[med-svn] [Git][med-team/parsnp][master] 2 commits: d/control: add dependency to python3-pyabpoa.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / parsnp


Commits:
15f94c37 by Étienne Mollier at 2022-07-09T21:09:59+02:00
d/control: add dependency to python3-pyabpoa.

- - - - -
3fc5e10f by Étienne Mollier at 2022-07-09T21:11:19+02:00
update changelog, with note to wait for abpoa.

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,21 +1,14 @@
 parsnp (1.7.3+dfsg-1) UNRELEASED; urgency=medium
 
-TODO: upload missing pyabpoa, otherwise new parsnp version fails to run with:
-Test 1: With GenBank Annotations
-Traceback (most recent call last):
-  File "/usr/bin/parsnp", line 20, in <module>
-    import parsnp.extend as ext
-  File "/usr/lib/python3/dist-packages/parsnp/extend.py", line 18, in <module>
-    import pyabpoa as pa
-ModuleNotFoundError: No module named 'pyabpoa'
-Missing dependency seems to be: https://github.com/yangao07/abPOA
+TODO: wait for abpoa to pass through NEW.
   * d/control: add myself to uploaders.
   * New upstream version
   * Standards-Version: 4.6.1 (routine-update)
   * Delete typos.patch: applied upstream.
   * Refresh proper_calls_to_tools.patch and py3-parsnp-libs.patch.
+  * d/control: add dependency to python3-pyabpoa.
 
- -- Étienne Mollier <emollier at debian.org>  Thu, 07 Jul 2022 22:24:45 +0200
+ -- Étienne Mollier <emollier at debian.org>  Sat, 09 Jul 2022 21:10:31 +0200
 
 parsnp (1.7.2+dfsg-1) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -7,6 +7,7 @@ Priority: optional
 Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3-all-dev,
+               python3-pyabpoa,
                python3-setuptools,
                cython3,
                libmuscle-dev
@@ -23,6 +24,7 @@ Depends: ${shlibs:Depends},
          ${python3:Depends},
          python3-biopython,
          python3-numpy,
+         python3-pyabpoa,
          fasttree,
          harvest-tools,
          mummer,



View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/compare/81b421918ee73c4178e9fbe503c69293f10e8bfe...3fc5e10fe70df8b2eff8ac33253e3f479a738f93

-- 
View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/compare/81b421918ee73c4178e9fbe503c69293f10e8bfe...3fc5e10fe70df8b2eff8ac33253e3f479a738f93
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