Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
55c3dcd7 by Andreas Tille at 2022-07-15T13:42:20+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,59 @@
-Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
+Last-Update: Fri, 15 Jul 2022 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 170 | {covid-19,imaging} |
- orthanc | 99 | {imaging,covid-19,practice} |
- orthanc-wsi | 46 | {covid-19,imaging,his,laboratory,oncology,practice} |
+ dcmtk | 173 | {covid-19,imaging} |
+ orthanc | 98 | {imaging,covid-19,practice} |
+ orthanc-wsi | 45 | {covid-19,imaging,his,laboratory,oncology,practice} |
node-shiny-server | 43 | {covid-19,epi} |
- amide | 29 | {imaging} |
- dicomscope | 19 | {imaging} |
+ amide | 31 | {imaging} |
+ dicomscope | 18 | {imaging} |
invesalius | 15 | {imaging} |
orthanc-webviewer | 14 | {imaging} |
gnumed-server | 12 | {practice,covid-19} |
mrtrix3 | 11 | {imaging} |
adun.app | 9 | {bio} |
orthanc-dicomweb | 9 | {covid-19,imaging} |
- pixelmed | 9 | {imaging} |
+ pixelmed | 8 | {imaging} |
librg-utils-perl | 7 | {bio} |
plastimatch | 7 | {imaging} |
mia | 6 | {imaging} |
+ nipype | 6 | {imaging-dev,imaging} |
+ biojava-live | 5 | {bio-dev} |
+ ghmm | 5 | {bio} |
king | 5 | {typesetting,imaging} |
libminc | 5 | {imaging-dev} |
- nipype | 5 | {imaging-dev,imaging} |
orthanc-postgresql | 5 | {imaging} |
- biojava-live | 4 | {bio-dev} |
+ salmon | 5 | {bio,covid-19} |
dicompyler | 4 | {oncology} |
- ghmm | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
+ obitools | 4 | {bio} |
orthanc-gdcm | 4 | {imaging} |
oscar | 4 | {tools,practice,data} |
- salmon | 4 | {bio,covid-19} |
treeview | 4 | {bio,bio-phylogeny} |
+ bio-tradis | 3 | {bio,bio-dev} |
blimps | 3 | {bio} |
getdata | 3 | {bio} |
+ libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
- obitools | 3 | {bio} |
piler | 3 | {bio} |
pymia | 3 | {imaging-dev} |
sift | 3 | {bio} |
+ stacks | 3 | {bio} |
staden | 3 | {bio} |
anfo | 2 | {cloud,bio} |
bart-view | 2 | {imaging} |
- bio-tradis | 2 | {bio,bio-dev} |
+ bitseq | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
+ clonalorigin | 2 | {bio} |
cmtk | 2 | {imaging} |
dextractor | 2 | {covid-19,bio} |
elastix | 2 | {imaging} |
+ embassy-domainatrix | 2 | {bio,cloud} |
emmax | 2 | {bio} |
gatb-core | 2 | {bio} |
lamarc | 2 | {bio} |
- libncl | 2 | {bio} |
+ mauve-aligner | 2 | {bio} |
melting | 2 | {bio,cloud} |
opencfu | 2 | {laboratory} |
orthanc-mysql | 2 | {imaging} |
@@ -56,31 +61,29 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
phyutility | 2 | {bio,cloud} |
placnet | 2 | {bio} |
python-wdlparse | 2 | {bio-dev} |
+ rdp-alignment | 2 | {bio} |
runcircos-gui | 2 | {bio} |
saint | 2 | {bio} |
sibsim4 | 2 | {cloud,bio} |
skesa | 2 | {bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
- stacks | 2 | {bio} |
+ surankco | 2 | {bio} |
tophat-recondition | 2 | {covid-19,bio} |
+ tracetuner | 2 | {bio} |
+ tvc | 2 | {bio} |
acedb | 1 | {bio,cloud} |
arden | 1 | {bio,cloud} |
assemblytics | 1 | {bio} |
beast-mcmc | 1 | {bio,bio-phylogeny} |
- bitseq | 1 | {bio} |
brig | 1 | {bio} |
canu | 1 | {bio} |
clonalframeml | 1 | {covid-19,bio} |
- clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- cufflinks | 1 | {cloud,bio} |
delly | 1 | {bio,covid-19} |
- embassy-domainatrix | 1 | {bio,cloud} |
embassy-domsearch | 1 | {bio,cloud} |
emperor | 1 | {bio} |
fastml | 1 | {bio} |
hinge | 1 | {bio} |
- insighttoolkit5 | 1 | {imaging-dev} |
