[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Mon Jun 20 14:42:24 BST 2022



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
8ad1c77a by Andreas Tille at 2022-06-20T13:42:18+00:00
automatic update

- - - - -


3 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,51 +1,51 @@
-Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
+Last-Update: Mon, 20 Jun 2022 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
  dcmtk                         |    171 | {covid-19,imaging}                                  | 
- orthanc                       |    100 | {imaging,covid-19,practice}                         | 
- orthanc-wsi                   |     47 | {covid-19,imaging,his,laboratory,oncology,practice} | 
- node-shiny-server             |     42 | {covid-19,epi}                                      | 
- amide                         |     20 | {imaging}                                           | 
- dicom3tools                   |     18 | {imaging}                                           | 
- dicomscope                    |     17 | {imaging}                                           | 
- orthanc-webviewer             |     16 | {imaging}                                           | 
+ orthanc                       |    101 | {imaging,covid-19,practice}                         | 
+ orthanc-wsi                   |     49 | {covid-19,imaging,his,laboratory,oncology,practice} | 
+ node-shiny-server             |     41 | {covid-19,epi}                                      | 
+ dicom3tools                   |     20 | {imaging}                                           | 
+ amide                         |     19 | {imaging}                                           | 
+ dicomscope                    |     18 | {imaging}                                           | 
+ orthanc-webviewer             |     17 | {imaging}                                           | 
  gnumed-server                 |     15 | {practice,covid-19}                                 | 
- gdcm                          |     12 | {imaging-dev}                                       | 
- invesalius                    |     12 | {imaging}                                           | 
- orthanc-dicomweb              |     12 | {covid-19,imaging}                                  | 
+ gdcm                          |     13 | {imaging-dev}                                       | 
+ orthanc-dicomweb              |     13 | {covid-19,imaging}                                  | 
+ invesalius                    |     11 | {imaging}                                           | 
  mrtrix3                       |     10 | {imaging}                                           | 
- gdcm                          |      9 | {imaging,covid-19}                                  | 
+ gdcm                          |      8 | {imaging,covid-19}                                  | 
  adun.app                      |      7 | {bio}                                               | 
  biojava-live                  |      7 | {bio-dev}                                           | 
- nipype                        |      7 | {imaging-dev,imaging}                               | 
+ libminc                       |      7 | {imaging-dev}                                       | 
  staden                        |      7 | {bio}                                               | 
- libminc                       |      6 | {imaging-dev}                                       | 
  librg-utils-perl              |      6 | {bio}                                               | 
+ nipype                        |      6 | {imaging-dev,imaging}                               | 
  obitools                      |      6 | {bio}                                               | 
+ orthanc-postgresql            |      6 | {imaging}                                           | 
  pixelmed                      |      6 | {imaging}                                           | 
  treeview                      |      6 | {bio,bio-phylogeny}                                 | 
  bio-tradis                    |      5 | {bio,bio-dev}                                       | 
+ canu                          |      5 | {bio}                                               | 
  elastix                       |      5 | {imaging}                                           | 
  jebl2                         |      5 | {bio-dev}                                           | 
  orthanc-gdcm                  |      5 | {imaging}                                           | 
- orthanc-postgresql            |      5 | {imaging}                                           | 
- pymia                         |      5 | {imaging-dev}                                       | 
- canu                          |      4 | {bio}                                               | 
+ orthanc-mysql                 |      5 | {imaging}                                           | 
+ salmon                        |      5 | {bio,covid-19}                                      | 
  getdata                       |      4 | {bio}                                               | 
  ghmm                          |      4 | {bio}                                               | 
  king                          |      4 | {typesetting,imaging}                               | 
  lamarc                        |      4 | {bio}                                               | 
  libsbml                       |      4 | {bio-dev}                                           | 
  mia                           |      4 | {imaging}                                           | 
- orthanc-mysql                 |      4 | {imaging}                                           | 
  oscar                         |      4 | {tools,practice,data}                               | 
  plastimatch                   |      4 | {imaging}                                           | 
+ pymia                         |      4 | {imaging-dev}                                       | 
  python-wdlparse               |      4 | {bio-dev}                                           | 
  rdp-alignment                 |      4 | {bio}                                               | 
  runcircos-gui                 |      4 | {bio}                                               | 
  saint                         |      4 | {bio}                                               | 
- salmon                        |      4 | {bio,covid-19}                                      | 
  sibsim4                       |      4 | {cloud,bio}                                         | 
  spread-phy                    |      4 | {bio,bio-phylogeny}                                 | 
  stacks                        |      4 | {bio}                                               | 
@@ -144,7 +144,6 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  pique                         |      1 | {bio}                                               | 
  plasmidid                     |      1 | {bio,covid-19}                                      | 
  pplacer                       |      1 | {covid-19,bio,bio-phylogeny}                        | 
- provean                       |      1 | {bio}                                               | 
