Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ef475fad by Andreas Tille at 2022-02-26T13:42:18+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,14 +1,14 @@
-Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
+Last-Update: Sat, 26 Feb 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {covid-19,imaging} |
+ dcmtk | 183 | {covid-19,imaging} |
orthanc | 100 | {practice,covid-19,imaging} |
orthanc-wsi | 48 | {imaging,laboratory,practice,oncology,covid-19,his} |
- htsjdk | 29 | {bio-dev} |
+ htsjdk | 30 | {bio-dev} |
dicomscope | 27 | {imaging} |
- amide | 26 | {imaging} |
- dicom3tools | 25 | {imaging} |
+ dicom3tools | 26 | {imaging} |
+ amide | 24 | {imaging} |
dcm2niix | 20 | {imaging} |
orthanc-webviewer | 19 | {imaging} |
gnumed-server | 16 | {practice,covid-19} |
@@ -16,48 +16,57 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
invesalius | 15 | {imaging} |
minc-tools | 13 | {imaging} |
nifticlib | 13 | {imaging} |
- dicomnifti | 11 | {imaging} |
- gdcm | 11 | {covid-19,imaging} |
+ dicomnifti | 12 | {imaging} |
+ gdcm | 12 | {covid-19,imaging} |
pixelmed | 11 | {imaging} |
nifti2dicom | 10 | {imaging} |
- nifticlib | 10 | {imaging-dev} |
- openslide | 10 | {imaging-dev} |
openslide | 10 | {imaging} |
adun.app | 9 | {bio} |
+ lagan | 9 | {bio} |
libminc | 9 | {imaging-dev} |
- mrtrix3 | 9 | {imaging} |
+ nifticlib | 9 | {imaging-dev} |
+ openslide | 9 | {imaging-dev} |
orthanc-dicomweb | 9 | {imaging,covid-19} |
orthanc-postgresql | 9 | {imaging} |
- lagan | 8 | {bio} |
- biojava-live | 7 | {bio-dev} |
+ biojava-live | 8 | {bio-dev} |
+ mrtrix3 | 8 | {imaging} |
+ nipype | 8 | {imaging,imaging-dev} |
+ mia | 7 | {imaging} |
nifti2dicom | 7 | {imaging} |
- nipype | 7 | {imaging,imaging-dev} |
librg-utils-perl | 6 | {bio} |
- mia | 6 | {imaging} |
+ obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
+ plastimatch | 6 | {imaging} |
salmon | 6 | {covid-19,bio} |
- treeview | 6 | {bio-phylogeny,bio} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ ghmm | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
- obitools | 5 | {bio} |
+ libncl | 5 | {bio} |
orthanc-gdcm | 5 | {imaging} |
oscar | 5 | {tools,practice,data} |
- plastimatch | 5 | {imaging} |
- bio-tradis | 4 | {bio-dev,bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
dicompyler | 4 | {oncology} |
getdata | 4 | {bio} |
- ghmm | 4 | {bio} |
- libncl | 4 | {bio} |
libsbml | 4 | {bio-dev} |
melting | 4 | {cloud,bio} |
orthanc-python | 4 | {covid-19} |
+ rdp-alignment | 4 | {bio} |
+ stacks | 4 | {bio} |
+ bitseq | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ jellyfish1 | 3 | {bio} |
lamarc | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
phyutility | 3 | {cloud,bio} |
- rdp-alignment | 3 | {bio} |
+ qcumber | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
- stacks | 3 | {bio} |
+ surankco | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ tvc | 3 | {bio} |
anfo | 2 | {bio,cloud} |
arden | 2 | {bio,cloud} |
assemblytics | 2 | {bio} |
@@ -65,16 +74,13 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
bart-view | 2 | {imaging} |
beast-mcmc | 2 | {bio,bio-phylogeny} |
biomaj3-cli | 2 | {cloud} |
- bitseq | 2 | {bio} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
clonalframeml | 2 | {bio,covid-19} |
- clonalorigin | 2 | {bio} |
cmtk | 2 | {imaging} |
delly | 2 | {covid-19,bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
embassy-domalign | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
@@ -82,14 +88,12 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
hinge | 2 | {bio} |
intake | 2 | {bio,bio-dev} |
