[med-svn] [Git][med-team/beagle][upstream] New upstream version 220505

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / beagle


Commits:
80d9380a by Andreas Tille at 2022-06-29T11:51:59+02:00
New upstream version 220505
- - - - -


30 changed files:

- main/CompHapSegment.java → beagleutil/CompHapSegment.java
- beagleutil/PbwtDivUpdater.java
- blbutil/BitList.java → blbutil/BitArray.java
- blbutil/FileUtil.java
- blbutil/Filter.java
- blbutil/InputIt.java
- blbutil/MultiThreadUtils.java
- − blbutil/Pair.java
- blbutil/Utilities.java
- blbutil/Validate.java
- bref/AsIsBref3Writer.java
- bref/Bref3.java
- bref/Bref3It.java
- bref/Bref3Reader.java
- bref/SeqCoder3.java
- bref/UnBref3.java
- imp/CodedSteps.java
- imp/HaplotypeCoder.java
- imp/ImpData.java
- imp/ImpStates.java
- ints/IndexArray.java
- ints/IntArray.java
- ints/IntIntMap.java
- main/Main.java
- main/Par.java
- main/RunStats.java
- main/WindowWriter.java
- phase/BasicPhaseStates.java
- phase/CodedSteps.java
- phase/EstPhase.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beagle/-/commit/80d9380a02e5854e0a3aa83516dec215f31ee9dd

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View it on GitLab: https://salsa.debian.org/med-team/beagle/-/commit/80d9380a02e5854e0a3aa83516dec215f31ee9dd
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