[med-svn] [Git][med-team/ncbi-vdb][master] d/patches: Further cmake fixes

[Mathieu Malaterre (@malat)]

Mathieu Malaterre pushed to branch master at Debian Med / ncbi-vdb


Commits:
b1c9d499 by Mathieu Malaterre at 2022-02-21T09:28:30+01:00
d/patches: Further cmake fixes

- - - - -


1 changed file:

- debian/patches/fix_cmake.patch


Changes:

=====================================
debian/patches/fix_cmake.patch
=====================================
@@ -1,5 +1,7 @@
---- a/libs/CMakeLists.txt
-+++ b/libs/CMakeLists.txt
+Index: ncbi-vdb/libs/CMakeLists.txt
+===================================================================
+--- ncbi-vdb.orig/libs/CMakeLists.txt
++++ ncbi-vdb/libs/CMakeLists.txt
 @@ -32,7 +32,6 @@ add_subdirectory(axf) # sra tools depend
  add_subdirectory(blast)
  add_subdirectory(cloud)
@@ -17,9 +19,19 @@
      foreach( h IN ITEMS ${HEADERS} )
          install( DIRECTORY ${CMAKE_SOURCE_DIR}/interfaces/${h} DESTINATION ${INST_INCDIR} )
      endforeach()
---- a/test/CMakeLists.txt
-+++ b/test/CMakeLists.txt
-@@ -44,7 +44,6 @@ endif()
+Index: ncbi-vdb/test/CMakeLists.txt
+===================================================================
+--- ncbi-vdb.orig/test/CMakeLists.txt
++++ ncbi-vdb/test/CMakeLists.txt
+@@ -38,13 +38,12 @@ if( WIN32 )
+     set( COMMON_LIBS_WRITE ${COMMON_LINK_LIBRARIES} ncbi-wvdb Ws2_32 Crypt32 )
+ else()
+     link_libraries( ${COMMON_LINK_LIBRARIES} )
+-    set( COMMON_LIBS_READ   ncbi-vdb  dl pthread )
+-    set( COMMON_LIBS_WRITE  ncbi-wvdb dl pthread )
++    set( COMMON_LIBS_READ   ncbi-vdb  dl pthread z bz2 zstd mbedx509 mbedtls mbedcrypto)
++    set( COMMON_LIBS_WRITE  ncbi-wvdb dl pthread z bz2 zstd mbedx509 mbedtls mbedcrypto)
+ endif()
  
  add_subdirectory(ktst)
  add_subdirectory(cc)
@@ -27,8 +39,10 @@
  add_subdirectory(judy_test)
  add_subdirectory(klib)
  add_subdirectory(kfs)
---- a/libs/ncbi-vdb/CMakeLists.txt
-+++ b/libs/ncbi-vdb/CMakeLists.txt
+Index: ncbi-vdb/libs/ncbi-vdb/CMakeLists.txt
+===================================================================
+--- ncbi-vdb.orig/libs/ncbi-vdb/CMakeLists.txt
++++ ncbi-vdb/libs/ncbi-vdb/CMakeLists.txt
 @@ -30,9 +30,6 @@ set( VDB_LIB_CMN_TARGETS
      ncbi-bam
      vfs



View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/commit/b1c9d4997cced6975a87191c690212293b20f238

-- 
View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/commit/b1c9d4997cced6975a87191c690212293b20f238
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