Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3492934a by Andreas Tille at 2022-03-10T13:42:17+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,53 +1,56 @@
-Last-Update: Thu, 10 Mar 2022 01:42:03 +0000
+Last-Update: Thu, 10 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {covid-19,imaging} |
- orthanc | 98 | {imaging,covid-19,practice} |
- orthanc-wsi | 46 | {his,laboratory,covid-19,oncology,practice,imaging} |
- amide | 27 | {imaging} |
- dicomscope | 27 | {imaging} |
- dicom3tools | 26 | {imaging} |
- dcm2niix | 19 | {imaging} |
- orthanc-webviewer | 16 | {imaging} |
+ dcmtk | 177 | {covid-19,imaging} |
+ orthanc | 99 | {imaging,covid-19,practice} |
+ orthanc-wsi | 48 | {his,laboratory,covid-19,oncology,practice,imaging} |
+ amide | 28 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ dicom3tools | 27 | {imaging} |
+ dcm2niix | 20 | {imaging} |
+ orthanc-webviewer | 17 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
invesalius | 14 | {imaging} |
- gdcm | 13 | {covid-19,imaging} |
- gdcm | 13 | {imaging-dev} |
- openslide | 13 | {imaging} |
+ openslide | 14 | {imaging} |
+ gdcm | 12 | {covid-19,imaging} |
minc-tools | 12 | {imaging} |
dicomnifti | 11 | {imaging} |
- openslide | 11 | {imaging-dev} |
+ gdcm | 11 | {imaging-dev} |
+ openslide | 10 | {imaging-dev} |
pixelmed | 10 | {imaging} |
nifticlib | 9 | {imaging} |
+ adun.app | 8 | {bio} |
biojava-live | 8 | {bio-dev} |
- libminc | 8 | {imaging-dev} |
+ mia | 8 | {imaging} |
+ mrtrix3 | 8 | {imaging} |
nifti2dicom | 8 | {imaging} |
- adun.app | 7 | {bio} |
- mia | 7 | {imaging} |
- mrtrix3 | 7 | {imaging} |
- nifticlib | 7 | {imaging-dev} |
+ orthanc-postgresql | 8 | {imaging} |
+ libminc | 7 | {imaging-dev} |
nipype | 7 | {imaging-dev,imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
- orthanc-postgresql | 7 | {imaging} |
oscar | 7 | {practice,tools,data} |
+ plastimatch | 7 | {imaging} |
salmon | 7 | {bio,covid-19} |
jebl2 | 6 | {bio-dev} |
librg-utils-perl | 6 | {bio} |
- plastimatch | 6 | {imaging} |
+ nifti2dicom | 6 | {imaging} |
+ nifticlib | 6 | {imaging-dev} |
+ obitools | 6 | {bio} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ getdata | 5 | {bio} |
libncl | 5 | {bio} |
- nifti2dicom | 5 | {imaging} |
- obitools | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
+ libsbml | 5 | {bio-dev} |
+ orthanc-mysql | 5 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
bio-tradis | 4 | {bio-dev,bio} |
clonalorigin | 4 | {bio} |
- getdata | 4 | {bio} |
+ cmtk | 4 | {imaging} |
+ dicompyler | 4 | {oncology} |
+ ghmm | 4 | {bio} |
jellyfish1 | 4 | {bio} |
king | 4 | {imaging,typesetting} |
- libsbml | 4 | {bio-dev} |
melting | 4 | {bio,cloud} |
- orthanc-mysql | 4 | {imaging} |
stacks | 4 | {bio} |
tracetuner | 4 | {bio} |
zalign | 4 | {cloud,bio} |
@@ -56,12 +59,11 @@ Last-Update: Thu, 10 Mar 2022 01:42:03 +0000
bitseq | 3 | {bio} |
blimps | 3 | {bio} |
canu | 3 | {bio} |
- cmtk | 3 | {imaging} |
- dicompyler | 3 | {oncology} |
+ elastix | 3 | {imaging} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
gatb-core | 3 | {bio} |
- ghmm | 3 | {bio} |
+ lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
orthanc-gdcm | 3 | {imaging} |
