[med-svn] [Git][med-team/nanolyse][master] 2 commits: Fix data file (thanks to the hint of Andrius Merkys)

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / nanolyse


Commits:
8f6be49f by Andreas Tille at 2022-02-22T12:42:30+01:00
Fix data file (thanks to the hint of Andrius Merkys)

- - - - -
209a09a9 by Andreas Tille at 2022-02-22T12:43:38+01:00
routine-update: Ready to upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/tests/data/README
- debian/tests/data/paired_reads.fastq


Changes:

=====================================
debian/changelog
=====================================
@@ -1,8 +1,9 @@
-nanolyse (1.2.0-3) UNRELEASED; urgency=medium
+nanolyse (1.2.0-3) unstable; urgency=medium
 
   * Make sure autopkgtest is working on the provided data file
+  * Fix data file (thanks to the hint of Andrius Merkys)
 
- -- Andreas Tille <tille at debian.org>  Tue, 22 Feb 2022 09:30:41 +0100
+ -- Andreas Tille <tille at debian.org>  Tue, 22 Feb 2022 12:42:50 +0100
 
 nanolyse (1.2.0-2) unstable; urgency=medium
 


=====================================
debian/tests/data/README
=====================================
@@ -1,6 +1,9 @@
 This fastq file was taken from package ncbi-blast+
    c++/src/algo/blast/blastinput/unit_test/data/paired_reads.fastq
 
+I had to fix this dataset according to the hint by Andrius Merkys
+   https://lists.debian.org/debian-med/2022/02/msg00101.html
+
 FIXME: I have no idea whether this data set makes any sense at all.
 
  -- Andreas Tille <tille at debian.org>  Fri, 15 May 2020 15:27:17 +0200


=====================================
debian/tests/data/paired_reads.fastq
=====================================
@@ -1,4 +1,4 @@
- at pair1  (both are read)
+ at pair1
 GAATGTCCGTCTGGGTCTCCTTGTGCTGCGGTCCTGGCAACTCGTAGAATTTCTTACCAAAGTATCGATCCGGGAGATAGTACGATGGATACTCCGCCCTCAGCCTCTCG
 +pair1
 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFF<FFFFFFFFFFFFFFFFFFFFFFFF
@@ -6,7 +6,7 @@ BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFB
 ATGTTTTCCGATCCCGCCCAGGAGTCGGTTGCCACGCAGACGGAGGCACAACCGGTTCCGTCGCCCATCTGCACCCCACTGCTGATGGTGGACGAGGATGGACGAAAGCG
 +pair2
 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFF<FFFFFFFFFFFFFFFFFFFFFFFF
- at incomplete1.1  (only the first is accepted)
+ at incomplete1.1
 ATGTTTTCCGATCCCGCCCAGGAGTCGGTTGCCACGCAGACGGAGGCACAACCGGTTCCGTCGCCCATCTGCACCCCACTGCTGATGGTGGACGAGGATGGACGAAAGCG
 +incomplete1.1
 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFF<FFFFFFFFFFFFFFFFFFFFFFFF
@@ -14,7 +14,7 @@ BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFB
 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
 +incomplete1.2
 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFFF
- at incomplete2.1   (only the second is accepted)
+ at incomplete2.1
 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
 +incomplete2.1
 BBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFBFFFF<FFFFFFFFFFFFFFFFBFFFFFF



View it on GitLab: https://salsa.debian.org/med-team/nanolyse/-/compare/847f0439ab66d47a512bab6fbea61268ffec4213...209a09a918ad3bef4fa8e29618d35495dbb22118

-- 
View it on GitLab: https://salsa.debian.org/med-team/nanolyse/-/compare/847f0439ab66d47a512bab6fbea61268ffec4213...209a09a918ad3bef4fa8e29618d35495dbb22118
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