Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
4e2a3023 by Andreas Tille at 2022-03-09T13:42:39+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,63 +1,67 @@
-Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
+Last-Update: Wed, 09 Mar 2022 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging} |
- orthanc | 95 | {imaging,covid-19,practice} |
- orthanc-wsi | 45 | {his,laboratory,covid-19,oncology,practice,imaging} |
- amide | 28 | {imaging} |
- dicom3tools | 28 | {imaging} |
- dicomscope | 26 | {imaging} |
+ dcmtk | 180 | {covid-19,imaging} |
+ orthanc | 98 | {imaging,covid-19,practice} |
+ orthanc-wsi | 46 | {his,laboratory,covid-19,oncology,practice,imaging} |
+ amide | 27 | {imaging} |
+ dicomscope | 27 | {imaging} |
+ dicom3tools | 26 | {imaging} |
dcm2niix | 19 | {imaging} |
+ orthanc-webviewer | 16 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
- orthanc-webviewer | 15 | {imaging} |
invesalius | 14 | {imaging} |
- gdcm | 13 | {imaging-dev} |
gdcm | 13 | {covid-19,imaging} |
+ gdcm | 13 | {imaging-dev} |
openslide | 13 | {imaging} |
minc-tools | 12 | {imaging} |
+ dicomnifti | 11 | {imaging} |
openslide | 11 | {imaging-dev} |
- dicomnifti | 10 | {imaging} |
- nifticlib | 10 | {imaging} |
pixelmed | 10 | {imaging} |
- libminc | 9 | {imaging-dev} |
+ nifticlib | 9 | {imaging} |
biojava-live | 8 | {bio-dev} |
- mrtrix3 | 8 | {imaging} |
- nifticlib | 8 | {imaging-dev} |
- nipype | 8 | {imaging-dev,imaging} |
+ libminc | 8 | {imaging-dev} |
+ nifti2dicom | 8 | {imaging} |
adun.app | 7 | {bio} |
- lagan | 7 | {bio} |
- librg-utils-perl | 7 | {bio} |
mia | 7 | {imaging} |
- nifti2dicom | 7 | {imaging} |
+ mrtrix3 | 7 | {imaging} |
+ nifticlib | 7 | {imaging-dev} |
+ nipype | 7 | {imaging-dev,imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
orthanc-postgresql | 7 | {imaging} |
oscar | 7 | {practice,tools,data} |
salmon | 7 | {bio,covid-19} |
+ jebl2 | 6 | {bio-dev} |
+ librg-utils-perl | 6 | {bio} |
plastimatch | 6 | {imaging} |
- jebl2 | 5 | {bio-dev} |
libncl | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
obitools | 5 | {bio} |
treeview | 5 | {bio-phylogeny,bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
bio-tradis | 4 | {bio-dev,bio} |
+ clonalorigin | 4 | {bio} |
getdata | 4 | {bio} |
- ghmm | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
king | 4 | {imaging,typesetting} |
libsbml | 4 | {bio-dev} |
melting | 4 | {bio,cloud} |
orthanc-mysql | 4 | {imaging} |
stacks | 4 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ tracetuner | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
+ anfo | 3 | {bio,cloud} |
+ arden | 3 | {cloud,bio} |
bitseq | 3 | {bio} |
blimps | 3 | {bio} |
canu | 3 | {bio} |
- clonalorigin | 3 | {bio} |
cmtk | 3 | {imaging} |
dicompyler | 3 | {oncology} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
- jellyfish1 | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ ghmm | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
orthanc-gdcm | 3 | {imaging} |
@@ -68,11 +72,7 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
sibsim4 | 3 | {cloud,bio} |
sift | 3 | {bio} |
surankco | 3 | {bio} |
- tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
- anfo | 2 | {bio,cloud} |
- arden | 2 | {cloud,bio} |
assemblytics | 2 | {bio} |
atropos | 2 | {bio} |
bart-view | 2 | {imaging} |
@@ -84,7 +84,6 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
elastix | 2 | {imaging} |
embassy-domalign | 2 | {bio,cloud} |
fastml | 2 | {bio} |
- gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
htscodecs | 2 | {covid-19,bio-dev} |
@@ -100,7 +99,6 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
piler | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
- pplacer | 2 | {covid-19,bio-phylogeny,bio} |
proalign | 2 | {bio-phylogeny,bio} |
pscan-chip | 2 | {bio} |
pymia | 2 | {imaging-dev} |
