[med-svn] [Git][med-team/metastudent][master] 9 commits: Upstream download vanished
Andreas Tille (@tille)
gitlab at salsa.debian.org
Thu Jan 20 10:26:50 GMT 2022
Andreas Tille pushed to branch master at Debian Med / metastudent
Commits:
80847ed0 by Andreas Tille at 2022-01-20T10:19:57+01:00
Upstream download vanished
- - - - -
e5e423ec by Andreas Tille at 2022-01-20T10:55:18+01:00
routine-update: Standards-Version: 4.6.0
- - - - -
552c75f7 by Andreas Tille at 2022-01-20T10:55:18+01:00
routine-update: debhelper-compat 13
- - - - -
4f3172ef by Andreas Tille at 2022-01-20T10:55:24+01:00
routine-update: Add salsa-ci file
- - - - -
28e55cd3 by Andreas Tille at 2022-01-20T10:55:24+01:00
routine-update: Rules-Requires-Root: no
- - - - -
bffe5775 by Andreas Tille at 2022-01-20T10:55:27+01:00
Add missing build dependency on dh addon.
Changes-By: lintian-brush
Fixes: lintian: missing-build-dependency-for-dh_-command
See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html
- - - - -
d1189362 by Andreas Tille at 2022-01-20T10:55:30+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
- - - - -
8eefd628 by Andreas Tille at 2022-01-20T11:11:43+01:00
Cleanup d/copyright from duplicates
- - - - -
78539a4a by Andreas Tille at 2022-01-20T11:16:07+01:00
Upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/salsa-ci.yml
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,8 +1,18 @@
-metastudent (2.0.1-9) UNRELEASED; urgency=medium
+metastudent (2.0.1-9) unstable; urgency=medium
+ * Team upload.
* Do not ask for installation of pp-popularity-contest
-
- -- Andreas Tille <tille at debian.org> Mon, 01 Feb 2021 14:05:36 +0100
+ * Upstream download vanished
+ * Standards-Version: 4.6.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Add missing build dependency on dh addon.
+ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+ Repository-Browse.
+ * Cleanup d/copyright from duplicates
+
+ -- Andreas Tille <tille at debian.org> Thu, 20 Jan 2022 11:11:50 +0100
metastudent (2.0.1-8) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -4,15 +4,16 @@ Uploaders: Tobias Hamp <hampt at rostlab.org>,
Laszlo Kajan <lkajan at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12)
+Build-Depends: debhelper-compat (= 13), debhelper
Build-Depends-Indep: dh-python,
python3-all,
javahelper,
default-jdk
-Standards-Version: 4.4.1
+Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/metastudent
Vcs-Git: https://salsa.debian.org/med-team/metastudent.git
Homepage: https://rostlab.org/owiki/index.php/Metastudent
+Rules-Requires-Root: no
Package: metastudent
Architecture: all
@@ -22,11 +23,11 @@ Depends: ${misc:Depends},
python3,
ncbi-blast+-legacy,
default-jre,
- libgo-perl (>= 0.15-3),
+ libgo-perl,
libipc-run-perl,
libgraphviz-perl,
libfile-chdir-perl,
- metastudent-data (>= 2.0.0)
+ metastudent-data
Description: predictor of Gene Ontology terms from protein sequence
Often, only the sequence of a protein is known, but
not its functions. Metastudent will try to predict
=====================================
debian/copyright
=====================================
@@ -1,7 +1,7 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: metastudent
Upstream-Contact: Tobias Hamp <hampt at rostlab.org>
-Source: ftp://rostlab.org/metastudent/
+Source: https://github.com/Rostlab/MetaStudent
Files: *
Copyright: 2010-2015, Tobias Hamp <hampt at rostlab.org>
@@ -16,19 +16,29 @@ Copyright: 2010, Ariane Böhm
2010, Yannick Mahlich
License: GPL-2+
-Files: metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java
+Files: metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java
+ metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java
+ metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java
+ metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java
+ metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java
+ metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java
+ metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java
+ metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java
Copyright: 2010, Thomas Hopf
License: GPL-2+
-Files: metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java metastudentPkg/lib/groupB/pp2/tools/RMethods.java metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java
+Files: metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java
+ metastudentPkg/lib/groupB/pp2/tools/RMethods.java
Copyright: 2010, Stefanie Kaufmann
License: GPL-2+
-Files: metastudentPkg/lib/groupB/pp2/go/Relations.java metastudentPkg/lib/groupB/pp2/go/DAG.java metastudentPkg/lib/groupB/pp2/go/Relations.java metastudentPkg/lib/groupB/pp2/go/DAG.java
+Files: metastudentPkg/lib/groupB/pp2/go/Relations.java
+ metastudentPkg/lib/groupB/pp2/go/DAG.java
Copyright: 2010, Mark Heron
License: GPL-2+
-Files: metastudentPkg/lib/groupC/treehandler.pl metastudentPkg/lib/groupC/treehandler_new.pl
+Files: metastudentPkg/lib/groupC/treehandler.pl
+ metastudentPkg/lib/groupC/treehandler_new.pl
Copyright: 2010, Peter Hoenigschmid
License: GPL-2+
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/Rostlab/MetaStudent/issues
+Bug-Submit: https://github.com/Rostlab/MetaStudent/issues/new
Reference:
- Author: >
Tobias Hamp and Rebecca Kassner and Stefan Seemayer and
@@ -23,3 +25,5 @@ Registry:
Entry: metastudent
- Name: SciCrunch
Entry: NA
+Repository: https://github.com/Rostlab/MetaStudent.git
+Repository-Browse: https://github.com/Rostlab/MetaStudent
=====================================
debian/watch
=====================================
@@ -1,5 +1,6 @@
-version=3
-opts="pgpsigurlmangle=s/$/.asc/" ftp://rostlab.org/metastudent/metastudent[-]([0-9.]+)\.orig\.tar\.gz debian uupdate
+version=4
+opts=dversionmangle=s/.*/0.No-Site/ \
+https://people.debian.org/~eriberto/ FakeWatchNoUpstreamSiteForThisPackage-(\d\S+)\.gz
# Asked for release tags
# https://github.com/Rostlab/MetaStudent/issues/13
View it on GitLab: https://salsa.debian.org/med-team/metastudent/-/compare/81b541e8f2fcd71da97ae9aba408a4056372c383...78539a4a1cfccc8ab65d8c655e704057b389b7c1
--
View it on GitLab: https://salsa.debian.org/med-team/metastudent/-/compare/81b541e8f2fcd71da97ae9aba408a4056372c383...78539a4a1cfccc8ab65d8c655e704057b389b7c1
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220120/1036e133/attachment-0001.htm>
More information about the debian-med-commit
mailing list