Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a8414c74 by Andreas Tille at 2022-06-26T13:42:53+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,2 +1,192 @@
-Last-Update: Sun, 26 Jun 2022 01:42:04 +0000
+Last-Update: Sun, 26 Jun 2022 13:42:04 +0000
+
+ Source | Vote | Tasks | Tags
+-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
+ dcmtk | 162 | {covid-19,imaging} |
+ orthanc | 93 | {imaging,covid-19,practice} |
+ orthanc-wsi | 44 | {covid-19,imaging,his,laboratory,oncology,practice} |
+ node-shiny-server | 38 | {covid-19,epi} |
+ dicom3tools | 22 | {imaging} |
+ amide | 20 | {imaging} |
+ dicomscope | 16 | {imaging} |
+ orthanc-webviewer | 15 | {imaging} |
+ gdcm | 11 | {imaging-dev} |
+ gnumed-server | 11 | {practice,covid-19} |
+ invesalius | 11 | {imaging} |
+ orthanc-dicomweb | 11 | {covid-19,imaging} |
+ mrtrix3 | 9 | {imaging} |
+ gdcm | 8 | {imaging,covid-19} |
+ libminc | 8 | {imaging-dev} |
+ adun.app | 7 | {bio} |
+ oscar | 6 | {tools,practice,data} |
+ pixelmed | 6 | {imaging} |
+ plastimatch | 6 | {imaging} |
+ elastix | 5 | {imaging} |
+ king | 5 | {typesetting,imaging} |
+ librg-utils-perl | 5 | {bio} |
+ mia | 5 | {imaging} |
+ biojava-live | 4 | {bio-dev} |
+ libsbml | 4 | {bio-dev} |
+ nipype | 4 | {imaging-dev,imaging} |
+ obitools | 4 | {bio} |
+ orthanc-gdcm | 4 | {imaging} |
+ orthanc-postgresql | 4 | {imaging} |
+ salmon | 4 | {bio,covid-19} |
+ staden | 4 | {bio} |
+ getdata | 3 | {bio} |
+ pymia | 3 | {imaging-dev} |
+ treeview | 3 | {bio,bio-phylogeny} |
+ bart-view | 2 | {imaging} |
+ blimps | 2 | {bio} |
+ cmtk | 2 | {imaging} |
+ dicompyler | 2 | {oncology} |
+ embassy-domainatrix | 2 | {bio,cloud} |
+ jebl2 | 2 | {bio-dev} |
+ orthanc-mysql | 2 | {imaging} |
+ papyrus | 2 | {imaging-dev} |
+ python-wdlparse | 2 | {bio-dev} |
+ runcircos-gui | 2 | {bio} |
+ sift | 2 | {bio} |
+ varna | 2 | {bio} |
+ acedb | 1 | {bio,cloud} |
+ arden | 1 | {bio,cloud} |
+ biomaj3-cli | 1 | {cloud} |
+ bio-tradis | 1 | {bio,bio-dev} |
+ canu | 1 | {bio} |
+ cat-bat | 1 | {covid-19,bio} |
+ cufflinks | 1 | {cloud,bio} |
+ emperor | 1 | {bio} |
+ ghmm | 1 | {bio} |
+ htscodecs | 1 | {bio-dev,covid-19} |
+ lamarc | 1 | {bio} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
+ libctapimkt | 1 | {practice} |
+ libdivsufsort | 1 | {bio-dev} |
+ libgenome | 1 | {bio-dev} |
+ libhmsbeagle | 1 | {bio-dev} |
+ libncl | 1 | {bio} |
+ libvistaio | 1 | {imaging-dev} |
+ mauve-aligner | 1 | {bio} |
+ melting | 1 | {bio,cloud} |
+ orthanc-python | 1 | {covid-19} |
+ phyutility | 1 | {bio,cloud} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
+ piler | 1 | {bio} |
+ pscan-chip | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ saint | 1 | {bio} |
+ sibsim4 | 1 | {cloud,bio} |
+ spread-phy | 1 | {bio,bio-phylogeny} |
+ stacks | 1 | {bio} |
+ vienna-rna | 1 | {bio,covid-19} |
+ anfo | 0 | {cloud,bio} |
+ assemblytics | 0 | {bio} |
+ bambamc | 0 | {bio-dev} |
+ beast-mcmc | 0 | {bio,bio-phylogeny} |
+ biojava4-live | 0 | {bio-dev} |
+ biosyntax | 0 | {bio} |
+ bitseq | 0 | {bio} |
+ brig | 0 | {bio} |
+ camp | 0 | {imaging-dev} |
+ clonalframeml | 0 | {covid-19,bio} |
+ clonalorigin | 0 | {bio} |
+ ctn | 0 | {imaging-dev} |
+ cutesv | 0 | {bio} |
+ delly | 0 | {bio,covid-19} |
+ dextractor | 0 | {covid-19,bio} |
