[med-svn] [Git][med-team/python-cogent][master] 7 commits: New upstream version 2022.5.25a1+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-cogent


Commits:
77d46ea5 by Andreas Tille at 2022-07-29T11:56:06+02:00
New upstream version 2022.5.25a1+dfsg
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1b5ea2b4 by Andreas Tille at 2022-07-29T11:56:06+02:00
routine-update: New upstream version

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18aa5956 by Andreas Tille at 2022-07-29T11:56:10+02:00
Update upstream source from tag 'upstream/2022.5.25a1+dfsg'

Update to upstream version '2022.5.25a1+dfsg'
with Debian dir 5d7597fe665a3719eb38406bbcc6e1011336dc67
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2802e0d0 by Andreas Tille at 2022-07-29T11:56:10+02:00
routine-update: Standards-Version: 4.6.1

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93476523 by Andreas Tille at 2022-07-29T12:23:18+02:00
Refresh patches

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1a2ff79b by Andreas Tille at 2022-07-29T16:29:58+02:00
Build-Depends: python3-plotly <!nocheck>

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9d960990 by Andreas Tille at 2022-07-29T16:35:07+02:00
Upload to unstable

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30 changed files:

- .github/dependabot.yml
- .github/workflows/testing_develop.yml
- .gitignore
- .hgignore
- .hgtags
- − .readthedocs.yml
- README.md
- − c3dev-environment.yml
- changelog.md
- debian/changelog
- debian/control
- debian/patches/remove-jupyter-sphinx.patch
- debian/patches/sphinx.patch
- doc/Makefile
- + doc/api/__init__/cogent3.__init__.load_seq.rst
- doc/api/index.rst
- doc/app/align-codon.rst
- doc/app/align-nucleotide.rst
- doc/app/align-protein.rst
- doc/app/dstore.rst
- doc/app/evo-ancestral-states.rst
- doc/app/evo-dt-nuc-model.rst
- doc/app/evo-extract-model-stats.rst
- doc/app/evo-hypothesis.rst
- doc/app/evo-model-timehet.rst
- doc/app/evo-model-with-tree.rst
- doc/app/evo-model.rst
- doc/app/evo-natsel_neutral.rst
- doc/app/evo-natsel_sitehet.rst
- doc/app/evo-natsel_timehet.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/3e59ca1978eb4ae67c327f56b20b653188075079...9d9609904f8dc14e04a9c7286410f1bb307f79a1

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View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/3e59ca1978eb4ae67c327f56b20b653188075079...9d9609904f8dc14e04a9c7286410f1bb307f79a1
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