@@ -69,6 +71,8 @@ Last-Update: Thu, 10 Mar 2022 01:42:03 +0000
phyutility | 3 | {bio,cloud} |
qcumber | 3 | {bio} |
rdp-alignment | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
sift | 3 | {bio} |
surankco | 3 | {bio} |
@@ -81,7 +85,6 @@ Last-Update: Thu, 10 Mar 2022 01:42:03 +0000
clonalframeml | 2 | {covid-19,bio} |
cufflinks | 2 | {bio,cloud} |
delly | 2 | {covid-19,bio} |
- elastix | 2 | {imaging} |
embassy-domalign | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
@@ -90,7 +93,6 @@ Last-Update: Thu, 10 Mar 2022 01:42:03 +0000
intake | 2 | {bio,bio-dev} |
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
- lamarc | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
@@ -106,8 +108,6 @@ Last-Update: Thu, 10 Mar 2022 01:42:03 +0000
rambo-k | 2 | {bio} |
rdp-classifier | 2 | {bio} |
rtax | 2 | {bio,cloud} |
- runcircos-gui | 2 | {bio} |
- saint | 2 | {bio} |
sga | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,111 +1,117 @@
-Last-Update: Thu, 10 Mar 2022 01:42:04 +0000
+Last-Update: Thu, 10 Mar 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3093 | {viewing} |
- sympy | 1752 | {physics,nanoscale-physics} |
- suitesparse | 273 | {mathematics-dev,numericalcomputation} |
- spyder | 230 | {numericalcomputation} |
- armadillo | 215 | {mathematics-dev} |
- python-pyqtgraph | 144 | {viewing} |
- atlas | 92 | {mathematics-dev} |
+ gts | 3068 | {viewing} |
+ sympy | 1746 | {physics,nanoscale-physics} |
+ suitesparse | 274 | {mathematics-dev,numericalcomputation} |
+ spyder | 233 | {numericalcomputation} |
+ armadillo | 216 | {mathematics-dev} |
+ python-pyqtgraph | 143 | {viewing} |
+ atlas | 91 | {mathematics-dev} |
cypari2 | 58 | {mathematics-dev} |
arpack | 56 | {mathematics-dev} |
- imview | 51 | {viewing} |
- arduino-mk | 50 | {robotics} |
- flintqs | 42 | {mathematics} |
- pyzo | 41 | {numericalcomputation} |
- rubiks | 41 | {geometry,mathematics} |
- scalapack | 40 | {nanoscale-physics-dev} |
- eclib | 39 | {mathematics} |
- fftw | 32 | {physics-dev,meteorology-dev,mathematics-dev} |
- feedgnuplot | 23 | {viewing} |
+ arduino-mk | 48 | {robotics} |
+ imview | 47 | {viewing} |
+ pyzo | 46 | {numericalcomputation} |
+ flintqs | 43 | {mathematics} |
+ rubiks | 42 | {geometry,mathematics} |
+ scalapack | 41 | {nanoscale-physics-dev} |
+ eclib | 40 | {mathematics} |
+ fftw | 30 | {physics-dev,meteorology-dev,mathematics-dev} |
+ feedgnuplot | 24 | {viewing} |
gts | 23 | {viewing-dev} |
guidata | 23 | {dataacquisition-dev} |
guiqwt | 23 | {numericalcomputation,viewing} |
- bossa | 22 | {devices} |
- sketch | 22 | {typesetting} |
+ sketch | 23 | {typesetting} |
+ bossa | 21 | {devices} |
geg | 21 | {viewing} |
ntl | 21 | {mathematics-dev} |
flann | 20 | {mathematics-dev,engineering-dev} |
- ppl | 18 | {numericalcomputation} |
- cernlib | 17 | {highenergy-physics} |
- vitables | 17 | {numericalcomputation} |
- nltk | 16 | {linguistics} |
+ ppl | 20 | {numericalcomputation} |
+ cernlib | 18 | {highenergy-physics} |
+ vitables | 18 | {numericalcomputation} |
+ nltk | 17 | {linguistics} |
+ neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
+ opencascade | 16 | {simulations} |