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
@@ -91,7 +94,6 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
libpal-java | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
orthanc-python | 1 | {covid-19} |
@@ -101,8 +103,8 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
proalign | 1 | {bio,bio-phylogeny} |
pscan-chip | 1 | {bio} |
+ qcumber | 1 | {bio} |
rambo-k | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
rtax | 1 | {cloud,bio} |
sga | 1 | {bio} |
@@ -110,18 +112,17 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
soapsnp | 1 | {bio} |
sprai | 1 | {bio} |
suitename | 1 | {bio} |
- surankco | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
- tracetuner | 1 | {bio} |
- tvc | 1 | {bio} |
varna | 1 | {bio} |
+ varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
zalign | 1 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
+ cufflinks | 0 | {cloud,bio} |
cutesv | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
embassy-domalign | 0 | {bio,cloud} |
@@ -129,6 +130,7 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {bio-dev,covid-19} |
+ insighttoolkit5 | 0 | {imaging-dev} |
libbigwig | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
@@ -168,7 +170,6 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
provean | 0 | {bio} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
- qcumber | 0 | {bio} |
resfinder-db | 0 | {bio} |
rockhopper | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -178,7 +179,6 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
tipp | 0 | {covid-19,bio} |
- varscan | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
libmaus2 | -1 | {bio-dev,covid-19} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,37 +1,37 @@
-Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
+Last-Update: Fri, 15 Jul 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 2936 | {viewing} |
- sympy | 2041 | {physics,nanoscale-physics} |
- armadillo | 184 | {mathematics-dev} |
- python-pyqtgraph | 135 | {viewing} |
- suitesparse | 121 | {numericalcomputation,mathematics-dev} |
+ gts | 2923 | {viewing} |
+ sympy | 2011 | {physics,nanoscale-physics} |
+ armadillo | 189 | {mathematics-dev} |
+ python-pyqtgraph | 129 | {viewing} |
+ suitesparse | 123 | {numericalcomputation,mathematics-dev} |
atlas | 99 | {mathematics-dev} |
nltk | 95 | {linguistics} |
- arpack | 56 | {mathematics-dev} |
- cypari2 | 53 | {mathematics-dev} |
- imview | 46 | {viewing} |
- arduino-mk | 41 | {robotics} |
+ arpack | 59 | {mathematics-dev} |
+ cypari2 | 51 | {mathematics-dev} |
+ imview | 45 | {viewing} |
fftw | 41 | {mathematics-dev,physics-dev,meteorology-dev} |
+ arduino-mk | 39 | {robotics} |
rubiks | 34 | {geometry,mathematics} |
flintqs | 31 | {mathematics} |
pyzo | 26 | {numericalcomputation} |
- sketch | 25 | {typesetting} |
+ sketch | 26 | {typesetting} |
bossa | 23 | {devices} |
+ feedgnuplot | 21 | {viewing} |
ntl | 21 | {mathematics-dev} |
+ ppl | 21 | {numericalcomputation} |
cernlib | 20 | {highenergy-physics} |
- feedgnuplot | 20 | {viewing} |
gts | 20 | {viewing-dev} |
- ppl | 20 | {numericalcomputation} |
+ flann | 19 | {mathematics-dev,engineering-dev} |
+ guidata | 19 | {dataacquisition-dev} |
+ guiqwt | 19 | {numericalcomputation,viewing} |
geg | 18 | {viewing} |
- guidata | 18 | {dataacquisition-dev} |
- guiqwt | 18 | {numericalcomputation,viewing} |
+ libmatio | 18 | {mathematics-dev} |
fftw | 17 | {physics-dev,meteorology-dev,mathematics-dev} |
