Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
462e9acc by Andreas Tille at 2022-06-02T13:42:37+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,47 +1,47 @@
-Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
+Last-Update: Thu, 02 Jun 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 167 | {imaging,covid-19} |
- orthanc | 94 | {covid-19,imaging,practice} |
- orthanc-wsi | 49 | {covid-19,oncology,imaging,his,laboratory,practice} |
- node-shiny-server | 36 | {covid-19,epi} |
+ dcmtk | 171 | {imaging,covid-19} |
+ orthanc | 95 | {practice,imaging,covid-19} |
+ orthanc-wsi | 49 | {oncology,covid-19,imaging,his,practice,laboratory} |
+ node-shiny-server | 37 | {epi,covid-19} |
amide | 27 | {imaging} |
dicomscope | 26 | {imaging} |
nipype | 26 | {imaging-dev,imaging} |
+ dicom3tools | 17 | {imaging} |
orthanc-webviewer | 17 | {imaging} |
- dicom3tools | 16 | {imaging} |
- gnumed-server | 12 | {covid-19,practice} |
- orthanc-dicomweb | 11 | {covid-19,imaging} |
+ gnumed-server | 12 | {practice,covid-19} |
+ orthanc-dicomweb | 11 | {imaging,covid-19} |
biojava-live | 10 | {bio-dev} |
gdcm | 10 | {imaging-dev} |
- gdcm | 10 | {imaging,covid-19} |
+ gdcm | 10 | {covid-19,imaging} |
+ invesalius | 10 | {imaging} |
mrtrix3 | 10 | {imaging} |
- adun.app | 9 | {bio} |
- invesalius | 9 | {imaging} |
+ adun.app | 8 | {bio} |
orthanc-postgresql | 8 | {imaging} |
+ pixelmed | 8 | {imaging} |
jebl2 | 7 | {bio-dev} |
libminc | 7 | {imaging-dev} |
librg-utils-perl | 7 | {bio} |
- pixelmed | 7 | {imaging} |
canu | 6 | {bio} |
obitools | 6 | {bio} |
plastimatch | 6 | {imaging} |
salmon | 6 | {covid-19,bio} |
- treeview | 6 | {bio-phylogeny,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
bio-tradis | 5 | {bio,bio-dev} |
dicompyler | 5 | {oncology} |
+ elastix | 5 | {imaging} |
getdata | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
orthanc-gdcm | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
pymia | 5 | {imaging-dev} |
- sibsim4 | 5 | {bio,cloud} |
+ sibsim4 | 5 | {cloud,bio} |
cmtk | 4 | {imaging} |
- elastix | 4 | {imaging} |
fastml | 4 | {bio} |
ghmm | 4 | {bio} |
- king | 4 | {typesetting,imaging} |
+ king | 4 | {imaging,typesetting} |
lamarc | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
@@ -56,17 +56,17 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
spread-phy | 4 | {bio-phylogeny,bio} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
- anfo | 3 | {bio,cloud} |
+ anfo | 3 | {cloud,bio} |
arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
bart-view | 3 | {imaging} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-cli | 3 | {cloud} |
bitseq | 3 | {bio} |
blimps | 3 | {bio} |
brig | 3 | {bio} |
cat-bat | 3 | {bio,covid-19} |
- clonalframeml | 3 | {bio,covid-19} |
+ clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
delly | 3 | {bio,covid-19} |
embassy-domainatrix | 3 | {bio,cloud} |
@@ -97,10 +97,10 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
trace2dbest | 3 | {bio} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ zalign | 3 | {bio,cloud} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {bio,cloud} |
- dextractor | 2 | {covid-19,bio} |
+ dextractor | 2 | {bio,covid-19} |
embassy-domalign | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
emboss-explorer | 2 | {bio} |
@@ -113,12 +113,12 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
opencfu | 2 | {laboratory} |
orthanc-python | 2 | {covid-19} |
papyrus | 2 | {imaging-dev} |
- pigx-rnaseq | 2 | {bio,covid-19} |
+ pigx-rnaseq | 2 | {covid-19,bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
pscan-chip | 2 | {bio} |
skesa | 2 | {bio} |
- thesias | 2 | {bio,covid-19} |
+ thesias | 2 | {covid-19,bio} |
tophat-recondition | 2 | {covid-19,bio} |