ipig | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
jmodeltest | 2 | {bio-phylogeny,bio} |
king | 2 | {imaging,typesetting} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libdivsufsort | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
mhap | 2 | {bio,bio-ngs} |
piler | 2 | {bio} |
@@ -100,7 +104,6 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
pscan-chip | 2 | {bio} |
pymia | 2 | {imaging-dev} |
python-wdlparse | 2 | {bio-dev} |
- qcumber | 2 | {bio} |
rambo-k | 2 | {bio} |
rdp-classifier | 2 | {bio} |
rtax | 2 | {bio,cloud} |
@@ -112,10 +115,8 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
spread-phy | 2 | {bio-phylogeny,bio} |
staden | 2 | {bio} |
suitename | 2 | {bio} |
- surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
- tracetuner | 2 | {bio} |
- tvc | 2 | {bio} |
+ varscan | 2 | {bio,covid-19} |
zalign | 2 | {bio,cloud} |
acedb | 1 | {bio,cloud} |
cufflinks | 1 | {cloud,bio} |
@@ -140,7 +141,6 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
srf | 1 | {bio-dev} |
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {covid-19,bio} |
- varscan | 1 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -189,8 +189,8 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {bio,covid-19} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,80 +1,80 @@
-Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
+Last-Update: Sat, 26 Feb 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3207 | {viewing} |
- sympy | 1594 | {physics,nanoscale-physics} |
- spyder | 247 | {numericalcomputation} |
- armadillo | 228 | {mathematics-dev} |
- suitesparse | 225 | {mathematics-dev,numericalcomputation} |
- python-pyqtgraph | 150 | {viewing} |
- atlas | 103 | {mathematics-dev} |
- arpack | 57 | {mathematics-dev} |
+ gts | 3184 | {viewing} |
+ sympy | 1617 | {physics,nanoscale-physics} |
+ spyder | 242 | {numericalcomputation} |
+ armadillo | 237 | {mathematics-dev} |
+ suitesparse | 228 | {mathematics-dev,numericalcomputation} |
+ python-pyqtgraph | 152 | {viewing} |
+ atlas | 98 | {mathematics-dev} |
+ arpack | 58 | {mathematics-dev} |
cypari2 | 57 | {mathematics-dev} |
pyzo | 57 | {numericalcomputation} |
arduino-mk | 52 | {robotics} |
- flintqs | 52 | {mathematics} |
+ flintqs | 51 | {mathematics} |
rubiks | 51 | {geometry,mathematics} |
- eclib | 50 | {mathematics} |
- imview | 50 | {viewing} |
- fftw | 39 | {physics-dev,meteorology-dev,mathematics-dev} |
- bibutils | 34 | {typesetting} |
- scalapack | 30 | {nanoscale-physics-dev} |
+ eclib | 49 | {mathematics} |
+ imview | 49 | {viewing} |
+ fftw | 40 | {physics-dev,meteorology-dev,mathematics-dev} |
+ bibutils | 35 | {typesetting} |
+ scalapack | 32 | {nanoscale-physics-dev} |
guidata | 28 | {dataacquisition-dev} |
guiqwt | 28 | {numericalcomputation,viewing} |
- sketch | 28 | {typesetting} |
+ sketch | 26 | {typesetting} |
geg | 25 | {viewing} |
gts | 25 | {viewing-dev} |
- flann | 24 | {mathematics-dev,engineering-dev} |
feedgnuplot | 23 | {viewing} |
- bossa | 22 | {devices} |
- vitables | 22 | {numericalcomputation} |
- cernlib | 21 | {highenergy-physics} |
+ flann | 23 | {mathematics-dev,engineering-dev} |
+ cernlib | 22 | {highenergy-physics} |
+ bossa | 21 | {devices} |
neuron | 21 | {neuroscience-modeling,highenergy-physics,simulations} |
+ vitables | 21 | {numericalcomputation} |
ppl | 20 | {numericalcomputation} |
coinor-symphony | 18 | {numericalcomputation,logic,mathematics} |
+ fftw | 18 | {meteorology-dev,physics-dev,mathematics-dev} |
ntl | 18 | {mathematics-dev} |
- fftw | 17 | {meteorology-dev,physics-dev,mathematics-dev} |
gfsview | 17 | {viewing} |