+ eegdev | 0 | {imaging-dev} |
+ embassy-domalign | 0 | {bio,cloud} |
+ embassy-domsearch | 0 | {bio,cloud} |
+ emboss-explorer | 0 | {bio} |
+ emmax | 0 | {bio} |
+ fastml | 0 | {bio} |
+ fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio-dev} |
+ gatb-core | 0 | {bio} |
+ hinge | 0 | {bio} |
+ insighttoolkit5 | 0 | {imaging-dev} |
+ ipig | 0 | {bio} |
+ jmodeltest | 0 | {bio-phylogeny,bio} |
+ kmerresistance | 0 | {bio} |
+ libbigwig | 0 | {bio-dev} |
+ libbioparser-dev | 0 | {bio-dev} |
+ libbpp-core | 0 | {bio-dev} |
+ libbpp-phyl | 0 | {bio-dev} |
+ libbpp-phyl-omics | 0 | {bio-dev} |
+ libbpp-popgen | 0 | {bio-dev} |
+ libbpp-raa | 0 | {bio-dev} |
+ libbpp-seq | 0 | {bio-dev} |
+ libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
+ libgkarrays | 0 | {bio-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
+ libjloda-java | 0 | {bio-dev} |
+ libmems | 0 | {bio-dev} |
+ libmialm | 0 | {imaging-dev} |
+ libmuscle | 0 | {bio-dev} |
+ libncl | 0 | {bio-dev} |
+ libpal-java | 0 | {bio-dev} |
+ libpsortb | 0 | {bio-dev} |
+ libqes | 0 | {bio-dev} |
+ librdp-taxonomy-tree-java | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
+ libxdf | 0 | {imaging-dev} |
+ malt | 0 | {bio} |
+ megadepth | 0 | {bio} |
+ megan-ce | 0 | {bio} |
+ metaphlan2 | 0 | {bio} |
+ metastudent-data | 0 | {bio} |
+ metastudent-data-2 | 0 | {bio} |
+ mhap | 0 | {bio,bio-ngs} |
+ mia | 0 | {imaging-dev} |
+ miaviewit | 0 | {imaging-dev} |
+ microbegps | 0 | {bio} |
+ milib | 0 | {bio-dev,covid-19} |
+ ncbi-vdb | 0 | {bio-dev} |
+ opencfu | 0 | {laboratory} |
+ orthanc-imagej | 0 | {imaging} |
+ pbcopper | 0 | {bio-dev} |
+ pbseqlib | 0 | {bio-dev} |
+ pique | 0 | {bio} |
+ placnet | 0 | {bio} |
+ plasmidid | 0 | {bio,covid-19} |
+ plasmidseeker | 0 | {bio} |
+ pplacer | 0 | {covid-19,bio,bio-phylogeny} |
+ proalign | 0 | {bio,bio-phylogeny} |
+ provean | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
+ qcumber | 0 | {bio} |
+ rambo-k | 0 | {bio} |
+ rdp-classifier | 0 | {bio} |
+ resfinder-db | 0 | {bio} |
+ rockhopper | 0 | {bio} |
+ rtax | 0 | {cloud,bio} |
+ sbmltoolbox | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
+ sga | 0 | {bio} |
+ simpleitk | 0 | {imaging-dev} |
+ skesa | 0 | {bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ soapaligner | 0 | {bio} |
+ soapsnp | 0 | {bio} |
+ sprai | 0 | {bio} |
+ srf | 0 | {bio-dev} |
+ suitename | 0 | {bio} |
+ surankco | 0 | {bio} |
+ thesias | 0 | {bio,covid-19} |
+ tipp | 0 | {covid-19,bio} |
+ tophat-recondition | 0 | {covid-19,bio} |
+ trace2dbest | 0 | {bio} |
+ tracetuner | 0 | {bio} |
+ tvc | 0 | {bio} |
+ varscan | 0 | {bio,covid-19} |
+ xdffileio | 0 | {imaging-dev} |
+ xxsds-dynamic | 0 | {bio-dev} |
+ zalign | 0 | {cloud,bio} |
+ libmaus2 | -1 | {bio-dev,covid-19} |
+ mssstest | -1 | {tools} |
+ sight | -1 | {imaging-dev} |
+(216 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,2 +1,242 @@
-Last-Update: Sun, 26 Jun 2022 03:23:18 +0000
+Last-Update: Sun, 26 Jun 2022 13:42:05 +0000
+
+ Source | Vote | Tasks | Tags
+-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
+ gts | 2913 | {viewing} |
+ sympy | 2008 | {physics,nanoscale-physics} |
+ armadillo | 178 | {mathematics-dev} |
+ python-pyqtgraph | 139 | {viewing} |
+ suitesparse | 135 | {numericalcomputation,mathematics-dev} |
