[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Thu Jan 20 13:42:25 GMT 2022



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
a46b311e by Andreas Tille at 2022-01-20T13:42:19+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,70 +1,71 @@
-Last-Update: Thu, 20 Jan 2022 01:42:03 +0000
+Last-Update: Thu, 20 Jan 2022 13:42:04 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
  dcmtk                         |    183 | {covid-19,imaging}                                  | 
- orthanc                       |    107 | {imaging,covid-19,practice}                         | 
- orthanc-wsi                   |     56 | {covid-19,his,imaging,practice,laboratory,oncology} | 
- dicom3tools                   |     31 | {imaging}                                           | 
- dicomscope                    |     31 | {imaging}                                           | 
- amide                         |     28 | {imaging}                                           | 
+ orthanc                       |    106 | {imaging,practice,covid-19}                         | 
+ orthanc-wsi                   |     56 | {his,practice,covid-19,imaging,laboratory,oncology} | 
+ dicom3tools                   |     30 | {imaging}                                           | 
+ dicomscope                    |     29 | {imaging}                                           | 
  htsjdk                        |     28 | {bio-dev}                                           | 
- dcm2niix                      |     22 | {imaging}                                           | 
+ amide                         |     27 | {imaging}                                           | 
+ dcm2niix                      |     21 | {imaging}                                           | 
  orthanc-webviewer             |     19 | {imaging}                                           | 
- invesalius                    |     15 | {imaging}                                           | 
- gdcm                          |     14 | {imaging,covid-19}                                  | 
- gnumed-server                 |     14 | {covid-19,practice}                                 | 
+ gnumed-server                 |     14 | {practice,covid-19}                                 | 
+ invesalius                    |     14 | {imaging}                                           | 
+ gdcm                          |     13 | {imaging,covid-19}                                  | 
  gdcm                          |     12 | {imaging-dev}                                       | 
- minc-tools                    |     12 | {imaging}                                           | 
+ minc-tools                    |     11 | {imaging}                                           | 
  adun.app                      |     10 | {bio}                                               | 
- dicomnifti                    |     10 | {imaging}                                           | 
  ngs-sdk                       |     10 | {bio-dev}                                           | 
- openslide                     |     10 | {imaging}                                           | 
- pixelmed                      |     10 | {imaging}                                           | 
  lagan                         |      9 | {bio}                                               | 
  libminc                       |      9 | {imaging-dev}                                       | 
- mia                           |      9 | {imaging}                                           | 
  ngs-sdk                       |      9 | {bio-dev}                                           | 
  nifti2dicom                   |      9 | {imaging}                                           | 
  nifticlib                     |      9 | {imaging-dev}                                       | 
- orthanc-dicomweb              |      9 | {covid-19,imaging}                                  | 
- mrtrix3                       |      8 | {imaging}                                           | 
- nifticlib                     |      8 | {imaging}                                           | 
+ openslide                     |      9 | {imaging}                                           | 
+ orthanc-dicomweb              |      9 | {imaging,covid-19}                                  | 
+ pixelmed                      |      9 | {imaging}                                           | 
+ biojava-live                  |      8 | {bio-dev}                                           | 
+ dicomnifti                    |      8 | {imaging}                                           | 
+ mia                           |      8 | {imaging}                                           | 
  orthanc-postgresql            |      8 | {imaging}                                           | 
- plastimatch                   |      8 | {imaging}                                           | 
- biojava-live                  |      7 | {bio-dev}                                           | 
+ mrtrix3                       |      7 | {imaging}                                           | 
  nifti2dicom                   |      7 | {imaging}                                           | 
+ nifticlib                     |      7 | {imaging}                                           | 
+ plastimatch                   |      7 | {imaging}                                           | 
  libdivsufsort                 |      6 | {bio-dev}                                           | 
  libncl                        |      6 | {bio}                                               | 
+ librg-utils-perl              |      6 | {bio}                                               | 