- flann | 17 | {mathematics-dev,engineering-dev} |
- libmatio | 17 | {mathematics-dev} |
mathgl | 17 | {viewing} |
- neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
+ neuron | 17 | {neuroscience-modeling,highenergy-physics,simulations} |
cernlib | 13 | {highenergy-physics-dev} |
coinor-symphony | 13 | {numericalcomputation,mathematics,logic} |
opencascade | 13 | {simulations} |
@@ -44,39 +44,40 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
getdp | 11 | {simulations,mathematics,engineering} |
gfsview | 11 | {viewing} |
apophenia | 10 | {statistics} |
- auto-07p | 10 | {mathematics} |
cliquer | 10 | {mathematics} |
debian-science | 10 | {nanoscale-physics,mathematics,economics,physics,machine-learning} |
jeuclid | 10 | {typesetting,viewing} |
+ neuron | 10 | {highenergy-physics-dev} |
+ picosat | 10 | {logic} |
scalapack | 10 | {nanoscale-physics-dev} |
+ auto-07p | 9 | {mathematics} |
code-saturne | 9 | {engineering-dev,mathematics-dev} |
debian-science | 9 | {physics,nanoscale-physics,economics,machine-learning} |
+ dune-uggrid | 9 | {mathematics-dev} |
lxi-tools | 9 | {engineering,dataacquisition} |
- matlab-support | 9 | {numericalcomputation,mathematics} |
- neuron | 9 | {highenergy-physics-dev} |
- picosat | 9 | {logic} |
+ pcl | 9 | {robotics-dev} |
tango | 9 | {dataacquisition} |
debian-science | 8 | {neuroscience-cognitive,machine-learning} |
debian-science | 8 | {economics,physics,statistics,nanoscale-physics} |
- dune-uggrid | 8 | {mathematics-dev} |
ipe-tools | 8 | {typesetting} |
libcgns | 8 | {engineering} |
libitpp | 8 | {engineering-dev,mathematics-dev} |
lrcalc | 8 | {mathematics-dev} |
- pcl | 8 | {robotics-dev} |
+ matlab-support | 8 | {numericalcomputation,mathematics} |
polylib | 8 | {mathematics} |
scram | 8 | {engineering} |
+ teem | 8 | {imageanalysis} |
toulbar2 | 8 | {numericalcomputation,physics,logic,mathematics} |
uctodata | 8 | {linguistics} |
coinmp | 7 | {mathematics-dev,numericalcomputation,logic} |
iml | 7 | {mathematics-dev} |
libcgns | 7 | {engineering-dev} |
libm4rie | 7 | {mathematics-dev} |
+ libvigraimpex | 7 | {imageanalysis-dev,machine-learning} |
libzn-poly | 7 | {mathematics-dev} |
psurface | 7 | {numericalcomputation} |
python-escript | 7 | {simulations,numericalcomputation,engineering} |
syrthes | 7 | {engineering} |
- teem | 7 | {imageanalysis} |
ucto | 7 | {linguistics} |
alberta | 6 | {engineering-dev} |
cliquer | 6 | {mathematics-dev} |
@@ -85,7 +86,6 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
gf2x | 6 | {mathematics-dev} |
libhomfly | 6 | {mathematics-dev} |
libmatheval | 6 | {mathematics} |
- libvigraimpex | 6 | {imageanalysis-dev,machine-learning} |
lrcalc | 6 | {mathematics} |
opencascade | 6 | {simulations} |
qwtplot3d | 6 | {viewing-dev} |
@@ -94,7 +94,6 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
ros-rosconsole | 6 | {robotics-dev} |
tango | 6 | {dataacquisition} |
code-saturne | 5 | {mathematics-dev,engineering-dev} |
- jhdf | 5 | {engineering} |
libgetdata | 5 | {dataacquisition} |
libmatheval | 5 | {mathematics-dev} |
morse-simulator | 5 | {robotics} |
@@ -105,22 +104,22 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
dune-istl | 4 | {mathematics-dev} |
dxflib | 4 | {engineering-dev} |
etsf-io | 4 | {nanoscale-physics,physics} |
- hpcc | 4 | {numericalcomputation,distributedcomputing} |
- jhdf | 4 | {engineering-dev} |
- libccp4 | 4 | {nanoscale-physics-dev} |
+ jhdf | 4 | {engineering} |