+ opencascade | 17 | {simulations} |
apophenia | 16 | {statistics} |
libitpp | 16 | {engineering-dev,mathematics-dev} |
- nltk | 16 | {linguistics} |
- opencascade | 16 | {simulations} |
- libmatio | 15 | {mathematics-dev} |
mathgl | 15 | {viewing} |
picosat | 15 | {logic} |
rheolef | 15 | {mathematics} |
- ros-ros-environment | 15 | {robotics-dev} |
tango | 15 | {dataacquisition} |
+ cernlib | 14 | {highenergy-physics-dev} |
+ libmatio | 14 | {mathematics-dev} |
+ nltk | 14 | {linguistics} |
pcl | 14 | {robotics-dev} |
- cernlib | 13 | {highenergy-physics-dev} |
+ ros-ros-environment | 14 | {robotics-dev} |
debian-science | 13 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
form | 13 | {mathematics} |
getdp | 13 | {engineering,mathematics,simulations} |
libm4ri | 13 | {mathematics-dev} |
+ opticalraytracer | 13 | {physics} |
matlab-support | 12 | {mathematics,numericalcomputation} |
neuron | 12 | {highenergy-physics-dev} |
- opticalraytracer | 12 | {physics} |
+ polylib | 12 | {mathematics} |
toulbar2 | 12 | {logic,physics,mathematics,numericalcomputation} |
+ auto-07p | 11 | {mathematics} |
lxi-tools | 11 | {engineering,dataacquisition} |
- polylib | 11 | {mathematics} |
urdfdom-headers | 11 | {robotics-dev} |
- auto-07p | 10 | {mathematics} |
cliquer | 10 | {mathematics} |
debian-science | 10 | {nanoscale-physics,machine-learning,physics,economics} |
psurface | 10 | {numericalcomputation} |
ros-rosconsole | 10 | {robotics-dev} |
+ teem | 10 | {imageanalysis} |
uctodata | 10 | {linguistics} |
debian-science | 9 | {neuroscience-cognitive,machine-learning} |
- dune-uggrid | 9 | {mathematics-dev} |
eclib | 9 | {mathematics-dev} |
libcgns | 9 | {engineering} |
- lrcalc | 9 | {mathematics} |
lrcalc | 9 | {mathematics-dev} |
+ lrcalc | 9 | {mathematics} |
muparser | 9 | {mathematics-dev} |
tango | 9 | {dataacquisition} |
- teem | 9 | {imageanalysis} |
ucto | 9 | {linguistics} |
+ cernlib | 8 | {highenergy-physics} |
code-saturne | 8 | {engineering-dev,mathematics-dev} |
debian-science | 8 | {physics,nanoscale-physics,statistics,economics} |
debian-science | 8 | {electrophysiology} |
@@ -87,10 +87,10 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
libzn-poly | 8 | {mathematics-dev} |
scram | 8 | {engineering} |
astk | 7 | {engineering} |
- cernlib | 7 | {highenergy-physics} |
cliquer | 7 | {mathematics-dev} |
coda | 7 | {meteorology} |
debian-science | 7 | {tools} |
+ dune-uggrid | 7 | {mathematics-dev} |
gf2x | 7 | {mathematics-dev} |
iml | 7 | {mathematics-dev} |
libbraiding | 7 | {mathematics-dev} |
@@ -100,14 +100,14 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
taurus | 7 | {dataacquisition} |
coinmp | 6 | {logic,mathematics-dev,numericalcomputation} |
debian-science | 6 | {psychophysics} |
- dune-istl | 6 | {mathematics-dev} |
hpcc | 6 | {distributedcomputing,numericalcomputation} |
morse-simulator | 6 | {robotics} |
neuron | 6 | {highenergy-physics-dev} |
opencascade | 6 | {simulations} |
- apertium-streamparser | 5 | {linguistics} |
+ cernlib | 5 | {highenergy-physics} |
cimg | 5 | {imageanalysis-dev} | {x11::library}
debian-science | 5 | {electrophysiology} |
+ dune-istl | 5 | {mathematics-dev} |
frog | 5 | {linguistics} |
liblxi | 5 | {engineering-dev,dataacquisition-dev} |
libmatheval | 5 | {mathematics} |
@@ -115,13 +115,13 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
openstereogram | 5 | {tools} |
ratpoints | 5 | {mathematics-dev} |
sac2mseed | 5 | {geography} |
- alberta | 4 | {engineering-dev} |
+ x13as | 5 | {economics} |
+ apertium-streamparser | 4 | {linguistics} |
apophenia | 4 | {statistics} |
