[med-svn] [Git][med-team/predictnls][master] 7 commits: Upstream download vanished

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / predictnls


Commits:
d1cd5e43 by Andreas Tille at 2022-01-18T19:03:00+01:00
Upstream download vanished

- - - - -
b403a376 by Andreas Tille at 2022-01-18T19:05:29+01:00
Stop using pp_popcon

- - - - -
833bfe45 by Andreas Tille at 2022-01-18T19:05:42+01:00
routine-update: Standards-Version: 4.6.0

- - - - -
28dfaf7b by Andreas Tille at 2022-01-18T19:05:42+01:00
routine-update: debhelper-compat 13

- - - - -
40494878 by Andreas Tille at 2022-01-18T19:05:46+01:00
Add missing build dependency on dh addon.

Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html

- - - - -
92658229 by Andreas Tille at 2022-01-18T19:05:48+01:00
Set upstream metadata fields: Bug-Submit (from ./configure).

Changes-By: lintian-brush

- - - - -
cdf47176 by Andreas Tille at 2022-01-18T19:06:41+01:00
routine-update: Ready to upload to unstable

- - - - -


6 changed files:

- debian/changelog
- debian/control
- + debian/patches/no_pp-popcon.patch
- + debian/patches/series
- debian/upstream/metadata
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+predictnls (1.0.20-7) unstable; urgency=medium
+
+  * Upstream download vanished
+  * Stop using pp_popcon
+  * Standards-Version: 4.6.0 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Add missing build dependency on dh addon.
+  * Set upstream metadata fields: Bug-Submit (from ./configure).
+
+ -- Andreas Tille <tille at debian.org>  Tue, 18 Jan 2022 19:05:54 +0100
+
 predictnls (1.0.20-6) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -5,8 +5,8 @@ Uploaders: Julia Ertl <ertlj at in.tum.de>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12)
-Standards-Version: 4.5.0
+Build-Depends: debhelper-compat (= 13), debhelper
+Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/predictnls
 Vcs-Git: https://salsa.debian.org/med-team/predictnls.git
 Homepage: https://rostlab.org/services/predictNLS/


=====================================
debian/patches/no_pp-popcon.patch
=====================================
@@ -0,0 +1,26 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 18 Jan 2022 19:02:40 +0100
+Description: Stop using pp_popcon
+
+--- a/predictnls
++++ b/predictnls
+@@ -35,9 +35,6 @@ BEGIN {
+ 	$pkgdatadir = glob( $config->val('predictnls', 'pkgdatadir') );
+ }
+ 
+-# popularity contest
+-if( system('pp_popcon_cnt', '-p', 'predictnls') == -1 ){ warn("The Rost Lab recommends you install the pp-popularity-contest package that provides pp_popcon_cnt:\n\nsudo apt-get install pp-popularity-contest\n"); }
+-
+ #$scr=$0;
+ our $debug = $config->val('predictnls', 'debug');
+ &iniDef();
+--- a/predictnls.spec
++++ b/predictnls.spec
+@@ -7,7 +7,6 @@ Group: Applications/Science
+ URL: https://rostlab.informatik.tu-muenchen.de/owiki/index.php/PredictNLS
+ Source0: %{name}-%{version}.tar.gz
+ BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root
+-Requires: pp-popularity-contest
+ 
+ %description
+  PredictNLS predicts that your protein is nuclear or finds out whether your potential NLS is found in our database. 


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+no_pp-popcon.patch


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,4 @@
+Bug-Submit: https://rostlab.org/bugzilla3/enter_bug.cgi?product=predictnls
 Reference:
  - Author: Murat Cokol and Rajesh Nair and Burkhard Rost
    Title: 'Finding nuclear localization signals.'


=====================================
debian/watch
=====================================
@@ -1,3 +1,4 @@
-version=3
-ftp://rostlab.org/predictnls/predictnls-([0-9.]+).tar.gz
+version=4
+opts=dversionmangle=s/.*/0.No-Site/ \
+https://people.debian.org/~eriberto/ FakeWatchNoUpstreamSiteForThisPackage-(\d\S+)\.gz
 



View it on GitLab: https://salsa.debian.org/med-team/predictnls/-/compare/b16b059abb77db428699b4bade1dd41a57636222...cdf47176d2c29bf511408f78dc3ea18310592e32

-- 
View it on GitLab: https://salsa.debian.org/med-team/predictnls/-/compare/b16b059abb77db428699b4bade1dd41a57636222...cdf47176d2c29bf511408f78dc3ea18310592e32
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