[med-svn] [Git][med-team/python-biopython][master] 5 commits: Restrict architecture list of muscle build-dependency

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-biopython


Commits:
c165111e by Peter Michael Green at 2022-03-05T14:14:59+01:00
Restrict architecture list of muscle build-dependency

Restrict architecture list of muscle build-dependency to reflect
architectures where the current version of muscle is available.

- - - - -
dbc2bfb8 by Étienne Mollier at 2022-03-05T14:30:43+01:00
Peter Green's change closes 1006667

Gbp-Dch: ignore

- - - - -
f034f424 by Étienne Mollier at 2022-03-05T15:32:45+01:00
d/control,d/python3-biopython.links: move to w3c-sgml-lib

This package provides mathml2.dtd, but in a slightly more recent
version than the one which is provided by w3-dtd-mathml.

Thanks: Peter Green and Vincent Lefevre

- - - - -
bd2ca993 by Étienne Mollier at 2022-03-05T15:33:16+01:00
Remove d/python3-biopython.lintian-overrides

The corresponding override is not in use anymore.

- - - - -
aa4b435a by Étienne Mollier at 2022-03-05T15:36:18+01:00
ready to upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/python3-biopython.links
- − debian/python3-biopython.lintian-overrides


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+python-biopython (1.79+dfsg-3) unstable; urgency=medium
+
+  [ Peter Michael Green ]
+  * Restrict architecture list of muscle build-dependency to reflect
+    architectures where the current version of muscle is available.
+    (Closes: #1006667)
+
+  [ Étienne Mollier ]
+  * d/control,d/python3-biopython.links: move from w3-dtd-mathml to slightly
+    more recent w3c-sgml-lib.
+    Thanks to Peter Green and Vincent Lefevre.
+  * Remove d/python3-biopython.lintian-overrides; not in use anymore.
+
+ -- Étienne Mollier <emollier at debian.org>  Sat, 05 Mar 2022 15:36:12 +0100
+
 python-biopython (1.79+dfsg-2) unstable; urgency=medium
 
   * Move w3-dtd-mathml from Suggests to Depends to avoid dangling symlink


=====================================
debian/control
=====================================
@@ -25,7 +25,7 @@ Build-Depends: debhelper-compat (= 13),
                emboss <!nocheck>,
                fasttree <!nocheck>,
                mafft <!nocheck>,
-               muscle <!nocheck>,
+               muscle [i386 amd64 x32] <!nocheck>,
                ncbi-blast+ <!nocheck>,
                phylip <!nocheck>,
                phyml [any-amd64 any-i386] <!nocheck>,
@@ -60,7 +60,7 @@ Depends: ${python3:Depends},
          ${misc:Depends},
          python3-renderpm,
          python3-reportlab,
-         w3-dtd-mathml
+         w3c-sgml-lib
 Recommends: python-biopython-doc (= ${source:Version}),
             ncbi-blast+ (>= 2.10.1-3)
 Suggests: python3-tk,


=====================================
debian/python3-biopython.links
=====================================
@@ -1 +1 @@
-/usr/share/xml/schema/w3c/mathml/dtd/mathml2.dtd	/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd
+/usr/share/xml/w3c-sgml-lib/schema/dtd/XX-MathML2-20031104/mathml2.dtd	/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd


=====================================
debian/python3-biopython.lintian-overrides deleted
=====================================
@@ -1,3 +0,0 @@
-# This link has been introduced with the resolution of #672407 and might not
-# be as much a concern as if it were an architecture dependent shared object.
-ldconfig-escape usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> usr/share/xml/schema/w3c/mathml/dtd/mathml2.dtd



View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/ad70d27a8bf4d383a096c32390bced5b186f938d...aa4b435a28df289d33d729a9a064746e820d8995

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/ad70d27a8bf4d383a096c32390bced5b186f938d...aa4b435a28df289d33d729a9a064746e820d8995
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