@@ -121,6 +119,7 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
varscan | 2 | {bio,covid-19} |
bambamc | 1 | {bio-dev} |
biomaj3-cli | 1 | {cloud} |
+ cutesv | 1 | {bio} |
dextractor | 1 | {bio,covid-19} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
@@ -135,6 +134,7 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
opensurgsim | 1 | {imaging-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
+ pplacer | 1 | {covid-19,bio-phylogeny,bio} |
seq-gen | 1 | {bio} |
skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
@@ -146,7 +146,6 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- cutesv | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -204,5 +203,5 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
xxsds-dynamic | 0 | {bio-dev} |
libmaus2 | -1 | {covid-19,bio-dev} |
rockhopper | -1 | {bio} |
-(232 rows)
+(231 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,152 +1,149 @@
-Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
+Last-Update: Wed, 09 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3110 | {viewing} |
- sympy | 1751 | {physics,nanoscale-physics} |
- suitesparse | 274 | {mathematics-dev,numericalcomputation} |
- spyder | 226 | {numericalcomputation} |
- armadillo | 225 | {mathematics-dev} |
+ gts | 3093 | {viewing} |
+ sympy | 1752 | {physics,nanoscale-physics} |
+ suitesparse | 273 | {mathematics-dev,numericalcomputation} |
+ spyder | 230 | {numericalcomputation} |
+ armadillo | 215 | {mathematics-dev} |
python-pyqtgraph | 144 | {viewing} |
- atlas | 95 | {mathematics-dev} |
- arpack | 57 | {mathematics-dev} |
- cypari2 | 57 | {mathematics-dev} |
- imview | 53 | {viewing} |
- arduino-mk | 52 | {robotics} |
- fftw | 43 | {physics-dev,meteorology-dev,mathematics-dev} |
- rubiks | 43 | {geometry,mathematics} |
+ atlas | 92 | {mathematics-dev} |
+ cypari2 | 58 | {mathematics-dev} |
+ arpack | 56 | {mathematics-dev} |
+ imview | 51 | {viewing} |
+ arduino-mk | 50 | {robotics} |
flintqs | 42 | {mathematics} |
- eclib | 40 | {mathematics} |
+ pyzo | 41 | {numericalcomputation} |
+ rubiks | 41 | {geometry,mathematics} |
scalapack | 40 | {nanoscale-physics-dev} |
- pyzo | 39 | {numericalcomputation} |
- guidata | 25 | {dataacquisition-dev} |
- guiqwt | 25 | {numericalcomputation,viewing} |
- feedgnuplot | 24 | {viewing} |
- gts | 24 | {viewing-dev} |
- sketch | 24 | {typesetting} |
+ eclib | 39 | {mathematics} |
+ fftw | 32 | {physics-dev,meteorology-dev,mathematics-dev} |
+ feedgnuplot | 23 | {viewing} |
+ gts | 23 | {viewing-dev} |
+ guidata | 23 | {dataacquisition-dev} |
+ guiqwt | 23 | {numericalcomputation,viewing} |
bossa | 22 | {devices} |
- geg | 22 | {viewing} |
- fftw | 21 | {meteorology-dev,physics-dev,mathematics-dev} |
+ sketch | 22 | {typesetting} |
+ geg | 21 | {viewing} |
ntl | 21 | {mathematics-dev} |
flann | 20 | {mathematics-dev,engineering-dev} |
- vitables | 19 | {numericalcomputation} |
ppl | 18 | {numericalcomputation} |
cernlib | 17 | {highenergy-physics} |
- opencascade | 17 | {simulations} |
- coinor-symphony | 16 | {numericalcomputation,logic,mathematics} |
- neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
+ vitables | 17 | {numericalcomputation} |
nltk | 16 | {linguistics} |
+ coinor-symphony | 15 | {numericalcomputation,logic,mathematics} |
libmatio | 15 | {mathematics-dev} |
+ neuron | 15 | {neuroscience-modeling,highenergy-physics,simulations} |
+ opencascade | 15 | {simulations} |
picosat | 15 | {logic} |
ros-ros-environment | 15 | {robotics-dev} |
- gfsview | 14 | {viewing} |
+ auto-07p | 13 | {mathematics} |
libitpp | 13 | {engineering-dev,mathematics-dev} |
libm4ri | 13 | {mathematics-dev} |
- mathgl | 13 | {viewing} |
- matlab-support | 13 | {mathematics,numericalcomputation} |
opticalraytracer | 13 | {physics} |
pcl | 13 | {robotics-dev} |
- rheolef | 13 | {mathematics} |
tango | 13 | {dataacquisition} |