  seq-gen                       |      1 | {bio}                                               | 
  srf                           |      1 | {bio-dev}                                           | 
  tipp                          |      1 | {covid-19,bio}                                      | 
@@ -176,6 +175,7 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  orthanc-imagej                |      0 | {imaging}                                           | 
  pbcopper                      |      0 | {bio-dev}                                           | 
  pbseqlib                      |      0 | {bio-dev}                                           | 
+ provean                       |      0 | {bio}                                               | 
  python-seqcluster             |      0 | {bio}                                               | 
  python-seqcluster             |      0 | {bio-dev,covid-19}                                  | 
  resfinder-db                  |      0 | {bio}                                               | 


=====================================
debian-science-tests.txt
=====================================
@@ -1,83 +1,83 @@
-Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
+Last-Update: Mon, 20 Jun 2022 13:42:04 +0000
 
       Source                             | Vote   |                    Tasks                                                         |                                Tags                                
 -----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts                                     |   2929 | {viewing}                                                                        | 
- sympy                                   |   1942 | {nanoscale-physics,physics}                                                      | 
- armadillo                               |    180 | {mathematics-dev}                                                                | 
- python-pyqtgraph                        |    145 | {viewing}                                                                        | 
+ gts                                     |   2927 | {viewing}                                                                        | 
+ sympy                                   |   1935 | {nanoscale-physics,physics}                                                      | 
+ armadillo                               |    176 | {mathematics-dev}                                                                | 
  suitesparse                             |    145 | {mathematics-dev,numericalcomputation}                                           | 
+ python-pyqtgraph                        |    144 | {viewing}                                                                        | 
  atlas                                   |     82 | {mathematics-dev}                                                                | 
- nltk                                    |     81 | {linguistics}                                                                    | 
- arpack                                  |     63 | {mathematics-dev}                                                                | 
- cypari2                                 |     51 | {mathematics-dev}                                                                | 
- imview                                  |     44 | {viewing}                                                                        | 
- arduino-mk                              |     41 | {robotics}                                                                       | 
- flintqs                                 |     36 | {mathematics}                                                                    | 
+ nltk                                    |     79 | {linguistics}                                                                    | 
+ arpack                                  |     64 | {mathematics-dev}                                                                | 
+ cypari2                                 |     53 | {mathematics-dev}                                                                | 
+ arduino-mk                              |     42 | {robotics}                                                                       | 
+ imview                                  |     42 | {viewing}                                                                        | 
+ flintqs                                 |     35 | {mathematics}                                                                    | 
  pyzo                                    |     35 | {numericalcomputation}                                                           | 
- rubiks                                  |     35 | {geometry,mathematics}                                                           | 
  eclib                                   |     34 | {mathematics}                                                                    | 
- fftw                                    |     33 | {physics-dev,mathematics-dev,meteorology-dev}                                    | 
+ fftw                                    |     34 | {physics-dev,mathematics-dev,meteorology-dev}                                    | 
+ rubiks                                  |     34 | {geometry,mathematics}                                                           | 
+ feedgnuplot                             |     22 | {viewing}                                                                        | 
  sketch                                  |     22 | {typesetting}                                                                    | 
- feedgnuplot                             |     21 | {viewing}                                                                        | 
  libmatio                                |     21 | {mathematics-dev}                                                                | 
  cernlib                                 |     20 | {highenergy-physics}                                                             | 
  bossa                                   |     18 | {devices}                                                                        | 
  geg                                     |     18 | {viewing}                                                                        | 
  neuron                                  |     17 | {simulations,highenergy-physics,neuroscience-modeling}                           | 
+ ppl                                     |     17 | {numericalcomputation}                                                           | 
  fftw                                    |     16 | {meteorology-dev,mathematics-dev,physics-dev}                                    | 
- guidata                                 |     16 | {dataacquisition-dev}                                                            | 
- ppl                                     |     16 | {numericalcomputation}                                                           | 
+ ntl                                     |     16 | {mathematics-dev}                                                                | 
