Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f9dbbcd9 by Andreas Tille at 2022-01-18T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,137 +1,142 @@
-Last-Update: Tue, 18 Jan 2022 01:42:04 +0000
+Last-Update: Tue, 18 Jan 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 181 | {covid-19,imaging} |
- orthanc | 105 | {imaging,covid-19,practice} |
- orthanc-wsi | 54 | {covid-19,his,imaging,practice,laboratory,oncology} |
- amide | 29 | {imaging} |
- dicom3tools | 29 | {imaging} |
- dicomscope | 28 | {imaging} |
- htsjdk | 25 | {bio-dev} |
- dcm2niix | 20 | {imaging} |
- orthanc-webviewer | 17 | {imaging} |
+ orthanc | 107 | {imaging,covid-19,practice} |
+ orthanc-wsi | 57 | {covid-19,his,imaging,practice,laboratory,oncology} |
+ amide | 31 | {imaging} |
+ dicom3tools | 30 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ htsjdk | 27 | {bio-dev} |
+ dcm2niix | 21 | {imaging} |
+ orthanc-webviewer | 18 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- gdcm | 13 | {imaging,covid-19} |
- invesalius | 13 | {imaging} |
- minc-tools | 11 | {imaging} |
- gdcm | 10 | {imaging-dev} |
+ invesalius | 15 | {imaging} |
+ gdcm | 14 | {imaging,covid-19} |
+ gdcm | 12 | {imaging-dev} |
+ minc-tools | 12 | {imaging} |
+ adun.app | 10 | {bio} |
+ dicomnifti | 10 | {imaging} |
ngs-sdk | 10 | {bio-dev} |
- adun.app | 9 | {bio} |
- dicomnifti | 9 | {imaging} |
+ openslide | 10 | {imaging} |
+ pixelmed | 10 | {imaging} |
+ lagan | 9 | {bio} |
libminc | 9 | {imaging-dev} |
mia | 9 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
+ nifti2dicom | 9 | {imaging} |
nifticlib | 9 | {imaging-dev} |
- openslide | 9 | {imaging} |
orthanc-dicomweb | 9 | {covid-19,imaging} |
- pixelmed | 9 | {imaging} |
- lagan | 8 | {bio} |
- nifti2dicom | 8 | {imaging} |
+ mrtrix3 | 8 | {imaging} |
+ nifticlib | 8 | {imaging} |
orthanc-postgresql | 8 | {imaging} |
- nifticlib | 7 | {imaging} |
- plastimatch | 7 | {imaging} |
- biojava-live | 6 | {bio-dev} |
- mrtrix3 | 6 | {imaging} |
- nifti2dicom | 6 | {imaging} |
+ plastimatch | 8 | {imaging} |
+ biojava-live | 7 | {bio-dev} |
+ nifti2dicom | 7 | {imaging} |
+ libdivsufsort | 6 | {bio-dev} |
+ libncl | 6 | {bio} |
+ obitools | 6 | {bio} |
openslide | 6 | {imaging-dev} |
- libdivsufsort | 5 | {bio-dev} |
+ dicompyler | 5 | {oncology} |
+ jebl2 | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
- obitools | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
- bart-view | 4 | {imaging} |
- dicompyler | 4 | {oncology} |
+ salmon | 5 | {bio,covid-19} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ arden | 4 | {bio,cloud} |
elastix | 4 | {imaging} |
- jebl2 | 4 | {bio-dev} |
+ embassy-domalign | 4 | {bio,cloud} |
+ getdata | 4 | {bio} |
+ ghmm | 4 | {bio} |
king | 4 | {imaging,typesetting} |
- libncl | 4 | {bio} |
- nipype | 4 | {imaging,imaging-dev} |
+ melting | 4 | {cloud,bio} |
oscar | 4 | {data,practice,tools} |
pymia | 4 | {imaging-dev} |
- treeview | 4 | {bio-phylogeny,bio} |
- arden | 3 | {bio,cloud} |
- embassy-domalign | 3 | {bio,cloud} |
- getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
- melting | 3 | {cloud,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ anfo | 3 | {cloud,bio} |
+ assemblytics | 3 | {bio} |
+ bart-view | 3 | {imaging} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ bio-tradis | 3 | {bio-dev,bio} |
+ bitseq | 3 | {bio} |
+ blimps | 3 | {bio} |
+ brig | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
+ fastml | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ nipype | 3 | {imaging,imaging-dev} |
orthanc-gdcm | 3 | {imaging} |
orthanc-python | 3 | {covid-19} |
- salmon | 3 | {bio,covid-19} |
- spread-phy | 3 | {bio,bio-phylogeny} |
+ phyutility | 3 | {cloud,bio} |
+ piler | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
+ sift | 3 | {bio} |
+ stacks | 3 | {bio} |
staden | 3 | {bio} |
thesias | 3 | {bio,covid-19} |
- anfo | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
- bio-tradis | 2 | {bio-dev,bio} |
- bitseq | 2 | {bio} |
- blimps | 2 | {bio} |