+ picosat | 16 | {logic} |
coinor-symphony | 15 | {numericalcomputation,logic,mathematics} |
- libmatio | 15 | {mathematics-dev} |
- neuron | 15 | {neuroscience-modeling,highenergy-physics,simulations} |
- opencascade | 15 | {simulations} |
- picosat | 15 | {logic} |
ros-ros-environment | 15 | {robotics-dev} |
+ libmatio | 14 | {mathematics-dev} |
+ opticalraytracer | 14 | {physics} |
auto-07p | 13 | {mathematics} |
+ gfsview | 13 | {viewing} |
libitpp | 13 | {engineering-dev,mathematics-dev} |
libm4ri | 13 | {mathematics-dev} |
- opticalraytracer | 13 | {physics} |
pcl | 13 | {robotics-dev} |
tango | 13 | {dataacquisition} |
form | 12 | {mathematics} |
- gfsview | 12 | {viewing} |
matlab-support | 12 | {mathematics,numericalcomputation} |
+ uctodata | 12 | {linguistics} |
cernlib | 11 | {highenergy-physics-dev} |
+ cliquer | 11 | {mathematics} |
+ mathgl | 11 | {viewing} |
rheolef | 11 | {mathematics} |
- cliquer | 10 | {mathematics} |
+ ucto | 11 | {linguistics} |
fftw | 10 | {meteorology-dev,physics-dev,mathematics-dev} |
- mathgl | 10 | {viewing} |
+ lxi-tools | 10 | {engineering,dataacquisition} |
muparser | 10 | {mathematics-dev} |
neuron | 10 | {highenergy-physics-dev} |
polylib | 10 | {mathematics} |
ros-rosconsole | 10 | {robotics-dev} |
- uctodata | 10 | {linguistics} |
- debian-science | 9 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
debian-science | 9 | {nanoscale-physics,machine-learning,physics,economics} |
eclib | 9 | {mathematics-dev} |
getdp | 9 | {engineering,mathematics,simulations} |
libcgns | 9 | {engineering} |
lrcalc | 9 | {mathematics-dev} |
- lxi-tools | 9 | {engineering,dataacquisition} |
psurface | 9 | {numericalcomputation} |
tango | 9 | {dataacquisition} |
toulbar2 | 9 | {logic,physics,mathematics,numericalcomputation} |
- ucto | 9 | {linguistics} |
urdfdom-headers | 9 | {robotics-dev} |
apophenia | 8 | {statistics} |
- debian-science | 8 | {physics,nanoscale-physics,statistics,economics} |
+ debian-science | 8 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
+ etsf-io | 8 | {nanoscale-physics,physics} |
lrcalc | 8 | {mathematics} |
+ scram | 8 | {engineering} |
+ syrthes | 8 | {engineering} |
+ code-saturne | 7 | {engineering-dev,mathematics-dev} |
+ debian-science | 7 | {physics,nanoscale-physics,statistics,economics} |
debian-science | 7 | {neuroscience-cognitive,machine-learning} |
dune-uggrid | 7 | {mathematics-dev} |
dxsamples | 7 | {nanoscale-physics} |
- etsf-io | 7 | {nanoscale-physics,physics} |
+ ipe-tools | 7 | {typesetting} |
libm4rie | 7 | {mathematics-dev} |
libzn-poly | 7 | {mathematics-dev} |
+ neuron | 7 | {highenergy-physics-dev} |
qd | 7 | {mathematics-dev} |
- syrthes | 7 | {engineering} |
teem | 7 | {imageanalysis} |
- cernlib | 6 | {highenergy-physics} |
+ astk | 6 | {engineering} |
cimg | 6 | {imageanalysis-dev} | {x11::library}
cliquer | 6 | {mathematics-dev} |
coda | 6 | {meteorology} |
- code-saturne | 6 | {engineering-dev,mathematics-dev} |
debian-science | 6 | {electrophysiology} |
+ frog | 6 | {linguistics} |
gf2x | 6 | {mathematics-dev} |
hpcc | 6 | {distributedcomputing,numericalcomputation} |
iml | 6 | {mathematics-dev} |
- ipe-tools | 6 | {typesetting} |