acedb | 1 | {bio,cloud} |
bambamc | 1 | {bio-dev} |
@@ -143,14 +143,14 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
mssstest | 1 | {tools} |
pbseqlib | 1 | {bio-dev} |
pique | 1 | {bio} |
- plasmidid | 1 | {bio,covid-19} |
- pplacer | 1 | {bio,covid-19,bio-phylogeny} |
- python-seqcluster | 1 | {bio-dev,covid-19} |
+ plasmidid | 1 | {covid-19,bio} |
+ pplacer | 1 | {bio,bio-phylogeny,covid-19} |
+ python-seqcluster | 1 | {covid-19,bio-dev} |
seq-gen | 1 | {bio} |
srf | 1 | {bio-dev} |
tipp | 1 | {covid-19,bio} |
varna | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
+ varscan | 1 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
@@ -172,7 +172,7 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
@@ -183,11 +183,11 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
sbmltoolbox | 0 | {bio-dev} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
- libmaus2 | -1 | {bio-dev,covid-19} |
+ libmaus2 | -1 | {covid-19,bio-dev} |
malt | -1 | {bio} |
megan-ce | -1 | {bio} |
rockhopper | -1 | {bio} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,78 +1,79 @@
-Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
+Last-Update: Thu, 02 Jun 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 2959 | {viewing} |
- sympy | 1792 | {physics,nanoscale-physics} |
+ gts | 2979 | {viewing} |
+ sympy | 1784 | {physics,nanoscale-physics} |
armadillo | 203 | {mathematics-dev} |
- suitesparse | 163 | {mathematics-dev,numericalcomputation} |
+ suitesparse | 162 | {mathematics-dev,numericalcomputation} |
python-pyqtgraph | 129 | {viewing} |
- nltk | 94 | {linguistics} |
- atlas | 88 | {mathematics-dev} |
+ atlas | 90 | {mathematics-dev} |
+ nltk | 89 | {linguistics} |
arpack | 69 | {mathematics-dev} |
- pyzo | 52 | {numericalcomputation} |
- cypari2 | 51 | {mathematics-dev} |
- arduino-mk | 45 | {robotics} |
- imview | 45 | {viewing} |
+ cypari2 | 52 | {mathematics-dev} |
+ pyzo | 51 | {numericalcomputation} |
+ arduino-mk | 47 | {robotics} |
+ imview | 44 | {viewing} |
scalapack | 41 | {nanoscale-physics-dev} |
- rubiks | 40 | {geometry,mathematics} |
- eclib | 35 | {mathematics} |
- fftw | 35 | {mathematics-dev,meteorology-dev,physics-dev} |
- flintqs | 34 | {mathematics} |
+ rubiks | 38 | {geometry,mathematics} |
+ fftw | 36 | {mathematics-dev,meteorology-dev,physics-dev} |
+ eclib | 34 | {mathematics} |
+ flintqs | 33 | {mathematics} |
sketch | 27 | {typesetting} |
- cernlib | 23 | {highenergy-physics} |
bossa | 22 | {devices} |
- feedgnuplot | 21 | {viewing} |
- libmatio | 21 | {mathematics-dev} |
- geg | 19 | {viewing} |
- gts | 19 | {viewing-dev} |
- ntl | 19 | {mathematics-dev} |
- flann | 18 | {mathematics-dev,engineering-dev} |
- auto-07p | 17 | {mathematics} |
+ feedgnuplot | 22 | {viewing} |
+ cernlib | 21 | {highenergy-physics} |
+ geg | 21 | {viewing} |
+ libmatio | 20 | {mathematics-dev} |
+ auto-07p | 19 | {mathematics} |
+ flann | 19 | {mathematics-dev,engineering-dev} |
+ gts | 18 | {viewing-dev} |
+ ntl | 18 | {mathematics-dev} |
fftw | 17 | {mathematics-dev,meteorology-dev,physics-dev} |
- guidata | 17 | {dataacquisition-dev} |
- cernlib | 16 | {highenergy-physics-dev} |
+ guidata | 16 | {dataacquisition-dev} |
neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
- gfsview | 15 | {viewing} |
- guiqwt | 15 | {numericalcomputation,viewing} |
+ python-escript | 16 | {numericalcomputation,engineering,simulations} |
picosat | 15 | {logic} |
+ ppl | 15 | {numericalcomputation} |
vitables | 15 | {numericalcomputation} |
+ cernlib | 14 | {highenergy-physics-dev} |
coinor-symphony | 14 | {mathematics,logic,numericalcomputation} |
+ form | 14 | {mathematics} |
+ gfsview | 14 | {viewing} |
+ guiqwt | 14 | {numericalcomputation,viewing} |