- brig | 2 | {bio} |
+ tracetuner | 3 | {bio} |
+ tvc | 3 | {bio} |
+ zalign | 3 | {bio,cloud} |
+ biomaj3-cli | 2 | {cloud} |
+ canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- clonalorigin | 2 | {bio} |
- embassy-domainatrix | 2 | {bio,cloud} |
- fastml | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
- lamarc | 2 | {bio} |
+ clonalframeml | 2 | {bio,covid-19} |
+ cmtk | 2 | {imaging} |
+ delly | 2 | {bio,covid-19} |
+ embassy-domsearch | 2 | {bio,cloud} |
+ gatb-core | 2 | {bio} |
+ hinge | 2 | {bio} |
+ ipig | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
+ libpal-java | 2 | {bio-dev} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ mauve-aligner | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
+ mhap | 2 | {bio,bio-ngs} |
ngs-sdk | 2 | {bio-dev} |
- phyutility | 2 | {cloud,bio} |
- piler | 2 | {bio} |
- pscan-chip | 2 | {bio} |
- runcircos-gui | 2 | {bio} |
- saint | 2 | {bio} |
- sibsim4 | 2 | {cloud,bio} |
- sift | 2 | {bio} |
- stacks | 2 | {bio} |
- tracetuner | 2 | {bio} |
- tvc | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
+ placnet | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
+ qcumber | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ rtax | 2 | {bio,cloud} |
+ seq-gen | 2 | {bio} |
+ sga | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ sprai | 2 | {bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ trace2dbest | 2 | {bio} |
atropos | 1 | {bio} |
- biomaj3-cli | 1 | {cloud} |
- canu | 1 | {bio} |
- clonalframeml | 1 | {bio,covid-19} |
- cmtk | 1 | {imaging} |
ctn | 1 | {imaging-dev} |
- delly | 1 | {bio,covid-19} |
+ cufflinks | 1 | {cloud,bio} |
dextractor | 1 | {bio,covid-19} |
- embassy-domsearch | 1 | {bio,cloud} |
emmax | 1 | {bio} |
- gatb-core | 1 | {bio} |
- hinge | 1 | {bio} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libpal-java | 1 | {bio-dev} |
- librdp-taxonomy-tree-java | 1 | {bio-dev} |
libsbml | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- mauve-aligner | 1 | {bio} |
- metaphlan2 | 1 | {bio} |
- mhap | 1 | {bio,bio-ngs} |
+ microbegps | 1 | {bio} |
+ mssstest | 1 | {tools} |
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
- placnet | 1 | {bio} |
- plasmidseeker | 1 | {bio} |
+ plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {covid-19,bio-phylogeny,bio} |
- proalign | 1 | {bio,bio-phylogeny} |
python-wdlparse | 1 | {bio-dev} |
- qcumber | 1 | {bio} |
- rambo-k | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rdp-classifier | 1 | {bio} |
- rtax | 1 | {bio,cloud} |
- seq-gen | 1 | {bio} |
- sga | 1 | {bio} |
skesa | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
- sprai | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
+ srf | 1 | {bio-dev} |
tophat-recondition | 1 | {bio,covid-19} |
- trace2dbest | 1 | {bio} |
+ varscan | 1 | {covid-19,bio} |
vienna-rna | 1 | {covid-19,bio} |
acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
@@ -139,7 +144,6 @@ Last-Update: Tue, 18 Jan 2022 01:42:04 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {cloud,bio} |
cutesv | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
@@ -179,7 +183,6 @@ Last-Update: Tue, 18 Jan 2022 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- microbegps | 0 | {bio} |
milib | 0 | {covid-19,bio-dev} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
@@ -190,7 +193,6 @@ Last-Update: Tue, 18 Jan 2022 01:42:04 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- plasmidid | 0 | {covid-19,bio} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
@@ -199,12 +201,9 @@ Last-Update: Tue, 18 Jan 2022 01:42:04 +0000
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
- srf | 0 | {bio-dev} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
- mssstest | -1 | {tools} |
tipp | -1 | {bio,covid-19} |
-(234 rows)
+(233 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f9dbbcd9436b2b722fcb63218a6304a5b27e5770
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f9dbbcd9436b2b722fcb63218a6304a5b27e5770
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