[med-svn] [Git][med-team/norsnet][master] 8 commits: Stop using pp_popcon

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / norsnet


Commits:
c58dd60e by Andreas Tille at 2022-01-18T20:36:11+01:00
Stop using pp_popcon

- - - - -
460247a3 by Andreas Tille at 2022-01-18T20:37:34+01:00
Upstream download vanished

- - - - -
b845d84d by Andreas Tille at 2022-01-18T20:37:55+01:00
routine-update: Standards-Version: 4.6.0

- - - - -
0e4fd9b1 by Andreas Tille at 2022-01-18T20:37:55+01:00
routine-update: debhelper-compat 13

- - - - -
03625490 by Andreas Tille at 2022-01-18T20:37:59+01:00
routine-update: Add salsa-ci file

- - - - -
a3571d4e by Andreas Tille at 2022-01-18T20:37:59+01:00
routine-update: Rules-Requires-Root: no

- - - - -
89a8d7ba by Andreas Tille at 2022-01-18T20:38:01+01:00
Add missing build dependency on dh addon.

Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html

- - - - -
5fa7b7be by Andreas Tille at 2022-01-18T20:39:13+01:00
routine-update: Ready to upload to unstable

- - - - -


6 changed files:

- debian/changelog
- debian/control
- + debian/patches/no_pp-popcon.patch
- + debian/patches/series
- + debian/salsa-ci.yml
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+norsnet (1.0.17-7) unstable; urgency=medium
+
+  * Stop using pp_popcon
+  * Upstream download vanished
+  * Standards-Version: 4.6.0 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Add missing build dependency on dh addon.
+
+ -- Andreas Tille <tille at debian.org>  Tue, 18 Jan 2022 20:38:16 +0100
+
 norsnet (1.0.17-6) unstable; urgency=medium
 
   [ Chris Lamb ]


=====================================
debian/control
=====================================
@@ -5,11 +5,12 @@ Uploaders: Christian Mertes <mertes at in.tum.de>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12)
-Standards-Version: 4.4.1
+Build-Depends: debhelper-compat (= 13), debhelper
+Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/norsnet
 Vcs-Git: https://salsa.debian.org/med-team/norsnet.git
 Homepage: https://www.rostlab.org/owiki/index.php/Norsnet
+Rules-Requires-Root: no
 
 Package: norsnet
 Architecture: all
@@ -20,7 +21,6 @@ Recommends: blast2,
             librg-utils-perl,
             profphd,
             profbval
-Suggests: pp-popularity-contest
 Description: tool to identify unstructured loops in proteins
  NORSnet can distinguish between very long contiguous segments with
  non-regular secondary structure (NORS regions) and well-folded proteins.


=====================================
debian/patches/no_pp-popcon.patch
=====================================
@@ -0,0 +1,16 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 18 Jan 2022 19:02:40 +0100
+Description: Stop using pp_popcon
+
+--- a/norsnet
++++ b/norsnet
+@@ -2,9 +2,6 @@
+ use File::Temp;
+ use Carp qw(cluck croak);
+ 
+-# popularity contest
+-if( system('pp_popcon_cnt', '-p', 'norsnet') == -1 ){ warn("The Rost Lab recommends you install the pp-popularity-contest package that provides pp_popcon_cnt:\n\nsudo apt-get install pp-popularity-contest\n"); }
+-
+ $DEF_MODE=1;
+ if (@ARGV<1)  {
+ 	#                   0       1      2          3          4               5            6      7


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+no_pp-popcon.patch


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/watch
=====================================
@@ -1,2 +1,4 @@
-version=3
-ftp://rostlab.org/norsnet/norsnet-([0-9.]+)\.tar\.gz
+version=4
+opts=dversionmangle=s/.*/0.No-Site/ \
+https://people.debian.org/~eriberto/ FakeWatchNoUpstreamSiteForThisPackage-(\d\S+)\.gz
+



View it on GitLab: https://salsa.debian.org/med-team/norsnet/-/compare/378f092cef0cfcd2a5f6a71dee156f624ebf5f10...5fa7b7bebacb8e7ade53f6175f6fbd1979b1c47f

-- 
View it on GitLab: https://salsa.debian.org/med-team/norsnet/-/compare/378f092cef0cfcd2a5f6a71dee156f624ebf5f10...5fa7b7bebacb8e7ade53f6175f6fbd1979b1c47f
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