  obitools                      |      6 | {bio}                                               | 
  openslide                     |      6 | {imaging-dev}                                       | 
  dicompyler                    |      5 | {oncology}                                          | 
  jebl2                         |      5 | {bio-dev}                                           | 
- librg-utils-perl              |      5 | {bio}                                               | 
  orthanc-mysql                 |      5 | {imaging}                                           | 
- salmon                        |      5 | {bio,covid-19}                                      | 
+ salmon                        |      5 | {covid-19,bio}                                      | 
  treeview                      |      5 | {bio-phylogeny,bio}                                 | 
- arden                         |      4 | {bio,cloud}                                         | 
+ arden                         |      4 | {cloud,bio}                                         | 
+ bio-tradis                    |      4 | {bio,bio-dev}                                       | 
  elastix                       |      4 | {imaging}                                           | 
- embassy-domalign              |      4 | {bio,cloud}                                         | 
+ embassy-domalign              |      4 | {cloud,bio}                                         | 
  getdata                       |      4 | {bio}                                               | 
  ghmm                          |      4 | {bio}                                               | 
- king                          |      4 | {imaging,typesetting}                               | 
  melting                       |      4 | {cloud,bio}                                         | 
  pymia                         |      4 | {imaging-dev}                                       | 
  spread-phy                    |      4 | {bio,bio-phylogeny}                                 | 
+ staden                        |      4 | {bio}                                               | 
  anfo                          |      3 | {cloud,bio}                                         | 
  assemblytics                  |      3 | {bio}                                               | 
  bart-view                     |      3 | {imaging}                                           | 
- beast-mcmc                    |      3 | {bio-phylogeny,bio}                                 | 
- bio-tradis                    |      3 | {bio-dev,bio}                                       | 
+ beast-mcmc                    |      3 | {bio,bio-phylogeny}                                 | 
  bitseq                        |      3 | {bio}                                               | 
  blimps                        |      3 | {bio}                                               | 
  brig                          |      3 | {bio}                                               | 
  clonalorigin                  |      3 | {bio}                                               | 
- embassy-domainatrix           |      3 | {bio,cloud}                                         | 
+ embassy-domainatrix           |      3 | {cloud,bio}                                         | 
  fastml                        |      3 | {bio}                                               | 
  jellyfish1                    |      3 | {bio}                                               | 
+ king                          |      3 | {typesetting,imaging}                               | 
  lamarc                        |      3 | {bio}                                               | 
  nipype                        |      3 | {imaging,imaging-dev}                               | 
  orthanc-gdcm                  |      3 | {imaging}                                           | 
@@ -79,22 +80,22 @@ Last-Update: Thu, 20 Jan 2022 01:42:03 +0000
  sibsim4                       |      3 | {cloud,bio}                                         | 
  sift                          |      3 | {bio}                                               | 
  stacks                        |      3 | {bio}                                               | 
- staden                        |      3 | {bio}                                               | 
- thesias                       |      3 | {bio,covid-19}                                      | 
+ thesias                       |      3 | {covid-19,bio}                                      | 
  tracetuner                    |      3 | {bio}                                               | 
  tvc                           |      3 | {bio}                                               | 
- zalign                        |      3 | {bio,cloud}                                         | 
+ zalign                        |      3 | {cloud,bio}                                         | 
  biomaj3-cli                   |      2 | {cloud}                                             | 
  canu                          |      2 | {bio}                                               | 
- cat-bat                       |      2 | {bio,covid-19}                                      | 
+ cat-bat                       |      2 | {covid-19,bio}                                      | 
  clonalframeml                 |      2 | {bio,covid-19}                                      | 
  cmtk                          |      2 | {imaging}                                           | 
  delly                         |      2 | {bio,covid-19}                                      | 
