio,cloud} |
+ anfo | 1 | {cloud,bio} |
arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
+ blimps | 1 | {bio} |
cmtk | 1 | {imaging} |
cutesv | 1 | {bio} |
emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- htscodecs | 1 | {bio-dev,covid-19} |
- jmodeltest | 1 | {bio,bio-phylogeny} |
+ htscodecs | 1 | {covid-19,bio-dev} |
+ intake | 1 | {bio-dev,bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libgenome | 1 | {bio-dev} |
@@ -119,11 +114,12 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
microbegps | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- pigx-rnaseq | 1 | {bio,covid-19} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
sga | 1 | {bio} |
+ sift | 1 | {bio} |
skesa | 1 | {bio} |
soapaligner | 1 | {bio} |
soapsnp | 1 | {bio} |
@@ -131,11 +127,12 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
staden | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- thesias | 1 | {covid-19,bio} |
- tophat-recondition | 1 | {bio,covid-19} |
+ thesias | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
+ tracetuner | 1 | {bio} |
tvc | 1 | {bio} |
- zalign | 1 | {cloud,bio} |
+ zalign | 1 | {bio,cloud} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -143,7 +140,7 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
+ cufflinks | 0 | {bio,cloud} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emperor | 0 | {bio} |
@@ -163,9 +160,9 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
libctapimkt | 0 | {practice} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -189,23 +186,24 @@ Last-Update: Sun, 20 Feb 2022 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
tipp | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
- vienna-rna | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
+ vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
+ malt | -1 | {bio} |
megan-ce | -1 | {bio} |
mssstest | -1 | {tools} |
rockhopper | -1 | {bio} |
-(235 rows)
+(233 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7a46989994a99547c8519ee5e62e3a02d4eee592
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7a46989994a99547c8519ee5e62e3a02d4eee592
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