[med-svn] [Git][med-team/bedops][master] 12 commits: New upstream version 2.4.40+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / bedops


Commits:
b277b532 by Nilesh Patra at 2021-10-24T13:27:26+05:30
New upstream version 2.4.40+dfsg
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3888d415 by Andreas Tille at 2022-07-18T10:00:42+02:00
New upstream version 2.4.41+dfsg
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69960425 by Andreas Tille at 2022-07-18T10:00:42+02:00
routine-update: New upstream version

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e8f8db14 by Andreas Tille at 2022-07-18T10:00:48+02:00
Update upstream source from tag 'upstream/2.4.41+dfsg'

Update to upstream version '2.4.41+dfsg'
with Debian dir f2bc04fc738f6d682a2332e992858e4be4070857
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ac6ab5ac by Andreas Tille at 2022-07-18T10:00:48+02:00
routine-update: Standards-Version: 4.6.1

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03236794 by Andreas Tille at 2022-07-18T10:00:48+02:00
routine-update: debhelper-compat 13

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d3668c90 by Andreas Tille at 2022-07-18T10:00:50+02:00
routine-update: Add salsa-ci file

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fd50f300 by Andreas Tille at 2022-07-18T10:00:50+02:00
routine-update: Rules-Requires-Root: no

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da74e288 by Andreas Tille at 2022-07-18T10:00:54+02:00
Set upstream metadata fields: Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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5865f439 by Andreas Tille at 2022-07-18T10:00:59+02:00
Apply multi-arch hints.
+ bedops-doc: Add Multi-Arch: foreign.

Changes-By: apply-multiarch-hints

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e7846941 by Andreas Tille at 2022-07-18T10:29:03+02:00
Update patches

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1986acf3 by Andreas Tille at 2022-07-18T10:33:31+02:00
Upload to unstable

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30 changed files:

- .github/workflows/main.yml
- CHANGELOG.md
- CITATION.cff
- Makefile
- README.md
- applications/bed/bedextract/src/ExtractRows.cpp
- applications/bed/bedmap/src/Bedmap.cpp
- applications/bed/bedmap/src/Input.hpp
- applications/bed/bedmap/src/TDefs.hpp
- applications/bed/bedops/src/BedPadReader.hpp
- applications/bed/bedops/src/Bedops.cpp
- applications/bed/bedops/src/Input.hpp
- applications/bed/bedops/test/TestPlan.xml
- applications/bed/closestfeats/src/BedReader.hpp
- applications/bed/closestfeats/src/ClosestFeature.cpp
- applications/bed/closestfeats/src/Input.hpp
- applications/bed/closestfeats/src/Printers.hpp
- applications/bed/conversion/src/convert2bed.c
- applications/bed/conversion/src/convert2bed.h
- applications/bed/conversion/src/wrappers/gtf2bed
- applications/bed/conversion/src/wrappers/gtf2starch
- applications/bed/sort-bed/src/CheckSort.cpp
- applications/bed/sort-bed/src/Sort.cpp
- applications/bed/sort-bed/src/SortDetails.cpp
- applications/bed/sort-bed/src/Structures.hpp
- applications/bed/sort-bed/src/update-sort-bed-migrate-candidates.py
- applications/bed/sort-bed/src/update-sort-bed-slurm.py
- applications/bed/sort-bed/src/update-sort-bed-starch-slurm.py
- applications/bed/starch/src/Makefile.darwin
- applications/bed/starch/src/starch-diff.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bedops/-/compare/34d056ed6a6346941120d896926d4370b4a35ff3...1986acf3ac492576d3e48900fcc6968dca85ac2b

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View it on GitLab: https://salsa.debian.org/med-team/bedops/-/compare/34d056ed6a6346941120d896926d4370b4a35ff3...1986acf3ac492576d3e48900fcc6968dca85ac2b
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