Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
fd22c4c7 by Andreas Tille at 2022-01-22T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,20 +1,20 @@
-Last-Update: Sat, 22 Jan 2022 01:42:04 +0000
+Last-Update: Sat, 22 Jan 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {covid-19,imaging} |
- orthanc | 104 | {imaging,practice,covid-19} |
- orthanc-wsi | 55 | {his,practice,covid-19,imaging,laboratory,oncology} |
+ dcmtk | 182 | {covid-19,imaging} |
+ orthanc | 104 | {imaging,covid-19,practice} |
+ orthanc-wsi | 56 | {practice,laboratory,covid-19,imaging,his,oncology} |
dicom3tools | 29 | {imaging} |
- dicomscope | 29 | {imaging} |
htsjdk | 29 | {bio-dev} |
- amide | 28 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ amide | 26 | {imaging} |
dcm2niix | 21 | {imaging} |
- orthanc-webviewer | 19 | {imaging} |
+ orthanc-webviewer | 20 | {imaging} |
+ invesalius | 15 | {imaging} |
gnumed-server | 14 | {practice,covid-19} |
- invesalius | 14 | {imaging} |
+ gdcm | 12 | {covid-19,imaging} |
gdcm | 12 | {imaging-dev} |
- gdcm | 12 | {imaging,covid-19} |
adun.app | 11 | {bio} |
minc-tools | 11 | {imaging} |
lagan | 9 | {bio} |
@@ -40,36 +40,37 @@ Last-Update: Sat, 22 Jan 2022 01:42:04 +0000
dicompyler | 5 | {oncology} |
jebl2 | 5 | {bio-dev} |
libdivsufsort | 5 | {bio-dev} |
+ nipype | 5 | {imaging-dev,imaging} |
orthanc-mysql | 5 | {imaging} |
- salmon | 5 | {covid-19,bio} |
+ salmon | 5 | {bio,covid-19} |
treeview | 5 | {bio-phylogeny,bio} |
- arden | 4 | {cloud,bio} |
+ arden | 4 | {bio,cloud} |
bio-tradis | 4 | {bio,bio-dev} |
elastix | 4 | {imaging} |
embassy-domalign | 4 | {cloud,bio} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
- melting | 4 | {cloud,bio} |
+ melting | 4 | {bio,cloud} |
pymia | 4 | {imaging-dev} |
- spread-phy | 4 | {bio,bio-phylogeny} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
anfo | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
bart-view | 3 | {imaging} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
bitseq | 3 | {bio} |
blimps | 3 | {bio} |
brig | 3 | {bio} |
clonalorigin | 3 | {bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
fastml | 3 | {bio} |
jellyfish1 | 3 | {bio} |
king | 3 | {typesetting,imaging} |
lamarc | 3 | {bio} |
- nipype | 3 | {imaging,imaging-dev} |
+ libsbml | 3 | {bio-dev} |
orthanc-gdcm | 3 | {imaging} |
orthanc-python | 3 | {covid-19} |
- oscar | 3 | {data,practice,tools} |
- phyutility | 3 | {cloud,bio} |
+ oscar | 3 | {data,tools,practice} |
+ phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
pscan-chip | 3 | {bio} |
rambo-k | 3 | {bio} |
@@ -79,35 +80,34 @@ Last-Update: Sat, 22 Jan 2022 01:42:04 +0000
sift | 3 | {bio} |
stacks | 3 | {bio} |
staden | 3 | {bio} |
- thesias | 3 | {covid-19,bio} |
+ thesias | 3 | {bio,covid-19} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
zalign | 3 | {cloud,bio} |
biomaj3-cli | 2 | {cloud} |
canu | 2 | {bio} |
- cat-bat | 2 | {covid-19,bio} |
- clonalframeml | 2 | {bio,covid-19} |
+ cat-bat | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {covid-19,bio} |
cmtk | 2 | {imaging} |
- delly | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
embassy-domsearch | 2 | {cloud,bio} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
- libsbml | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
+ mhap | 2 | {bio-ngs,bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
+ rtax | 2 | {cloud,bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
soapaligner | 2 | {bio} |
@@ -119,26 +119,27 @@ Last-Update: Sat, 22 Jan 2022 01:42:04 +0000
atropos | 1 | {bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
- dextractor | 1 | {covid-19,bio} |
+ dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
+ libgenome | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
microbegps | 1 | {bio} |
mssstest | 1 | {tools} |
ngs-sdk | 1 | {bio-dev} |
- pigx-rnaseq | 1 | {covid-19,bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
- plasmidid | 1 | {bio,covid-19} |
+ plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {bio,bio-phylogeny,covid-19} |
python-wdlparse | 1 | {bio-dev} |
skesa | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
srf | 1 | {bio-dev} |
- tophat-recondition | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {covid-19,bio} |
- acedb | 0 | {bio,cloud} |
+ acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -151,7 +152,7 @@ Last-Update: Sat, 22 Jan 2022 01:42:04 +0000
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
insighttoolkit5 | 0 | {imaging-dev} |
intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
@@ -164,10 +165,9 @@ Last-Update: Sat, 22 Jan 2022 01:42:04 +0000
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
libchado-perl | 0 | {bio-dev} |
- libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -193,14 +193,14 @@ Last-Update: Sat, 22 Jan 2022 01:42:04 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
tipp | 0 | {bio,covid-19} |
varna | 0 | {bio} |
xdffileio | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fd22c4c7995f2144971774f83aaf3511926f6836
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fd22c4c7995f2144971774f83aaf3511926f6836
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