Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ddeb3925 by Andreas Tille at 2022-01-14T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,70 +1,68 @@
-Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
+Last-Update: Fri, 14 Jan 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19} |
- orthanc | 105 | {covid-19,imaging,practice} |
- orthanc-wsi | 51 | {oncology,laboratory,practice,his,covid-19,imaging} |
- dicom3tools | 29 | {imaging} |
- htsjdk | 28 | {bio-dev} |
+ dcmtk | 183 | {covid-19,imaging} |
+ orthanc | 104 | {imaging,covid-19,practice} |
+ orthanc-wsi | 52 | {covid-19,his,imaging,practice,laboratory,oncology} |
+ dicom3tools | 30 | {imaging} |
amide | 27 | {imaging} |
dicomscope | 25 | {imaging} |
- orthanc-webviewer | 18 | {imaging} |
- dcm2niix | 16 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
+ dcm2niix | 18 | {imaging} |
+ orthanc-webviewer | 17 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- gdcm | 14 | {covid-19,imaging} |
- insighttoolkit4 | 14 | {imaging-dev} |
- ngs-sdk | 13 | {bio-dev} |
- invesalius | 12 | {imaging} |
+ gdcm | 14 | {imaging,covid-19} |
minc-tools | 12 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
adun.app | 11 | {bio} |
- gdcm | 11 | {imaging-dev} |
+ invesalius | 11 | {imaging} |
libminc | 11 | {imaging-dev} |
+ gdcm | 10 | {imaging-dev} |
nifticlib | 10 | {imaging-dev} |
openslide | 10 | {imaging} |
- orthanc-dicomweb | 10 | {imaging,covid-19} |
- pixelmed | 10 | {imaging} |
dicomnifti | 9 | {imaging} |
mia | 9 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
+ orthanc-dicomweb | 9 | {covid-19,imaging} |
+ pixelmed | 9 | {imaging} |
nifti2dicom | 8 | {imaging} |
nifticlib | 8 | {imaging} |
openslide | 8 | {imaging-dev} |
orthanc-postgresql | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
mrtrix3 | 7 | {imaging} |
plastimatch | 7 | {imaging} |
+ biojava-live | 6 | {bio-dev} |
lagan | 6 | {bio} |
- librg-utils-perl | 6 | {bio} |
nifti2dicom | 6 | {imaging} |
bart-view | 5 | {imaging} |
- elastix | 5 | {imaging} |
- king | 5 | {typesetting,imaging} |
+ king | 5 | {imaging,typesetting} |
libdivsufsort | 5 | {bio-dev} |
- ngs-sdk | 5 | {bio-dev} |
+ librg-utils-perl | 5 | {bio} |
nipype | 5 | {imaging,imaging-dev} |
obitools | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
+ elastix | 4 | {imaging} |
libncl | 4 | {bio} |
+ ngs-sdk | 4 | {bio-dev} |
orthanc-mysql | 4 | {imaging} |
pymia | 4 | {imaging-dev} |
- arden | 3 | {cloud,bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ salmon | 4 | {bio,covid-19} |
+ arden | 3 | {bio,cloud} |
bio-tradis | 3 | {bio-dev,bio} |
- embassy-domalign | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
ghmm | 3 | {bio} |
- jebl2 | 3 | {bio-dev} |
- melting | 3 | {bio,cloud} |
+ melting | 3 | {cloud,bio} |
orthanc-gdcm | 3 | {imaging} |
orthanc-python | 3 | {covid-19} |
- oscar | 3 | {data,tools,practice} |
+ oscar | 3 | {data,practice,tools} |
staden | 3 | {bio} |
- thesias | 3 | {covid-19,bio} |
+ thesias | 3 | {bio,covid-19} |
tracetuner | 3 | {bio} |
- treeview | 3 | {bio,bio-phylogeny} |
- anfo | 2 | {bio,cloud} |
+ treeview | 3 | {bio-phylogeny,bio} |
+ anfo | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
bitseq | 2 | {bio} |
brig | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
@@ -72,16 +70,17 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
embassy-domainatrix | 2 | {bio,cloud} |
fastml | 2 | {bio} |
getdata | 2 | {bio} |
+ jebl2 | 2 | {bio-dev} |
jellyfish1 | 2 | {bio} |
lamarc | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
papyrus | 2 | {imaging-dev} |
- pigx-rnaseq | 2 | {bio,covid-19} |
+ pigx-rnaseq | 2 | {covid-19,bio} |
piler | 2 | {bio} |
pscan-chip | 2 | {bio} |
runcircos-gui | 2 | {bio} |
saint | 2 | {bio} |
- sibsim4 | 2 | {bio,cloud} |
+ sibsim4 | 2 | {cloud,bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
stacks | 2 | {bio} |
tvc | 2 | {bio} |
@@ -90,11 +89,11 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
biomaj3-cli | 1 | {cloud} |
blimps | 1 | {bio} |
canu | 1 | {bio} |
- clonalframeml | 1 | {covid-19,bio} |
+ clonalframeml | 1 | {bio,covid-19} |
cmtk | 1 | {imaging} |
ctn | 1 | {imaging-dev} |
delly | 1 | {bio,covid-19} |
- dextractor | 1 | {covid-19,bio} |
+ dextractor | 1 | {bio,covid-19} |
embassy-domsearch | 1 | {bio,cloud} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio} |
@@ -110,18 +109,18 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
- phyutility | 1 | {bio,cloud} |
+ phyutility | 1 | {cloud,bio} |
pique | 1 | {bio} |
placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- pplacer | 1 | {covid-19,bio,bio-phylogeny} |
- proalign | 1 | {bio-phylogeny,bio} |
+ pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ proalign | 1 | {bio,bio-phylogeny} |
python-wdlparse | 1 | {bio-dev} |
qcumber | 1 | {bio} |
rambo-k | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
- rtax | 1 | {cloud,bio} |
+ rtax | 1 | {bio,cloud} |
sga | 1 | {bio} |
sift | 1 | {bio} |
skesa | 1 | {bio} |
@@ -131,9 +130,8 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
sprai | 1 | {bio} |
suitename | 1 | {bio} |
surankco | 1 | {bio} |
- tophat-recondition | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
- varna | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
@@ -141,7 +139,7 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {bio,cloud} |
+ cufflinks | 0 | {cloud,bio} |
cutesv | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
@@ -150,6 +148,7 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {bio-dev,covid-19} |
+ insighttoolkit5 | 0 | {imaging-dev} |
intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -164,7 +163,7 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
@@ -192,16 +191,17 @@ Last-Update: Fri, 14 Jan 2022 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
- varscan | 0 | {bio,covid-19} |
+ varna | 0 | {bio} |
+ varscan | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
mssstest | -1 | {tools} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ddeb3925b08831b188e241688a4bc544516f80cc
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ddeb3925b08831b188e241688a4bc544516f80cc
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220114/43e21526/attachment-0001.htm>