[med-svn] [Git][med-team/muscle][master] 22 commits: Muscle moved to Github and issued a rewritten release

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / muscle


Commits:
4547577e by Andreas Tille at 2022-01-17T14:08:27+01:00
Muscle moved to Github and issued a rewritten release

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434b7cef by Andreas Tille at 2022-01-17T14:08:42+01:00
routine-update: New upstream version

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70f06cb4 by Andreas Tille at 2022-01-17T14:08:43+01:00
New upstream version 5.1
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5ba59041 by Andreas Tille at 2022-01-17T14:08:44+01:00
Update upstream source from tag 'upstream/5.1'

Update to upstream version '5.1'
with Debian dir fb6b38da53eb8c3e613e2777d39fdf780c575f4d
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10d833b9 by Andreas Tille at 2022-01-17T14:08:44+01:00
routine-update: Standards-Version: 4.6.0

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07c6a4c0 by Andreas Tille at 2022-01-17T14:08:45+01:00
routine-update: debhelper-compat 13

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3aae91d2 by Andreas Tille at 2022-01-17T14:08:49+01:00
routine-update: Add salsa-ci file

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d0ba452b by Andreas Tille at 2022-01-17T14:08:49+01:00
routine-update: Rules-Requires-Root: no

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42a7ff45 by Andreas Tille at 2022-01-17T14:08:53+01:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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b4739553 by Andreas Tille at 2022-01-17T14:08:56+01:00
Add missing build dependency on dh addon.

Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html

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24fc37cb by Andreas Tille at 2022-01-17T14:09:02+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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afa3c32f by Andreas Tille at 2022-01-17T14:09:05+01:00
Fix day-of-week for changelog entry 3.52-1.

Changes-By: lintian-brush
Fixes: lintian: debian-changelog-has-wrong-day-of-week
See-also: https://lintian.debian.org/tags/debian-changelog-has-wrong-day-of-week.html

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27d1c177 by Andreas Tille at 2022-01-17T14:10:21+01:00
Fix source location

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80bdeaa1 by Andreas Tille at 2022-01-17T14:16:42+01:00
Adapt patches

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0111a922 by Andreas Tille at 2022-01-17T14:21:41+01:00
d/rules: New source directory

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be643456 by Andreas Tille at 2022-01-17T14:25:03+01:00
Fix install

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194e47f1 by Andreas Tille at 2022-01-17T14:25:28+01:00
No need to maintain debian/dirs

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9ee10fb3 by Andreas Tille at 2022-01-17T14:26:19+01:00
Do not provide outdated documentation

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9c3c4850 by Andreas Tille at 2022-01-17T14:59:44+01:00
No static linking

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8160995c by Andreas Tille at 2022-01-17T15:06:03+01:00
New help2man based manpage

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73cb0469 by Andreas Tille at 2022-01-17T15:12:54+01:00
Add NEWS to inform users about changed command line options
Make long description more verbose about new version

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6593233a by Andreas Tille at 2022-01-17T15:14:32+01:00
Upload to unstable

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27 changed files:

- + .gitattributes
- + .github/workflows/build_linux.yml
- + .github/workflows/build_osx.yml
- + .github/workflows/build_windows.yml
- + .gitignore
- + CONTRIBUTING.md
- + LICENSE
- − Makefile
- + README.md
- − aligngivenpath.cpp
- − aligngivenpathsw.cpp
- − aligntwomsas.cpp
- − aligntwoprofs.cpp
- − aln.cpp
- − anchors.cpp
- − bittraceback.cpp
- − blosum62.cpp
- − blosumla.cpp
- − clust.cpp
- − clust.h
- − cluster.cpp
- − cluster.h
- − clustset.h
- − clustsetdf.h
- − clustsetmsa.h
- − clwwt.cpp
- − color.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/muscle/-/compare/c4e2ef14496f8f238e532dd4c1b0434339baaac8...6593233aec4e68fa6a3165664ac9843e5ba77473

-- 
View it on GitLab: https://salsa.debian.org/med-team/muscle/-/compare/c4e2ef14496f8f238e532dd4c1b0434339baaac8...6593233aec4e68fa6a3165664ac9843e5ba77473
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