- auto-07p | 12 | {mathematics} |
form | 12 | {mathematics} |
- apophenia | 11 | {statistics} |
+ gfsview | 12 | {viewing} |
+ matlab-support | 12 | {mathematics,numericalcomputation} |
cernlib | 11 | {highenergy-physics-dev} |
- debian-science | 11 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
- getdp | 11 | {engineering,mathematics,simulations} |
- lxi-tools | 11 | {engineering,dataacquisition} |
+ rheolef | 11 | {mathematics} |
cliquer | 10 | {mathematics} |
- debian-science | 10 | {nanoscale-physics,machine-learning,physics,economics} |
+ fftw | 10 | {meteorology-dev,physics-dev,mathematics-dev} |
+ mathgl | 10 | {viewing} |
muparser | 10 | {mathematics-dev} |
neuron | 10 | {highenergy-physics-dev} |
polylib | 10 | {mathematics} |
- psurface | 10 | {numericalcomputation} |
ros-rosconsole | 10 | {robotics-dev} |
- toulbar2 | 10 | {logic,physics,mathematics,numericalcomputation} |
uctodata | 10 | {linguistics} |
+ debian-science | 9 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
+ debian-science | 9 | {nanoscale-physics,machine-learning,physics,economics} |
eclib | 9 | {mathematics-dev} |
+ getdp | 9 | {engineering,mathematics,simulations} |
libcgns | 9 | {engineering} |
lrcalc | 9 | {mathematics-dev} |
+ lxi-tools | 9 | {engineering,dataacquisition} |
+ psurface | 9 | {numericalcomputation} |
tango | 9 | {dataacquisition} |
- teem | 9 | {imageanalysis} |
+ toulbar2 | 9 | {logic,physics,mathematics,numericalcomputation} |
ucto | 9 | {linguistics} |
urdfdom-headers | 9 | {robotics-dev} |
- debian-science | 8 | {neuroscience-cognitive,machine-learning} |
+ apophenia | 8 | {statistics} |
debian-science | 8 | {physics,nanoscale-physics,statistics,economics} |
- etsf-io | 8 | {nanoscale-physics,physics} |
lrcalc | 8 | {mathematics} |
- syrthes | 8 | {engineering} |
- coda | 7 | {meteorology} |
- code-saturne | 7 | {engineering-dev,mathematics-dev} |
- debian-science | 7 | {electrophysiology} |
+ debian-science | 7 | {neuroscience-cognitive,machine-learning} |
dune-uggrid | 7 | {mathematics-dev} |
dxsamples | 7 | {nanoscale-physics} |
- ipe-tools | 7 | {typesetting} |
- jeuclid | 7 | {typesetting,viewing} |
- libgetdata | 7 | {dataacquisition} |
+ etsf-io | 7 | {nanoscale-physics,physics} |
libm4rie | 7 | {mathematics-dev} |
libzn-poly | 7 | {mathematics-dev} |
qd | 7 | {mathematics-dev} |
- scram | 7 | {engineering} |
+ syrthes | 7 | {engineering} |
+ teem | 7 | {imageanalysis} |
cernlib | 6 | {highenergy-physics} |
cimg | 6 | {imageanalysis-dev} | {x11::library}
cliquer | 6 | {mathematics-dev} |
- debian-science | 6 | {tools} |
+ coda | 6 | {meteorology} |
+ code-saturne | 6 | {engineering-dev,mathematics-dev} |
+ debian-science | 6 | {electrophysiology} |
gf2x | 6 | {mathematics-dev} |
hpcc | 6 | {distributedcomputing,numericalcomputation} |
iml | 6 | {mathematics-dev} |
+ ipe-tools | 6 | {typesetting} |
+ jeuclid | 6 | {typesetting,viewing} |
libbraiding | 6 | {mathematics-dev} |
+ libgetdata | 6 | {dataacquisition} |
neuron | 6 | {highenergy-physics-dev} |
- simbody | 6 | {robotics-dev} |
- taurus | 6 | {dataacquisition} |
+ scram | 6 | {engineering} |
astk | 5 | {engineering} |
coinmp | 5 | {logic,mathematics-dev,numericalcomputation} |
debian-science | 5 | {psychophysics} |
- fastjet | 5 | {highenergy-physics-dev} |
+ debian-science | 5 | {tools} |
libvigraimpex | 5 | {machine-learning,imageanalysis-dev} |
- morse-simulator | 5 | {robotics} |
opencascade | 5 | {simulations} |
- openstereogram | 5 | {tools} |
- python-escript | 5 | {simulations,numericalcomputation,engineering} |
ratpoints | 5 | {mathematics-dev} |
- x13as | 5 | {economics} |
+ simbody | 5 | {robotics-dev} |
+ taurus | 5 | {dataacquisition} |
apophenia | 4 | {statistics} |
cernlib | 4 | {highenergy-physics} |
clhep | 4 | {highenergy-physics-dev} |
- debian-science | 4 | {electrophysiology} |
debian-science | 4 | {nanoscale-physics-dev} |