- embassy-domsearch             |      2 | {bio,cloud}                                         | 
+ embassy-domsearch             |      2 | {cloud,bio}                                         | 
  gatb-core                     |      2 | {bio}                                               | 
  hinge                         |      2 | {bio}                                               | 
  ipig                          |      2 | {bio}                                               | 
  jmodeltest                    |      2 | {bio-phylogeny,bio}                                 | 
+ libbio-mage-utils-perl        |      2 | {bio-dev}                                           | 
  libpal-java                   |      2 | {bio-dev}                                           | 
  librdp-taxonomy-tree-java     |      2 | {bio-dev}                                           | 
  mauve-aligner                 |      2 | {bio}                                               | 
@@ -118,11 +119,10 @@ Last-Update: Thu, 20 Jan 2022 01:42:03 +0000
  trace2dbest                   |      2 | {bio}                                               | 
  atropos                       |      1 | {bio}                                               | 
  ctn                           |      1 | {imaging-dev}                                       | 
- cufflinks                     |      1 | {cloud,bio}                                         | 
- dextractor                    |      1 | {bio,covid-19}                                      | 
+ cufflinks                     |      1 | {bio,cloud}                                         | 
+ dextractor                    |      1 | {covid-19,bio}                                      | 
  emmax                         |      1 | {bio}                                               | 
  kmerresistance                |      1 | {bio}                                               | 
- libbio-mage-utils-perl        |      1 | {bio-dev}                                           | 
  libctapimkt                   |      1 | {practice}                                          | 
  libsbml                       |      1 | {bio-dev}                                           | 
  libvistaio                    |      1 | {imaging-dev}                                       | 
@@ -130,14 +130,14 @@ Last-Update: Thu, 20 Jan 2022 01:42:03 +0000
  mssstest                      |      1 | {tools}                                             | 
  pigx-rnaseq                   |      1 | {covid-19,bio}                                      | 
  pique                         |      1 | {bio}                                               | 
- plasmidid                     |      1 | {covid-19,bio}                                      | 
- pplacer                       |      1 | {covid-19,bio-phylogeny,bio}                        | 
+ plasmidid                     |      1 | {bio,covid-19}                                      | 
+ pplacer                       |      1 | {bio,bio-phylogeny,covid-19}                        | 
  python-wdlparse               |      1 | {bio-dev}                                           | 
  skesa                         |      1 | {bio}                                               | 
- spaln                         |      1 | {bio,covid-19}                                      | 
+ spaln                         |      1 | {covid-19,bio}                                      | 
  srf                           |      1 | {bio-dev}                                           | 
- tophat-recondition            |      1 | {bio,covid-19}                                      | 
- varscan                       |      1 | {covid-19,bio}                                      | 
+ tophat-recondition            |      1 | {covid-19,bio}                                      | 
+ varscan                       |      1 | {bio,covid-19}                                      | 
  vienna-rna                    |      1 | {covid-19,bio}                                      | 
  acedb                         |      0 | {bio,cloud}                                         | 
  bambamc                       |      0 | {bio-dev}                                           | 
@@ -168,9 +168,9 @@ Last-Update: Thu, 20 Jan 2022 01:42:03 +0000
  libgenome                     |      0 | {bio-dev}                                           | 
  libgkarrays                   |      0 | {bio-dev}                                           | 
  libhmsbeagle                  |      0 | {bio-dev}                                           | 
- libics                        |      0 | {covid-19,imaging-dev}                              | 
+ libics                        |      0 | {imaging-dev,covid-19}                              | 
  libjloda-java                 |      0 | {bio-dev}                                           | 
- libmaus2                      |      0 | {covid-19,bio-dev}                                  | 
+ libmaus2                      |      0 | {bio-dev,covid-19}                                  | 
  libmems                       |      0 | {bio-dev}                                           | 
  libmialm                      |      0 | {imaging-dev}                                       | 
  libmuscle                     |      0 | {bio-dev}                                           | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a46b311e83c702dd97588ea26b88d2eb94963885

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a46b311e83c702dd97588ea26b88d2eb94963885
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