Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
0dc119a2 by Andreas Tille at 2022-01-11T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,144 +1,139 @@
-Last-Update: Tue, 11 Jan 2022 01:42:03 +0000
+Last-Update: Tue, 11 Jan 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 182 | {imaging,covid-19} |
- orthanc | 104 | {covid-19,imaging,practice} |
+ orthanc | 106 | {covid-19,imaging,practice} |
orthanc-wsi | 52 | {oncology,laboratory,practice,his,covid-19,imaging} |
- htsjdk | 28 | {bio-dev} |
- dicom3tools | 27 | {imaging} |
- dicomscope | 26 | {imaging} |
+ dicom3tools | 26 | {imaging} |
+ htsjdk | 26 | {bio-dev} |
amide | 25 | {imaging} |
- dcm2niix | 17 | {imaging} |
- orthanc-webviewer | 16 | {imaging} |
- gdcm | 15 | {covid-19,imaging} |
+ dicomscope | 25 | {imaging} |
+ orthanc-webviewer | 17 | {imaging} |
+ dcm2niix | 16 | {imaging} |
+ gdcm | 14 | {covid-19,imaging} |
gnumed-server | 14 | {covid-19,practice} |
- minc-tools | 14 | {imaging} |
invesalius | 13 | {imaging} |
+ minc-tools | 13 | {imaging} |
+ ngs-sdk | 13 | {bio-dev} |
gdcm | 12 | {imaging-dev} |
- ngs-sdk | 12 | {bio-dev} |
- adun.app | 11 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
- openslide | 11 | {imaging} |
- pixelmed | 11 | {imaging} |
- dicomnifti | 10 | {imaging} |
+ adun.app | 10 | {bio} |
libminc | 10 | {imaging-dev} |
+ openslide | 10 | {imaging} |
+ pixelmed | 10 | {imaging} |
+ dicomnifti | 9 | {imaging} |
mia | 9 | {imaging} |
nifticlib | 9 | {imaging-dev} |
- biojava-live | 8 | {bio-dev} |
+ orthanc-dicomweb | 9 | {imaging,covid-19} |
ngs-sdk | 8 | {bio-dev} |
- nifti2dicom | 8 | {imaging} |
- nifticlib | 8 | {imaging} |
- orthanc-dicomweb | 8 | {imaging,covid-19} |
- plastimatch | 8 | {imaging} |
- lagan | 7 | {bio} |
- mrtrix3 | 7 | {imaging} |
+ orthanc-postgresql | 8 | {imaging} |
+ biojava-live | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
+ nifticlib | 7 | {imaging} |
openslide | 7 | {imaging-dev} |
- orthanc-postgresql | 7 | {imaging} |
- king | 6 | {typesetting,imaging} |
+ plastimatch | 7 | {imaging} |
+ lagan | 6 | {bio} |
librg-utils-perl | 6 | {bio} |
- nipype | 6 | {imaging,imaging-dev} |
+ mrtrix3 | 6 | {imaging} |
+ nifti2dicom | 6 | {imaging} |
+ bart-view | 5 | {imaging} |
+ elastix | 5 | {imaging} |
+ king | 5 | {typesetting,imaging} |
libdivsufsort | 5 | {bio-dev} |
ngs-sdk | 5 | {bio-dev} |
+ nipype | 5 | {imaging,imaging-dev} |
obitools | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- arden | 4 | {cloud,bio} |
- bart-view | 4 | {imaging} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- bio-tradis | 4 | {bio-dev,bio} |
dicompyler | 4 | {oncology} |
- elastix | 4 | {imaging} |
- embassy-domalign | 4 | {cloud,bio} |
- jebl2 | 4 | {bio-dev} |
libncl | 4 | {bio} |
- melting | 4 | {bio,cloud} |
orthanc-mysql | 4 | {imaging} |
+ orthanc-python | 4 | {covid-19} |
pymia | 4 | {imaging-dev} |
- staden | 4 | {bio} |
- tracetuner | 4 | {bio} |
- treeview | 4 | {bio,bio-phylogeny} |
- anfo | 3 | {bio,cloud} |
- assemblytics | 3 | {bio} |
- bitseq | 3 | {bio} |
- brig | 3 | {bio} |
- cat-bat | 3 | {bio,covid-19} |
- clonalorigin | 3 | {bio} |
- embassy-domainatrix | 3 | {bio,cloud} |
- fastml | 3 | {bio} |
- ghmm | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- lamarc | 3 | {bio} |
- orthanc-python | 3 | {covid-19} |
+ salmon | 4 | {covid-19,bio} |
+ arden | 3 | {cloud,bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ bio-tradis | 3 | {bio-dev,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
+ jebl2 | 3 | {bio-dev} |
+ melting | 3 | {bio,cloud} |
+ orthanc-gdcm | 3 | {imaging} |
oscar | 3 | {data,tools,practice} |
- pigx-rnaseq | 3 | {bio,covid-19} |
- piler | 3 | {bio} |
- pscan-chip | 3 | {bio} |
- runcircos-gui | 3 | {bio} |
- saint | 3 | {bio} |
- sibsim4 | 3 | {bio,cloud} |
- spread-phy | 3 | {bio,bio-phylogeny} |
- stacks | 3 | {bio} |
- thesias | 3 | {covid-19,bio} |
- tvc | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
- atropos | 2 | {bio} |
- biomaj3-cli | 2 | {cloud} |
- canu | 2 | {bio} |
- clonalframeml | 2 | {covid-19,bio} |
- delly | 2 | {bio,covid-19} |
- dextractor | 2 | {covid-19,bio} |