libm4ri | 14 | {mathematics-dev} |
- ppl | 14 | {numericalcomputation} |
- python-escript | 14 | {numericalcomputation,engineering,simulations} |
+ matlab-support | 14 | {mathematics,numericalcomputation} |
+ ros-ros-environment | 14 | {robotics-dev} |
+ getdp | 13 | {engineering,simulations,mathematics} |
mathgl | 13 | {viewing} |
- matlab-support | 13 | {mathematics,numericalcomputation} |
opencascade | 13 | {simulations} |
+ polylib | 13 | {mathematics} |
rheolef | 13 | {mathematics} |
- ros-ros-environment | 13 | {robotics-dev} |
- form | 12 | {mathematics} |
- getdp | 12 | {engineering,simulations,mathematics} |
- opticalraytracer | 12 | {physics} |
- polylib | 12 | {mathematics} |
- apophenia | 11 | {statistics} |
- debian-science | 11 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
+ apophenia | 12 | {statistics} |
+ debian-science | 12 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
+ debian-science | 11 | {physics,nanoscale-physics,economics,statistics} |
lxi-tools | 11 | {engineering,dataacquisition} |
neuron | 11 | {highenergy-physics-dev} |
- debian-science | 10 | {physics,nanoscale-physics,economics,statistics} |
+ opticalraytracer | 11 | {physics} |
+ dune-uggrid | 10 | {mathematics-dev} |
+ ipe-tools | 10 | {typesetting} |
pcl | 10 | {robotics-dev} |
syrthes | 10 | {engineering} |
- uctodata | 10 | {linguistics} |
+ alberta | 9 | {engineering-dev} |
cliquer | 9 | {mathematics} |
- ipe-tools | 9 | {typesetting} |
+ debian-science | 9 | {machine-learning,neuroscience-cognitive} |
+ jeuclid | 9 | {viewing,typesetting} |
libcgns | 9 | {engineering} |
ros-rosconsole | 9 | {robotics-dev} |
scram | 9 | {engineering} |
tango | 9 | {dataacquisition} |
toulbar2 | 9 | {mathematics,numericalcomputation,logic,physics} |
- ucto | 9 | {linguistics} |
- debian-science | 8 | {machine-learning,neuroscience-cognitive} |
- dune-uggrid | 8 | {mathematics-dev} |
+ uctodata | 9 | {linguistics} |
eclib | 8 | {mathematics-dev} |
- jeuclid | 8 | {viewing,typesetting} |
libm4rie | 8 | {mathematics-dev} |
+ lrcalc | 8 | {mathematics} |
opencascade | 8 | {simulations} |
- alberta | 7 | {engineering-dev} |
+ ucto | 8 | {linguistics} |
astk | 7 | {engineering} |
cliquer | 7 | {mathematics-dev} |
debian-science | 7 | {nanoscale-physics,economics,physics,machine-learning} |
@@ -80,27 +81,25 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
iml | 7 | {mathematics-dev} |
libmatheval | 7 | {mathematics} |
libzn-poly | 7 | {mathematics-dev} |
- lrcalc | 7 | {mathematics} |
muparser | 7 | {mathematics-dev} |
urdfdom-headers | 7 | {robotics-dev} |
- cernlib | 6 | {highenergy-physics} |
code-saturne | 6 | {mathematics-dev,engineering-dev} |
coinmp | 6 | {numericalcomputation,logic,mathematics-dev} |
dxsamples | 6 | {nanoscale-physics} |
- etsf-io | 6 | {nanoscale-physics,physics} |
- frog | 6 | {linguistics} |
libhomfly | 6 | {mathematics-dev} |
libvigraimpex | 6 | {imageanalysis-dev,machine-learning} |
lrcalc | 6 | {mathematics-dev} |
psurface | 6 | {numericalcomputation} |
+ cernlib | 5 | {highenergy-physics} |
cimg | 5 | {imageanalysis-dev} | {x11::library}
debian-science | 5 | {electrophysiology} |
dxflib | 5 | {engineering-dev} |
+ etsf-io | 5 | {nanoscale-physics,physics} |
+ frog | 5 | {linguistics} |
gf2x | 5 | {mathematics-dev} |
ipe-tools | 5 | {typesetting} |
irstlm | 5 | {linguistics} |
libgetdata | 5 | {dataacquisition} |
- libitpp | 5 | {mathematics-dev,engineering-dev} |
libmatheval | 5 | {mathematics-dev} |
morse-simulator | 5 | {robotics} |
qd | 5 | {mathematics-dev} |
@@ -108,13 +107,14 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
cbflib | 4 | {nanoscale-physics} |
coda | 4 | {meteorology-dev} |
debian-science | 4 | {psychophysics} |