+ nltk | 83 | {linguistics} |
+ atlas | 82 | {mathematics-dev} |
+ arpack | 64 | {mathematics-dev} |
+ cypari2 | 56 | {mathematics-dev} |
+ arduino-mk | 44 | {robotics} |
+ imview | 44 | {viewing} |
+ rubiks | 36 | {geometry,mathematics} |
+ fftw | 34 | {mathematics-dev,physics-dev,meteorology-dev} |
+ flintqs | 33 | {mathematics} |
+ pyzo | 32 | {numericalcomputation} |
+ libmatio | 21 | {mathematics-dev} |
+ bossa | 20 | {devices} |
+ feedgnuplot | 18 | {viewing} |
+ sketch | 18 | {typesetting} |
+ cernlib | 17 | {highenergy-physics} |
+ ntl | 17 | {mathematics-dev} |
+ ppl | 16 | {numericalcomputation} |
+ fftw | 14 | {physics-dev,meteorology-dev,mathematics-dev} |
+ flann | 14 | {mathematics-dev,engineering-dev} |
+ geg | 14 | {viewing} |
+ neuron | 14 | {neuroscience-modeling,highenergy-physics,simulations} |
+ guidata | 13 | {dataacquisition-dev} |
+ guiqwt | 13 | {numericalcomputation,viewing} |
+ opencascade | 13 | {simulations} |
+ cernlib | 12 | {highenergy-physics-dev} |
+ gts | 12 | {viewing-dev} |
+ libm4ri | 12 | {mathematics-dev} |
+ mathgl | 12 | {viewing} |
+ ros-ros-environment | 12 | {robotics-dev} |
+ opticalraytracer | 11 | {physics} |
+ scalapack | 11 | {nanoscale-physics-dev} |
+ getdp | 10 | {simulations,mathematics,engineering} |
+ gfsview | 10 | {viewing} |
+ rheolef | 10 | {mathematics} |
+ vitables | 10 | {numericalcomputation} |
+ cliquer | 9 | {mathematics} |
+ coinor-symphony | 9 | {numericalcomputation,mathematics,logic} |
+ form | 9 | {mathematics} |
+ lxi-tools | 9 | {engineering,dataacquisition} |
+ neuron | 9 | {highenergy-physics-dev} |
+ code-saturne | 8 | {engineering-dev,mathematics-dev} |
+ libm4rie | 8 | {mathematics-dev} |
+ pcl | 8 | {robotics-dev} |
+ picosat | 8 | {logic} |
+ syrthes | 8 | {engineering} |
+ tango | 8 | {dataacquisition} |
+ uctodata | 8 | {linguistics} |
+ auto-07p | 7 | {mathematics} |
+ cliquer | 7 | {mathematics-dev} |
+ debian-science | 7 | {nanoscale-physics,mathematics,economics,physics,machine-learning} |
+ libcgns | 7 | {engineering} |
+ libvigraimpex | 7 | {imageanalysis-dev,machine-learning} |
+ libzn-poly | 7 | {mathematics-dev} |
+ muparser | 7 | {mathematics-dev} |
+ polylib | 7 | {mathematics} |
+ python-escript | 7 | {simulations,numericalcomputation,engineering} |
+ scram | 7 | {engineering} |
+ ucto | 7 | {linguistics} |
+ urdfdom-headers | 7 | {robotics-dev} |
+ dune-uggrid | 6 | {mathematics-dev} |
+ iml | 6 | {mathematics-dev} |
+ libhomfly | 6 | {mathematics-dev} |
+ lrcalc | 6 | {mathematics-dev} |
+ matlab-support | 6 | {numericalcomputation,mathematics} |
+ opencascade | 6 | {simulations} |
+ ros-rosconsole | 6 | {robotics-dev} |
+ alberta | 5 | {engineering-dev} |
+ apophenia | 5 | {statistics} |
+ coinmp | 5 | {mathematics-dev,numericalcomputation,logic} |
+ debian-science | 5 | {economics,physics,statistics,nanoscale-physics} |
+ debian-science | 5 | {neuroscience-cognitive,machine-learning} |
+ dxsamples | 5 | {nanoscale-physics} |
+ gf2x | 5 | {mathematics-dev} |
+ ipe-tools | 5 | {typesetting} |
+ libitpp | 5 | {engineering-dev,mathematics-dev} |
+ libmatheval | 5 | {mathematics} |
+ tango | 5 | {dataacquisition} |
+ teem | 5 | {imageanalysis} |
+ toulbar2 | 5 | {numericalcomputation,physics,logic,mathematics} |