newmat | 4 | {mathematics-dev} |
openstereogram | 4 | {tools} |
simbody | 4 | {robotics-dev} |
urdfdom-headers | 4 | {robotics-dev} |
apertium-streamparser | 3 | {linguistics} |
- apophenia | 3 | {statistics} |
clipper | 3 | {nanoscale-physics-dev} |
- debian-science | 3 | {psychophysics} |
- debian-science | 3 | {economics} |
debian-science | 3 | {neuroscience-cognitive} |
+ debian-science | 3 | {economics} |
+ debian-science | 3 | {psychophysics} |
dimbl | 3 | {linguistics} |
frog | 3 | {linguistics} |
+ hpcc | 3 | {numericalcomputation,distributedcomputing} |
irstlm | 3 | {linguistics} |
+ jhdf | 3 | {engineering-dev} |
+ libccp4 | 3 | {nanoscale-physics-dev} |
libgetdata | 3 | {dataacquisition-dev} |
libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
looptools | 3 | {highenergy-physics} |
@@ -132,21 +131,22 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
sardana | 3 | {dataacquisition} |
taurus | 3 | {dataacquisition} |
timbl | 3 | {linguistics} |
+ apophenia | 2 | {statistics} |
cbflib | 2 | {nanoscale-physics-dev} |
cernlib | 2 | {highenergy-physics} |
coda | 2 | {meteorology} |
- debian-science | 2 | {physics} |
debian-science | 2 | {electrophysiology} |
+ debian-science | 2 | {physics} |
dune-localfunctions | 2 | {mathematics-dev} |
gemmlowp | 2 | {mathematics-dev} |
harp | 2 | {meteorology} |
ipe-tools | 2 | {typesetting} |
+ liblbfgs | 2 | {mathematics-dev} |
mbtserver | 2 | {linguistics} |
openctm | 2 | {physics-dev} |
openturns | 2 | {meteorology-dev,mathematics-dev,statistics,engineering,mathematics,meteorology} |
ros-opencv-apps | 2 | {robotics} |
sparskit | 2 | {mathematics-dev} |
- tango | 2 | {dataacquisition-dev} |
timblserver | 2 | {linguistics} |
x13as | 2 | {economics} |
cbflib | 1 | {nanoscale-physics} |
@@ -158,7 +158,6 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
fastjet | 1 | {highenergy-physics-dev} |
itsol | 1 | {mathematics-dev} |
libgetdata | 1 | {dataacquisition-dev} |
- liblbfgs | 1 | {mathematics-dev} |
liborigin2 | 1 | {viewing-dev} |
looptools | 1 | {highenergy-physics-dev} |
metis-edf | 1 | {engineering,numericalcomputation} |
@@ -168,6 +167,7 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
openturns | 1 | {meteorology-dev,engineering-dev,mathematics-dev} |
quadrule | 1 | {mathematics-dev} |
tamuanova | 1 | {statistics} |
+ tango | 1 | {dataacquisition-dev} |
apertium-bel-rus | 0 | {linguistics} |
apertium-hin | 0 | {linguistics} |
apertium-mlt-ara | 0 | {linguistics} |
@@ -182,9 +182,9 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
asl | 0 | {physics-dev} |
calculix-ccx-doc | 0 | {numericalcomputation,engineering,simulations} |
calculix-ccx-test | 0 | {engineering,simulations,numericalcomputation} |
+ cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {physics,highenergy-physics} |
- cernlib | 0 | {highenergy-physics-dev} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
@@ -228,8 +228,8 @@ Last-Update: Fri, 15 Jul 2022 01:42:04 +0000
sagemath-database-polytopes | 0 | {mathematics} |
siscone | 0 | {highenergy-physics-dev} |
slicot | 0 | {engineering-dev,robotics-dev} |
- ssm | 0 | {nanoscale-physics} |
ssm | 0 | {nanoscale-physics-dev} |
+ ssm | 0 | {nanoscale-physics} |
tachyon | 0 | {mathematics} |
tango | 0 | {dataacquisition} |
triangle | 0 | {physics-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/55c3dcd755b5f0db40f8c1a55a114210149d5ad2
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