- embassy-domsearch | 2 | {bio,cloud} |
- emmax | 2 | {bio} |
- gatb-core | 2 | {bio} |
+ staden | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ treeview | 3 | {bio,bio-phylogeny} |
+ anfo | 2 | {bio,cloud} |
+ assemblytics | 2 | {bio} |
+ bitseq | 2 | {bio} |
+ brig | 2 | {bio} |
+ cat-bat | 2 | {bio,covid-19} |
+ clonalorigin | 2 | {bio} |
+ embassy-domainatrix | 2 | {bio,cloud} |
+ fastml | 2 | {bio} |
getdata | 2 | {bio} |
- hinge | 2 | {bio} |
- ipig | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
- kmerresistance | 2 | {bio} |
+ ghmm | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
+ lamarc | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- libpal-java | 2 | {bio-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
- orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
- phyutility | 2 | {bio,cloud} |
- pique | 2 | {bio} |
- placnet | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
- pplacer | 2 | {covid-19,bio,bio-phylogeny} |
- proalign | 2 | {bio-phylogeny,bio} |
- qcumber | 2 | {bio} |
- rambo-k | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- sga | 2 | {bio} |
- skesa | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- spaln | 2 | {bio,covid-19} |
- sprai | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
- tophat-recondition | 2 | {covid-19,bio} |
- trace2dbest | 2 | {bio} |
- varna | 2 | {bio} |
+ pigx-rnaseq | 2 | {bio,covid-19} |
+ piler | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
+ runcircos-gui | 2 | {bio} |
+ saint | 2 | {bio} |
+ sibsim4 | 2 | {bio,cloud} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
+ stacks | 2 | {bio} |
+ thesias | 2 | {covid-19,bio} |
+ tvc | 2 | {bio} |
+ zalign | 2 | {bio,cloud} |
+ atropos | 1 | {bio} |
+ biomaj3-cli | 1 | {cloud} |
blimps | 1 | {bio} |
+ canu | 1 | {bio} |
+ clonalframeml | 1 | {covid-19,bio} |
cmtk | 1 | {imaging} |
ctn | 1 | {imaging-dev} |
- cufflinks | 1 | {bio,cloud} |
+ delly | 1 | {bio,covid-19} |
+ dextractor | 1 | {covid-19,bio} |
+ embassy-domsearch | 1 | {bio,cloud} |
+ emmax | 1 | {bio} |
+ gatb-core | 1 | {bio} |
+ hinge | 1 | {bio} |
+ ipig | 1 | {bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
+ kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
+ libpal-java | 1 | {bio-dev} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libsbml | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
- microbegps | 1 | {bio} |
- plasmidid | 1 | {covid-19,bio} |
+ mhap | 1 | {bio,bio-ngs} |
+ phyutility | 1 | {bio,cloud} |
+ pique | 1 | {bio} |
+ placnet | 1 | {bio} |
+ plasmidseeker | 1 | {bio} |
+ pplacer | 1 | {covid-19,bio,bio-phylogeny} |
+ proalign | 1 | {bio-phylogeny,bio} |
python-wdlparse | 1 | {bio-dev} |
- shovill | 1 | {covid-19,bio} |
+ qcumber | 1 | {bio} |
+ rambo-k | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
+ rtax | 1 | {cloud,bio} |
+ sga | 1 | {bio} |
sift | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
+ skesa | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ spaln | 1 | {bio,covid-19} |
+ sprai | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
+ tophat-recondition | 1 | {covid-19,bio} |
+ trace2dbest | 1 | {bio} |
+ varna | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
@@ -146,6 +141,7 @@ Last-Update: Tue, 11 Jan 2022 01:42:03 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
+ cufflinks | 0 | {bio,cloud} |
cutesv | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
@@ -184,6 +180,7 @@ Last-Update: Tue, 11 Jan 2022 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
+ microbegps | 0 | {bio} |
milib | 0 | {covid-19,bio-dev} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
@@ -193,15 +190,18 @@ Last-Update: Tue, 11 Jan 2022 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ plasmidid | 0 | {covid-19,bio} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
+ shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
+ varscan | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
mssstest | -1 | {tools} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0dc119a2092b7a1edee0a91d09505aa1354105a4
--
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