  flann                                   |     15 | {mathematics-dev,engineering-dev}                                                | 
+ guidata                                 |     15 | {dataacquisition-dev}                                                            | 
  mathgl                                  |     15 | {viewing}                                                                        | 
- ntl                                     |     15 | {mathematics-dev}                                                                | 
+ scalapack                               |     15 | {nanoscale-physics-dev}                                                          | 
  vitables                                |     15 | {numericalcomputation}                                                           | 
  cernlib                                 |     14 | {highenergy-physics-dev}                                                         | 
- guiqwt                                  |     14 | {viewing,numericalcomputation}                                                   | 
- scalapack                               |     14 | {nanoscale-physics-dev}                                                          | 
+ libm4ri                                 |     14 | {mathematics-dev}                                                                | 
  coinor-symphony                         |     13 | {logic,numericalcomputation,mathematics}                                         | 
  form                                    |     13 | {mathematics}                                                                    | 
- gts                                     |     13 | {viewing-dev}                                                                    | 
- libm4ri                                 |     13 | {mathematics-dev}                                                                | 
+ getdp                                   |     13 | {engineering,simulations,mathematics}                                            | 
+ guiqwt                                  |     13 | {viewing,numericalcomputation}                                                   | 
  ros-ros-environment                     |     13 | {robotics-dev}                                                                   | 
  cliquer                                 |     12 | {mathematics}                                                                    | 
- getdp                                   |     12 | {engineering,simulations,mathematics}                                            | 
- gfsview                                 |     12 | {viewing}                                                                        | 
+ gts                                     |     12 | {viewing-dev}                                                                    | 
  neuron                                  |     12 | {highenergy-physics-dev}                                                         | 
  picosat                                 |     12 | {logic}                                                                          | 
+ rheolef                                 |     12 | {mathematics}                                                                    | 
  auto-07p                                |     11 | {mathematics}                                                                    | 
  debian-science                          |     11 | {mathematics,economics,machine-learning,physics,nanoscale-physics}               | 
+ gfsview                                 |     11 | {viewing}                                                                        | 
+ libm4rie                                |     11 | {mathematics-dev}                                                                | 
  opencascade                             |     11 | {simulations}                                                                    | 
  opticalraytracer                        |     11 | {physics}                                                                        | 
- rheolef                                 |     11 | {mathematics}                                                                    | 
  uctodata                                |     11 | {linguistics}                                                                    | 
- debian-science                          |     10 | {neuroscience-cognitive,machine-learning}                                        | 
- libm4rie                                |     10 | {mathematics-dev}                                                                | 
+ eclib                                   |     10 | {mathematics-dev}                                                                | 
  lxi-tools                               |     10 | {dataacquisition,engineering}                                                    | 
  polylib                                 |     10 | {mathematics}                                                                    | 
  python-escript                          |     10 | {numericalcomputation,simulations,engineering}                                   | 
  syrthes                                 |     10 | {engineering}                                                                    | 
  ucto                                    |     10 | {linguistics}                                                                    | 
  apophenia                               |      9 | {statistics}                                                                     | 
+ cliquer                                 |      9 | {mathematics-dev}                                                                | 
  debian-science                          |      9 | {economics,statistics,nanoscale-physics,physics}                                 | 
- eclib                                   |      9 | {mathematics-dev}                                                                | 
+ debian-science                          |      9 | {neuroscience-cognitive,machine-learning}                                        | 
+ iml                                     |      9 | {mathematics-dev}                                                                | 
  ipe-tools                               |      9 | {typesetting}                                                                    | 
- jeuclid                                 |      9 | {typesetting,viewing}                                                            | 
  libcgns                                 |      9 | {engineering}                                                                    | 
+ libzn-poly                              |      9 | {mathematics-dev}                                                                | 
  pcl                                     |      9 | {robotics-dev}                                                                   | 
  tango                                   |      9 | {dataacquisition}                                                                | 
  toulbar2                                |      9 | {logic,numericalcomputation,mathematics,physics}                                 | 
