[med-svn] [Git][med-team/hyphy][master] 5 commits: New upstream version 2.5.40+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / hyphy


Commits:
baa2765e by Étienne Mollier at 2022-07-15T09:59:56+02:00
New upstream version 2.5.40+dfsg
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7bdeaf86 by Étienne Mollier at 2022-07-15T09:59:56+02:00
routine-update: New upstream version

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4adece77 by Étienne Mollier at 2022-07-15T10:00:08+02:00
Update upstream source from tag 'upstream/2.5.40+dfsg'

Update to upstream version '2.5.40+dfsg'
with Debian dir 3f8631ff59910ca47fce633bf5090a434e0ef394
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8dab418b by Étienne Mollier at 2022-07-15T10:07:55+02:00
d/*.lintian-overrides: refresh overrides to new convention.

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a69cab1e by Étienne Mollier at 2022-07-15T10:08:42+02:00
ready to upload to unstable.

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30 changed files:

- CMakeLists.txt
- debian/changelog
- debian/hyphy-common.lintian-overrides
- debian/hyphy-mpi.lintian-overrides
- debian/hyphy-pt.lintian-overrides
- res/TemplateBatchFiles/GARD.bf
- res/TemplateBatchFiles/MSS-selector-2.bf
- res/TemplateBatchFiles/MSS-selector.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- src/core/batchlan.cpp
- src/core/batchlanruntime.cpp
- src/core/calcnode.cpp
- src/core/formula.cpp
- src/core/global_things.cpp
- src/core/hbl_env.cpp
- src/core/include/formula.h
- src/core/include/hbl_env.h
- src/core/include/matrix.h
- src/core/include/operation.h
- src/core/likefunc.cpp
- src/core/matrix.cpp
- src/core/operation.cpp
- src/core/tree.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/702955742141f085191463dd350b1ab4ab6f867b...a69cab1e90d3708841e7523967204296be7bc1fa

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/702955742141f085191463dd350b1ab4ab6f867b...a69cab1e90d3708841e7523967204296be7bc1fa
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