Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
933d5c1b by Andreas Tille at 2022-02-21T13:42:59+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,82 +1,82 @@
-Last-Update: Mon, 21 Feb 2022 01:42:04 +0000
+Last-Update: Mon, 21 Feb 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19} |
- orthanc | 100 | {practice,covid-19,imaging} |
- orthanc-wsi | 50 | {imaging,practice,oncology,his,covid-19,laboratory} |
- dicomscope | 28 | {imaging} |
- htsjdk | 25 | {bio-dev} |
- amide | 22 | {imaging} |
- dicom3tools | 22 | {imaging} |
+ dcmtk | 177 | {imaging,covid-19} |
+ orthanc | 96 | {imaging,practice,covid-19} |
+ orthanc-wsi | 49 | {practice,his,imaging,oncology,covid-19,laboratory} |
+ htsjdk | 26 | {bio-dev} |
+ dicomscope | 25 | {imaging} |
+ amide | 23 | {imaging} |
+ dicom3tools | 23 | {imaging} |
dcm2niix | 20 | {imaging} |
orthanc-webviewer | 18 | {imaging} |
gnumed-server | 16 | {covid-19,practice} |
+ gdcm | 12 | {imaging,covid-19} |
gdcm | 12 | {imaging-dev} |
- gdcm | 12 | {covid-19,imaging} |
+ nifticlib | 11 | {imaging} |
invesalius | 10 | {imaging} |
+ minc-tools | 10 | {imaging} |
nifticlib | 10 | {imaging-dev} |
- nifticlib | 10 | {imaging} |
+ dicomnifti | 9 | {imaging} |
lagan | 9 | {bio} |
libminc | 9 | {imaging-dev} |
- minc-tools | 9 | {imaging} |
- mrtrix3 | 9 | {imaging} |
orthanc-postgresql | 9 | {imaging} |
- dicomnifti | 8 | {imaging} |
- orthanc-dicomweb | 8 | {covid-19,imaging} |
+ mrtrix3 | 8 | {imaging} |
+ openslide | 8 | {imaging-dev} |
+ orthanc-dicomweb | 8 | {imaging,covid-19} |
pixelmed | 8 | {imaging} |
- openslide | 7 | {imaging-dev} |
+ nifti2dicom | 7 | {imaging} |
adun.app | 6 | {bio} |
+ biojava-live | 6 | {bio-dev} |
librg-utils-perl | 6 | {bio} |
- nifti2dicom | 6 | {imaging} |
- treeview | 6 | {bio-phylogeny,bio} |
- biojava-live | 5 | {bio-dev} |
+ nipype | 6 | {imaging-dev,imaging} |
+ openslide | 6 | {imaging} |
+ treeview | 6 | {bio,bio-phylogeny} |
jebl2 | 5 | {bio-dev} |
mia | 5 | {imaging} |
- nipype | 5 | {imaging-dev,imaging} |
- openslide | 5 | {imaging} |
+ nifti2dicom | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
plastimatch | 5 | {imaging} |
- bio-tradis | 4 | {bio-dev,bio} |
- dicompyler | 4 | {oncology} |
+ bio-tradis | 4 | {bio,bio-dev} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
+ libncl | 4 | {bio} |
libsbml | 4 | {bio-dev} |
- nifti2dicom | 4 | {imaging} |
+ melting | 4 | {cloud,bio} |
obitools | 4 | {bio} |
orthanc-gdcm | 4 | {imaging} |
orthanc-python | 4 | {covid-19} |
- oscar | 4 | {data,tools,practice} |
- salmon | 4 | {covid-19,bio} |
+ oscar | 4 | {data,practice,tools} |
canu | 3 | {bio} |
+ dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
+ king | 3 | {typesetting,imaging} |
lamarc | 3 | {bio} |
- libncl | 3 | {bio} |
- melting | 3 | {cloud,bio} |
mhap | 3 | {bio-ngs,bio} |
- phyutility | 3 | {cloud,bio} |
+ phyutility | 3 | {bio,cloud} |
rdp-alignment | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
+ salmon | 3 | {covid-19,bio} |
bart-view | 2 | {imaging} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
biomaj3-cli | 2 | {cloud} |
bitseq | 2 | {bio} |
brig | 2 | {bio} |
- cat-bat | 2 | {covid-19,bio} |
- clonalframeml | 2 | {bio,covid-19} |
+ cat-bat | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {covid-19,bio} |
clonalorigin | 2 | {bio} |
delly | 2 | {bio,covid-19} |
dextractor | 2 | {covid-19,bio} |
embassy-domainatrix | 2 | {bio,cloud} |
- embassy-domalign | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
- king | 2 | {typesetting,imaging} |
libdivsufsort | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
@@ -84,15 +84,15 @@ Last-Update: Mon, 21 Feb 2022 01:42:04 +0000
piler | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
- pplacer | 2 | {bio-phylogeny,bio,covid-19} |
- proalign | 2 | {bio,bio-phylogeny} |
+ pplacer | 2 | {covid-19,bio-phylogeny,bio} |
+ proalign | 2 | {bio-phylogeny,bio} |
pymia | 2 | {imaging-dev} |
python-wdlparse | 2 | {bio-dev} |
rambo-k | 2 | {bio} |
rdp-classifier | 2 | {bio} |
rtax | 2 | {bio,cloud} |
sibsim4 | 2 | {bio,cloud} |
- spread-phy | 2 | {bio-phylogeny,bio} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
stacks | 2 | {bio} |
anfo | 1 | {cloud,bio} |
arden | 1 | {cloud,bio} |
@@ -114,7 +114,7 @@ Last-Update: Mon, 21 Feb 2022 01:42:04 +0000
microbegps | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- pigx-rnaseq | 1 | {covid-19,bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
pscan-chip | 1 | {bio} |
qcumber | 1 | {bio} |
@@ -133,7 +133,7 @@ Last-Update: Mon, 21 Feb 2022 01:42:04 +0000
tracetuner | 1 | {bio} |
tvc | 1 | {bio} |
zalign | 1 | {bio,cloud} |
- acedb | 0 | {cloud,bio} |
+ acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -160,9 +160,9 @@ Last-Update: Mon, 21 Feb 2022 01:42:04 +0000
libctapimkt | 0 | {practice} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -185,17 +185,17 @@ Last-Update: Mon, 21 Feb 2022 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
- tipp | 0 | {bio,covid-19} |
+ tipp | 0 | {covid-19,bio} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/933d5c1bb4088fad38ea670f9880d57a387946f0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/933d5c1bb4088fad38ea670f9880d57a387946f0
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