+ cimg | 4 | {imageanalysis-dev} | {x11::library}
+ hpcc | 4 | {numericalcomputation,distributedcomputing} |
+ jeuclid | 4 | {typesetting,viewing} |
+ jhdf | 4 | {engineering} |
+ libcgns | 4 | {engineering-dev} |
+ lrcalc | 4 | {mathematics} |
+ qwtplot3d | 4 | {viewing-dev} |
+ ratpoints | 4 | {mathematics-dev} |
+ taurus | 4 | {dataacquisition} |
+ apertium-streamparser | 3 | {linguistics} |
+ apophenia | 3 | {statistics} |
+ code-saturne | 3 | {mathematics-dev,engineering-dev} |
+ debian-science | 3 | {electrophysiology} |
+ debian-science | 3 | {physics,nanoscale-physics,economics,machine-learning} |
+ dimbl | 3 | {linguistics} |
+ dune-istl | 3 | {mathematics-dev} |
+ dxflib | 3 | {engineering-dev} |
+ etsf-io | 3 | {nanoscale-physics,physics} |
+ frog | 3 | {linguistics} |
+ irstlm | 3 | {linguistics} |
+ jhdf | 3 | {engineering-dev} |
+ libccp4 | 3 | {nanoscale-physics-dev} |
+ mbt | 3 | {linguistics} |
+ morse-simulator | 3 | {robotics} |
+ mrmpi | 3 | {tools} |
+ sardana | 3 | {dataacquisition} |
+ timbl | 3 | {linguistics} |
+ cbflib | 2 | {nanoscale-physics} |
+ cbflib | 2 | {nanoscale-physics-dev} |
+ cernlib | 2 | {highenergy-physics} |
+ clipper | 2 | {nanoscale-physics-dev} |
+ debian-science | 2 | {psychophysics} |
+ debian-science | 2 | {physics} |
+ debian-science | 2 | {tools} |
+ harp | 2 | {meteorology} |
+ ipe-tools | 2 | {typesetting} |
+ libgetdata | 2 | {dataacquisition} |
+ libgetdata | 2 | {dataacquisition-dev} |
+ libgtkdatabox | 2 | {engineering-dev,viewing-dev} |
+ libmatheval | 2 | {mathematics-dev} |
+ libvigraimpex | 2 | {imageanalysis-dev,machine-learning} |
+ looptools | 2 | {highenergy-physics} |
+ mbtserver | 2 | {linguistics} |
+ neuron | 2 | {highenergy-physics-dev} |
+ newmat | 2 | {mathematics-dev} |
+ openmx | 2 | {nanoscale-physics,physics} |
+ ros-opencv-apps | 2 | {robotics} |
+ sac2mseed | 2 | {geography} |
+ simbody | 2 | {robotics-dev} |
+ tango | 2 | {dataacquisition-dev} |
+ timblserver | 2 | {linguistics} |
+ x13as | 2 | {economics} |
+ cernlib | 1 | {highenergy-physics} |
+ cld2 | 1 | {linguistics} |
+ coda | 1 | {meteorology-dev} |
+ collada-dom | 1 | {viewing-dev} |
+ debian-science | 1 | {neuroscience-cognitive} |
+ debian-science | 1 | {nanoscale-physics-dev} |
+ debian-science | 1 | {electrophysiology} |
+ debian-science | 1 | {economics} |
+ dune-localfunctions | 1 | {mathematics-dev} |
+ gemmlowp | 1 | {mathematics-dev} |
+ libgetdata | 1 | {dataacquisition-dev} |
+ libxsmm | 1 | {mathematics-dev} |
+ looptools | 1 | {highenergy-physics-dev} |
+ metis-edf | 1 | {engineering-dev} |
+ openigtlink | 1 | {robotics-dev} |
+ openstereogram | 1 | {tools} |
+ psurface | 1 | {numericalcomputation} |
+ qd | 1 | {mathematics-dev} |
+ tamuanova | 1 | {statistics} |
+ apertium-bel-rus | 0 | {linguistics} |
+ apertium-hin | 0 | {linguistics} |
+ apertium-isl | 0 | {linguistics} |
+ apertium-ita | 0 | {linguistics} |
+ apertium-mlt-ara | 0 | {linguistics} |
+ apertium-nno-nob | 0 | {linguistics} |
+ apertium-por-cat | 0 | {linguistics} |
+ apertium-sme-nob | 0 | {linguistics} |
+ apertium-spa | 0 | {linguistics} |
+ apertium-swe-dan | 0 | {linguistics} |
+ apertium-swe-nor | 0 | {linguistics} |
+ apertium-urd | 0 | {linguistics} |
+ apertium-urd-hin | 0 | {linguistics} |