- debian-science | 4 | {electrophysiology} |
debian-science | 4 | {tools} |
+ debian-science | 4 | {electrophysiology} |
dimbl | 4 | {linguistics} |
dune-localfunctions | 4 | {mathematics-dev} |
libcgns | 4 | {engineering-dev} |
libgetdata | 4 | {dataacquisition-dev} |
libgtkdatabox | 4 | {engineering-dev,viewing-dev} |
+ libitpp | 4 | {mathematics-dev,engineering-dev} |
neuron | 4 | {highenergy-physics-dev} |
ratpoints | 4 | {mathematics-dev} |
sac2mseed | 4 | {geography} |
@@ -125,18 +125,18 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
timblserver | 4 | {linguistics} |
apertium-streamparser | 3 | {linguistics} |
cbflib | 3 | {nanoscale-physics-dev} |
- cernlib | 3 | {highenergy-physics} |
clhep | 3 | {highenergy-physics-dev} |
coda | 3 | {meteorology} |
code-saturne | 3 | {engineering-dev,mathematics-dev} |
- debian-science | 3 | {nanoscale-physics-dev} |
debian-science | 3 | {economics} |
+ debian-science | 3 | {nanoscale-physics-dev} |
fastjet | 3 | {highenergy-physics-dev} |
harp | 3 | {meteorology} |
hpcc | 3 | {numericalcomputation,distributedcomputing} |
liblbfgs | 3 | {mathematics-dev} |
looptools | 3 | {highenergy-physics} |
mbt | 3 | {linguistics} |
+ metis-edf | 3 | {numericalcomputation,engineering} |
newmat | 3 | {mathematics-dev} |
openmx | 3 | {physics,nanoscale-physics} |
openstereogram | 3 | {tools} |
@@ -152,17 +152,16 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
clipper | 2 | {nanoscale-physics-dev} |
cqrlib | 2 | {mathematics-dev} |
cvector | 2 | {mathematics-dev} |
- debian-science | 2 | {physics} |
debian-science | 2 | {neuroscience-cognitive} |
+ debian-science | 2 | {physics} |
gemmlowp | 2 | {mathematics-dev} |
itsol | 2 | {mathematics-dev} |
- jhdf | 2 | {engineering} |
jhdf | 2 | {engineering-dev} |
+ jhdf | 2 | {engineering} |
libccp4 | 2 | {nanoscale-physics-dev} |
liblxi | 2 | {dataacquisition-dev,engineering-dev} |
looptools | 2 | {highenergy-physics-dev} |
mbtserver | 2 | {linguistics} |
- metis-edf | 2 | {numericalcomputation,engineering} |
neartree | 2 | {numericalcomputation,mathematics-dev} |
python-aws-xray-sdk | 2 | {dataacquisition-dev} |
ros-opencv-apps | 2 | {robotics} |
@@ -180,6 +179,7 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
libvigraimpex | 1 | {imageanalysis-dev,machine-learning} |
ompl | 1 | {robotics-dev} |
openctm | 1 | {physics-dev} |
+ openturns | 1 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
pynac | 1 | {mathematics-dev} |
quadrule | 1 | {mathematics-dev} |
ssm | 1 | {nanoscale-physics-dev} |
@@ -211,8 +211,8 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
calculix-ccx-test | 0 | {simulations,engineering,numericalcomputation} |
- cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics,physics} |
+ cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics-dev} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
@@ -235,9 +235,8 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
mrmpi | 0 | {tools} |
ompl | 0 | {robotics} |
openigtlink | 0 | {robotics-dev} |
- openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
- openturns | 0 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
+ openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
psurface | 0 | {numericalcomputation} |
python-escript | 0 | {simulations,engineering,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
@@ -255,5 +254,5 @@ Last-Update: Thu, 02 Jun 2022 01:42:03 +0000
triangle | 0 | {physics-dev} |
trilinos | 0 | {physics-dev,mathematics-dev,engineering-dev} |
visp-images | 0 | {robotics-dev} |
-(287 rows)
+(286 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/462e9acc821c738ff0831ccc086cef35a11aa3eb
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