[med-svn] [Git][python-team/packages/python-ncls][master] 6 commits: Move package to Debian Python Team

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Python Team / packages / python-ncls


Commits:
3c6adc2b by Andreas Tille at 2022-01-02T18:15:41+01:00
Move package to Debian Python Team

- - - - -
03f55351 by Andreas Tille at 2022-01-02T18:16:25+01:00
routine-update: New upstream version

- - - - -
7c6a01cd by Andreas Tille at 2022-01-02T18:16:26+01:00
New upstream version 0.0.63-hotfix+ds
- - - - -
de2c1ffa by Andreas Tille at 2022-01-02T18:16:26+01:00
Update upstream source from tag 'upstream/0.0.63-hotfix+ds'

Update to upstream version '0.0.63-hotfix+ds'
with Debian dir 0facbe0537228537b9efd8b861a37b590ba6446c
- - - - -
2f2ab8d9 by Andreas Tille at 2022-01-02T18:18:15+01:00
Upstream has applied patch

- - - - -
9a78f4f0 by Andreas Tille at 2022-01-02T18:21:30+01:00
Upload to unstable

- - - - -


6 changed files:

- + .travis.yml
- debian/changelog
- debian/control
- − debian/patches/fix-FTBFS.patch
- − debian/patches/series
- ncls/src/ncls.pyx


Changes:

=====================================
.travis.yml
=====================================
@@ -0,0 +1,9 @@
+language: python
+python:
+  - "3.6"
+install:
+  - pip install cython pytest
+  - python setup.py install
+
+# functionality is tested in the pyranges package
+script: py.test tests/test_ncls.py && cd ~/ && python -c 'import ncls; print(ncls.__version__)'


=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+python-ncls (0.0.63-hotfix+ds-1) unstable; urgency=medium
+
+  * Team upload.
+  * Move package to Debian Python Team
+  * Upstream has applied patch
+
+ -- Andreas Tille <tille at debian.org>  Sun, 02 Jan 2022 18:18:24 +0100
+
 python-ncls (0.0.63+ds-1) unstable; urgency=medium
 
   * New upstream version 0.0.63+ds


=====================================
debian/control
=====================================
@@ -1,5 +1,5 @@
 Source: python-ncls
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Maintainer: Debian Python Team <team+python at tracker.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>,
            Nilesh Patra <nilesh at debian.org>
 Section: science
@@ -13,8 +13,8 @@ Build-Depends: debhelper-compat (= 13),
                python3-numpy <!nocheck>,
                python3-pytest <!nocheck>
 Standards-Version: 4.6.0
-Vcs-Browser: https://salsa.debian.org/med-team/python-ncls
-Vcs-Git: https://salsa.debian.org/med-team/python-ncls.git
+Vcs-Browser: https://salsa.debian.org/python-team/packages/python-ncls
+Vcs-Git: https://salsa.debian.org/python-team/packages/python-ncls.git
 Homepage: https://github.com/biocore-ntnu/ncls
 Rules-Requires-Root: no
 


=====================================
debian/patches/fix-FTBFS.patch deleted
=====================================
@@ -1,24 +0,0 @@
-From e813f99031ca37310ac91d16a1d3a64b517601d1 Mon Sep 17 00:00:00 2001
-From: endre bakken stovner <endrebakkenstovner at endres-MacBook-Air.local>
-Date: Tue, 2 Nov 2021 17:56:00 +0100
-Subject: [PATCH] hotfix
-
----
- ncls/src/ncls.pyx | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/ncls/src/ncls.pyx b/ncls/src/ncls.pyx
-index 4c0233e..ba7d0d6 100644
---- a/ncls/src/ncls.pyx
-+++ b/ncls/src/ncls.pyx
-@@ -446,8 +446,8 @@ cdef class NCLS64:
-     @cython.boundscheck(False)
-     @cython.wraparound(False)
-     @cython.initializedcheck(False)
--    cpdef set_difference_helper(self, const int64_t [::1] starts, const int64_t [::1] ends, const int64_t [::1] indexes, const int64_t [::1] nhits,
--                                const int64_t[::1] nhits):
-+    cpdef set_difference_helper(self, const int64_t [::1] starts, const int64_t [::1] ends, const int64_t [::1] indexes,
-+                                const int64_t [::1] nhits):
- 
-         cdef int i
-         cdef int nhit = 0


=====================================
debian/patches/series deleted
=====================================
@@ -1 +0,0 @@
-fix-FTBFS.patch


=====================================
ncls/src/ncls.pyx
=====================================
@@ -446,8 +446,8 @@ cdef class NCLS64:
     @cython.boundscheck(False)
     @cython.wraparound(False)
     @cython.initializedcheck(False)
-    cpdef set_difference_helper(self, const int64_t [::1] starts, const int64_t [::1] ends, const int64_t [::1] indexes, const int64_t [::1] nhits,
-                                const int64_t[::1] nhits):
+    cpdef set_difference_helper(self, const int64_t [::1] starts, const int64_t [::1] ends, const int64_t [::1] indexes,
+                                const int64_t [::1] nhits):
 
         cdef int i
         cdef int nhit = 0



View it on GitLab: https://salsa.debian.org/python-team/packages/python-ncls/-/compare/62c46f32c0f27cb7f57c41e0d6a3e097d2da429d...9a78f4f047963a0282bf144f7eb91a2cdab5a6ff

-- 
View it on GitLab: https://salsa.debian.org/python-team/packages/python-ncls/-/compare/62c46f32c0f27cb7f57c41e0d6a3e097d2da429d...9a78f4f047963a0282bf144f7eb91a2cdab5a6ff
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