cernlib | 4 | {highenergy-physics} |
coda | 4 | {meteorology-dev} |
debian-science | 4 | {nanoscale-physics-dev} |
dimbl | 4 | {linguistics} |
- dune-localfunctions | 4 | {mathematics-dev} |
dxflib | 4 | {engineering-dev} |
fastjet | 4 | {highenergy-physics-dev} |
harp | 4 | {meteorology} |
@@ -135,14 +135,15 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
qd | 4 | {mathematics-dev} |
sardana | 4 | {dataacquisition} |
timbl | 4 | {linguistics} |
- x13as | 4 | {economics} |
+ alberta | 3 | {engineering-dev} |
cbflib | 3 | {nanoscale-physics} |
cernlib | 3 | {highenergy-physics} |
clhep | 3 | {highenergy-physics-dev} |
- debian-science | 3 | {neuroscience-cognitive} |
debian-science | 3 | {economics} |
- jhdf | 3 | {engineering-dev} |
+ debian-science | 3 | {neuroscience-cognitive} |
+ dune-localfunctions | 3 | {mathematics-dev} |
jhdf | 3 | {engineering} |
+ jhdf | 3 | {engineering-dev} |
liblbfgs | 3 | {mathematics-dev} |
looptools | 3 | {highenergy-physics} |
mbtserver | 3 | {linguistics} |
@@ -150,6 +151,7 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
ompl | 3 | {robotics-dev} |
optlang | 3 | {mathematics-dev} |
qwtplot3d | 3 | {viewing-dev} |
+ sollya | 3 | {mathematics-dev} |
sparskit | 3 | {mathematics-dev} |
ssm | 3 | {nanoscale-physics} |
tango | 3 | {dataacquisition-dev} |
@@ -163,16 +165,18 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
looptools | 2 | {highenergy-physics-dev} |
mrmpi | 2 | {tools} |
pynac | 2 | {mathematics-dev} |
- sollya | 2 | {mathematics-dev} |
- tango | 2 | {dataacquisition-dev} |
tango | 2 | {dataacquisition} |
+ tango | 2 | {dataacquisition-dev} |
+ cbflib | 1 | {nanoscale-physics-dev} |
cld2 | 1 | {linguistics} |
+ clipper | 1 | {nanoscale-physics-dev} |
cqrlib | 1 | {mathematics-dev} |
cvector | 1 | {mathematics-dev} |
dune-functions | 1 | {mathematics-dev} |
dune-typetree | 1 | {mathematics-dev} |
gemmlowp | 1 | {mathematics-dev} |
itsol | 1 | {mathematics-dev} |
+ libccp4 | 1 | {nanoscale-physics-dev} |
liborigin2 | 1 | {viewing-dev} |
metis-edf | 1 | {numericalcomputation,engineering} |
neartree | 1 | {mathematics-dev,numericalcomputation} |
@@ -225,13 +229,11 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
apriltag | 0 | {robotics-dev} |
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
- cbflib | 0 | {nanoscale-physics-dev} |
cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
- clipper | 0 | {nanoscale-physics-dev} |
coda | 0 | {meteorology-dev} |
code-saturne | 0 | {engineering-dev,mathematics-dev} |
code-saturne | 0 | {engineering} |
@@ -241,7 +243,6 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
etsf-io | 0 | {nanoscale-physics-dev} |
fastjet | 0 | {highenergy-physics-dev} |
glpk-java | 0 | {mathematics-dev} |
- libccp4 | 0 | {nanoscale-physics-dev} |
libdogleg | 0 | {mathematics-dev} |
libfolia | 0 | {linguistics} |
libgetdata | 0 | {dataacquisition-dev} |
@@ -256,8 +257,8 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
qrupdate | 0 | {mathematics-dev} |
robot-testing-framework | 0 | {robotics-dev} |
- ros-metapackages | 0 | {robotics} |
ros-metapackages | 0 | {robotics-dev} |
+ ros-metapackages | 0 | {robotics} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
sagemath-database-elliptic-curves | 0 | {mathematics} |
@@ -269,5 +270,5 @@ Last-Update: Sat, 26 Feb 2022 01:42:04 +0000
tachyon | 0 | {mathematics} |
trilinos | 0 | {engineering-dev,physics-dev,mathematics-dev} |
visp-images | 0 | {robotics-dev} |
-(301 rows)
+(302 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ef475fad70bc34a227008a4956f3f0d162d6a5e2
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