+ debian-science | 4 | {electrophysiology} |
dune-istl | 4 | {mathematics-dev} |
dxflib | 4 | {engineering-dev} |
+ fastjet | 4 | {highenergy-physics-dev} |
frog | 4 | {linguistics} |
ipe-tools | 4 | {typesetting} |
libgetdata | 4 | {dataacquisition-dev} |
libhomfly | 4 | {mathematics-dev} |
- liblxi | 4 | {engineering-dev,dataacquisition-dev} |
libmatheval | 4 | {mathematics} |
+ morse-simulator | 4 | {robotics} |
newmat | 4 | {mathematics-dev} |
+ openstereogram | 4 | {tools} |
qwtplot3d | 4 | {viewing-dev} |
sac2mseed | 4 | {geography} |
tango | 4 | {dataacquisition-dev} |
+ x13as | 4 | {economics} |
alberta | 3 | {engineering-dev} |
apertium-streamparser | 3 | {linguistics} |
cernlib | 3 | {highenergy-physics} |
coda | 3 | {meteorology-dev} |
debian-science | 3 | {neuroscience-cognitive} |
- debian-science | 3 | {economics} |
dimbl | 3 | {linguistics} |
- harp | 3 | {meteorology} |
irstlm | 3 | {linguistics} |
jhdf | 3 | {engineering} |
jhdf | 3 | {engineering-dev} |
libcgns | 3 | {engineering-dev} |
liblbfgs | 3 | {mathematics-dev} |
+ liblxi | 3 | {engineering-dev,dataacquisition-dev} |
libmatheval | 3 | {mathematics-dev} |
mbt | 3 | {linguistics} |
mbtserver | 3 | {linguistics} |
- ompl | 3 | {robotics-dev} |
openmx | 3 | {nanoscale-physics,physics} |
optlang | 3 | {mathematics-dev} |
pynac | 3 | {mathematics-dev} |
+ python-escript | 3 | {simulations,numericalcomputation,engineering} |
sardana | 3 | {dataacquisition} |
sparskit | 3 | {mathematics-dev} |
ssm | 3 | {nanoscale-physics} |
@@ -156,13 +153,16 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
cbflib | 2 | {nanoscale-physics-dev} |
cbflib | 2 | {nanoscale-physics} |
clipper | 2 | {nanoscale-physics-dev} |
+ debian-science | 2 | {economics} |
debian-science | 2 | {physics} |
dune-localfunctions | 2 | {mathematics-dev} |
+ harp | 2 | {meteorology} |
libccp4 | 2 | {nanoscale-physics-dev} |
libgetdata | 2 | {dataacquisition-dev} |
- looptools | 2 | {highenergy-physics} |
looptools | 2 | {highenergy-physics-dev} |
+ looptools | 2 | {highenergy-physics} |
mrmpi | 2 | {tools} |
+ ompl | 2 | {robotics-dev} |
sollya | 2 | {mathematics-dev} |
apriltag | 1 | {robotics-dev} |
asl | 1 | {physics-dev} |
@@ -176,7 +176,6 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
libvigraimpex | 1 | {imageanalysis-dev,machine-learning} |
metis-edf | 1 | {numericalcomputation,engineering} |
neartree | 1 | {mathematics-dev,numericalcomputation} |
- ompl | 1 | {robotics} |
openctm | 1 | {physics-dev} |
openigtlink | 1 | {robotics-dev} |
openturns | 1 | {statistics,meteorology-dev,mathematics-dev,mathematics,engineering,meteorology} |
@@ -184,7 +183,6 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
psurface | 1 | {numericalcomputation} |
pycollada | 1 | {engineering-dev} |
python-aws-xray-sdk | 1 | {dataacquisition-dev} |
- python-escript | 1 | {engineering,simulations,numericalcomputation} |
quadrule | 1 | {mathematics-dev} |
robot-testing-framework | 1 | {robotics-dev} |
sollya | 1 | {mathematics-dev} |
@@ -225,8 +223,8 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
cernlib | 0 | {highenergy-physics,physics} |
- cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics-dev} |
+ cernlib | 0 | {highenergy-physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
@@ -251,7 +249,9 @@ Last-Update: Wed, 09 Mar 2022 01:42:04 +0000
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
metis-edf | 0 | {engineering-dev} |
+ ompl | 0 | {robotics} |
openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
+ python-escript | 0 | {engineering,simulations,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
ros-metapackages | 0 | {robotics-dev} |
ros-metapackages | 0 | {robotics} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4e2a3023d622a694f1154d7d4bf4397aa19c4df4
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