- cliquer                                 |      8 | {mathematics-dev}                                                                | 
- dune-uggrid                             |      8 | {mathematics-dev}                                                                | 
- iml                                     |      8 | {mathematics-dev}                                                                | 
- libzn-poly                              |      8 | {mathematics-dev}                                                                | 
+ jeuclid                                 |      8 | {typesetting,viewing}                                                            | 
+ libhomfly                               |      8 | {mathematics-dev}                                                                | 
  lrcalc                                  |      8 | {mathematics-dev}                                                                | 
  scram                                   |      8 | {engineering}                                                                    | 
  urdfdom-headers                         |      8 | {robotics-dev}                                                                   | 
  code-saturne                            |      7 | {mathematics-dev,engineering-dev}                                                | 
  debian-science                          |      7 | {economics,physics,nanoscale-physics,machine-learning}                           | 
+ dune-uggrid                             |      7 | {mathematics-dev}                                                                | 
  gf2x                                    |      7 | {mathematics-dev}                                                                | 
- libhomfly                               |      7 | {mathematics-dev}                                                                | 
  libitpp                                 |      7 | {engineering-dev,mathematics-dev}                                                | 
  libmatheval                             |      7 | {mathematics}                                                                    | 
  opencascade                             |      7 | {simulations}                                                                    | 
@@ -91,8 +91,6 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  irstlm                                  |      6 | {linguistics}                                                                    | 
  libvigraimpex                           |      6 | {imageanalysis-dev,machine-learning}                                             | 
  lrcalc                                  |      6 | {mathematics}                                                                    | 
- matlab-support                          |      6 | {numericalcomputation,mathematics}                                               | 
- muparser                                |      6 | {mathematics-dev}                                                                | 
  teem                                    |      6 | {imageanalysis}                                                                  | 
  astk                                    |      5 | {engineering}                                                                    | 
  cimg                                    |      5 | {imageanalysis-dev}                                                              | {x11::library}
@@ -100,6 +98,8 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  debian-science                          |      5 | {electrophysiology}                                                              | 
  dimbl                                   |      5 | {linguistics}                                                                    | 
  ipe-tools                               |      5 | {typesetting}                                                                    | 
+ matlab-support                          |      5 | {numericalcomputation,mathematics}                                               | 
+ muparser                                |      5 | {mathematics-dev}                                                                | 
  ratpoints                               |      5 | {mathematics-dev}                                                                | 
  sac2mseed                               |      5 | {geography}                                                                      | 
  tango                                   |      5 | {dataacquisition}                                                                | 
@@ -107,10 +107,10 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  apertium-streamparser                   |      4 | {linguistics}                                                                    | 
  cbflib                                  |      4 | {nanoscale-physics}                                                              | 
  cernlib                                 |      4 | {highenergy-physics}                                                             | 
- debian-science                          |      4 | {psychophysics}                                                                  | 
  debian-science                          |      4 | {economics}                                                                      | 
  debian-science                          |      4 | {electrophysiology}                                                              | 
  debian-science                          |      4 | {nanoscale-physics-dev}                                                          | 
+ debian-science                          |      4 | {psychophysics}                                                                  | 
  etsf-io                                 |      4 | {nanoscale-physics,physics}                                                      | 
  harp                                    |      4 | {meteorology}                                                                    | 
  libcgns                                 |      4 | {engineering-dev}                                                                | 
@@ -119,6 +119,7 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  mbt                                     |      4 | {linguistics}                                                                    | 
  morse-simulator                         |      4 | {robotics}                                                                       | 
  qd                                      |      4 | {mathematics-dev}                                                                | 
+ qwtplot3d                               |      4 | {viewing-dev}                                                                    | 
  tango                                   |      4 | {dataacquisition-dev}                                                            | 
  taurus                                  |      4 | {dataacquisition}                                                                | 