+ apriltag | 0 | {robotics-dev} |
+ asl | 0 | {physics-dev} |
+ calculix-ccx-doc | 0 | {numericalcomputation,engineering,simulations} |
+ calculix-ccx-test | 0 | {engineering,simulations,numericalcomputation} |
+ cernlib | 0 | {physics,highenergy-physics} |
+ cernlib | 0 | {highenergy-physics-dev} |
+ cernlib | 0 | {highenergy-physics} |
+ ckon | 0 | {highenergy-physics-dev} |
+ clhep | 0 | {highenergy-physics-dev} |
+ coda | 0 | {meteorology-dev} |
+ coda | 0 | {meteorology} |
+ code-saturne | 0 | {engineering} |
+ cqrlib | 0 | {mathematics-dev} |
+ cvector | 0 | {mathematics-dev} |
+ dune-functions | 0 | {mathematics-dev} |
+ dune-grid-glue | 0 | {mathematics-dev} |
+ dune-pdelab | 0 | {mathematics-dev} |
+ dune-typetree | 0 | {mathematics-dev} |
+ etsf-io | 0 | {nanoscale-physics-dev} |
+ fastjet | 0 | {highenergy-physics-dev} |
+ frogdata | 0 | {linguistics} |
+ glpk-java | 0 | {mathematics-dev} |
+ itsol | 0 | {mathematics-dev} |
+ libdogleg | 0 | {mathematics-dev} |
+ libfolia | 0 | {linguistics} |
+ libgetdata | 0 | {dataacquisition-dev} |
+ liblbfgs | 0 | {mathematics-dev} |
+ liblxi | 0 | {engineering-dev,dataacquisition-dev} |
+ liborigin2 | 0 | {viewing-dev} |
+ libquantum | 0 | {numericalcomputation} |
+ librsl | 0 | {meteorology-dev} |
+ libsdsl | 0 | {dataacquisition-dev} |
+ looptools | 0 | {highenergy-physics-dev} |
+ mclibs | 0 | {highenergy-physics} |
+ metis-edf | 0 | {engineering,numericalcomputation} |
+ neartree | 0 | {mathematics-dev,numericalcomputation} |
+ ompl | 0 | {robotics} |
+ ompl | 0 | {robotics-dev} |
+ openctm | 0 | {physics-dev} |
+ openturns | 0 | {meteorology-dev,mathematics-dev,statistics,engineering,mathematics,meteorology} |
+ openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
+ openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
+ psurface | 0 | {numericalcomputation} |
+ pycollada | 0 | {engineering-dev} |
+ python-aws-xray-sdk | 0 | {dataacquisition-dev} |
+ python-escript | 0 | {engineering,simulations,numericalcomputation} |
+ qrupdate | 0 | {mathematics-dev} |
+ quadrule | 0 | {mathematics-dev} |
+ robot-testing-framework | 0 | {robotics-dev} |
+ ros-metapackages | 0 | {robotics} |
+ ros-metapackages | 0 | {robotics-dev} |
+ sagemath-database-combinatorial-designs | 0 | {mathematics} |
+ sagemath-database-conway-polynomials | 0 | {mathematics} |
+ sagemath-database-elliptic-curves | 0 | {mathematics} |
+ sagemath-database-graphs | 0 | {mathematics} |
+ sagemath-database-polytopes | 0 | {mathematics} |
+ siscone | 0 | {highenergy-physics-dev} |
+ slicot | 0 | {engineering-dev,robotics-dev} |
+ sparskit | 0 | {mathematics-dev} |
+ ssm | 0 | {nanoscale-physics-dev} |
+ ssm | 0 | {nanoscale-physics} |
+ tachyon | 0 | {mathematics} |
+ tango | 0 | {dataacquisition} |
+ triangle | 0 | {physics-dev} |
+ trilinos | 0 | {physics-dev,engineering-dev,mathematics-dev} |
+ visp-images | 0 | {robotics-dev} |
+ vlfeat | 0 | {imageanalysis-dev} |
+ apertium-afr-nld | -1 | {linguistics} |
+(270 rows)
=====================================
outdated_med-packages.txt
=====================================
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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a8414c74e86a34d181c1d3d3945b8006167072df
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