  timblserver                             |      4 | {linguistics}                                                                    | 
@@ -129,6 +130,7 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  dune-istl                               |      3 | {mathematics-dev}                                                                | 
  fastjet                                 |      3 | {highenergy-physics-dev}                                                         | 
  gemmlowp                                |      3 | {mathematics-dev}                                                                | 
+ jhdf                                    |      3 | {engineering}                                                                    | 
  libgetdata                              |      3 | {dataacquisition-dev}                                                            | 
  libgtkdatabox                           |      3 | {engineering-dev,viewing-dev}                                                    | 
  looptools                               |      3 | {highenergy-physics}                                                             | 
@@ -136,9 +138,7 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  neuron                                  |      3 | {highenergy-physics-dev}                                                         | 
  newmat                                  |      3 | {mathematics-dev}                                                                | 
  openmx                                  |      3 | {nanoscale-physics,physics}                                                      | 
- openstereogram                          |      3 | {tools}                                                                          | 
  psurface                                |      3 | {numericalcomputation}                                                           | 
- qwtplot3d                               |      3 | {viewing-dev}                                                                    | 
  ros-opencv-apps                         |      3 | {robotics}                                                                       | 
  sardana                                 |      3 | {dataacquisition}                                                                | 
  simbody                                 |      3 | {robotics-dev}                                                                   | 
@@ -154,7 +154,7 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  cvector                                 |      2 | {mathematics-dev}                                                                | 
  debian-science                          |      2 | {physics}                                                                        | 
  itsol                                   |      2 | {mathematics-dev}                                                                | 
- jhdf                                    |      2 | {engineering}                                                                    | 
+ jhdf                                    |      2 | {engineering-dev}                                                                | 
  libccp4                                 |      2 | {nanoscale-physics-dev}                                                          | 
  libgetdata                              |      2 | {dataacquisition-dev}                                                            | 
  liblbfgs                                |      2 | {mathematics-dev}                                                                | 
@@ -163,6 +163,7 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  metis-edf                               |      2 | {engineering,numericalcomputation}                                               | 
  mrmpi                                   |      2 | {tools}                                                                          | 
  neartree                                |      2 | {numericalcomputation,mathematics-dev}                                           | 
+ openstereogram                          |      2 | {tools}                                                                          | 
  sparskit                                |      2 | {mathematics-dev}                                                                | 
  apriltag                                |      1 | {robotics-dev}                                                                   | 
  asl                                     |      1 | {physics-dev}                                                                    | 
@@ -171,7 +172,6 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  collada-dom                             |      1 | {viewing-dev}                                                                    | 
  dune-localfunctions                     |      1 | {mathematics-dev}                                                                | 
  frogdata                                |      1 | {linguistics}                                                                    | 
- jhdf                                    |      1 | {engineering-dev}                                                                | 
  libdogleg                               |      1 | {mathematics-dev}                                                                | 
  liblxi                                  |      1 | {engineering-dev,dataacquisition-dev}                                            | 
  liborigin2                              |      1 | {viewing-dev}                                                                    | 
@@ -202,9 +202,9 @@ Last-Update: Mon, 20 Jun 2022 01:42:04 +0000
  apertium-urd-hin                        |      0 | {linguistics}                                                                    | 
  calculix-ccx-doc                        |      0 | {simulations,numericalcomputation,engineering}                                   | 
  calculix-ccx-test                       |      0 | {simulations,numericalcomputation,engineering}                                   | 
+ cernlib                                 |      0 | {highenergy-physics}                                                             | 
  cernlib                                 |      0 | {highenergy-physics,physics}                                                     | 
  cernlib                                 |      0 | {highenergy-physics-dev}                                                         | 
- cernlib                                 |      0 | {highenergy-physics}                                                             | 
  ckon                                    |      0 | {highenergy-physics-dev}                                                         | 
  clhep                                   |      0 | {highenergy-physics-dev}                                                         | 
  coda                                    |      0 | {meteorology-dev}                                                                | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8ad1c77aef441ab7943ec539bb4f63daabcee46b

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