jeuclid | 6 | {typesetting,viewing} |
libbraiding | 6 | {mathematics-dev} |
libgetdata | 6 | {dataacquisition} |
- neuron | 6 | {highenergy-physics-dev} |
- scram | 6 | {engineering} |
- astk | 5 | {engineering} |
+ cernlib | 5 | {highenergy-physics} |
+ coda | 5 | {meteorology-dev} |
coinmp | 5 | {logic,mathematics-dev,numericalcomputation} |
- debian-science | 5 | {psychophysics} |
debian-science | 5 | {tools} |
- libvigraimpex | 5 | {machine-learning,imageanalysis-dev} |
- opencascade | 5 | {simulations} |
+ debian-science | 5 | {psychophysics} |
+ dimbl | 5 | {linguistics} |
+ ipe-tools | 5 | {typesetting} |
+ irstlm | 5 | {linguistics} |
+ libmatheval | 5 | {mathematics} |
+ mbt | 5 | {linguistics} |
ratpoints | 5 | {mathematics-dev} |
+ sac2mseed | 5 | {geography} |
simbody | 5 | {robotics-dev} |
taurus | 5 | {dataacquisition} |
- apophenia | 4 | {statistics} |
+ timbl | 5 | {linguistics} |
cernlib | 4 | {highenergy-physics} |
clhep | 4 | {highenergy-physics-dev} |
debian-science | 4 | {nanoscale-physics-dev} |
@@ -113,57 +119,53 @@ Last-Update: Thu, 10 Mar 2022 01:42:04 +0000
dune-istl | 4 | {mathematics-dev} |
dxflib | 4 | {engineering-dev} |
fastjet | 4 | {highenergy-physics-dev} |
- frog | 4 | {linguistics} |
- ipe-tools | 4 | {typesetting} |
libgetdata | 4 | {dataacquisition-dev} |
libhomfly | 4 | {mathematics-dev} |
- libmatheval | 4 | {mathematics} |
- morse-simulator | 4 | {robotics} |
+ liblxi | 4 | {engineering-dev,dataacquisition-dev} |
+ libvigraimpex | 4 | {machine-learning,imageanalysis-dev} |
+ mbtserver | 4 | {linguistics} |
newmat | 4 | {mathematics-dev} |
+ opencascade | 4 | {simulations} |
+ openmx | 4 | {nanoscale-physics,physics} |
openstereogram | 4 | {tools} |
qwtplot3d | 4 | {viewing-dev} |
- sac2mseed | 4 | {geography} |
tango | 4 | {dataacquisition-dev} |
+ timblserver | 4 | {linguistics} |
x13as | 4 | {economics} |
alberta | 3 | {engineering-dev} |
apertium-streamparser | 3 | {linguistics} |
+ apophenia | 3 | {statistics} |
+ cbflib | 3 | {nanoscale-physics} |
cernlib | 3 | {highenergy-physics} |
- coda | 3 | {meteorology-dev} |
debian-science | 3 | {neuroscience-cognitive} |
- dimbl | 3 | {linguistics} |
- irstlm | 3 | {linguistics} |
- jhdf | 3 | {engineering} |
+ harp | 3 | {meteorology} |
jhdf | 3 | {engineering-dev} |
+ jhdf | 3 | {engineering} |
libcgns | 3 | {engineering-dev} |
liblbfgs | 3 | {mathematics-dev} |
- liblxi | 3 | {engineering-dev,dataacquisition-dev} |
libmatheval | 3 | {mathematics-dev} |
- mbt | 3 | {linguistics} |
- mbtserver | 3 | {linguistics} |
- openmx | 3 | {nanoscale-physics,physics} |
+ looptools | 3 | {highenergy-physics-dev} |
+ looptools | 3 | {highenergy-physics} |
+ morse-simulator | 3 | {robotics} |
optlang | 3 | {mathematics-dev} |
pynac | 3 | {mathematics-dev} |
python-escript | 3 | {simulations,numericalcomputation,engineering} |
sardana | 3 | {dataacquisition} |
+ sollya | 3 | {mathematics-dev} |
sparskit | 3 | {mathematics-dev} |
ssm | 3 | {nanoscale-physics} |
tango | 3 | {dataacquisition-dev} |
- timbl | 3 | {linguistics} |
- timblserver | 3 | {linguistics} |
cbflib | 2 | {nanoscale-physics-dev} |
- cbflib | 2 | {nanoscale-physics} |
+ cernlib | 2 | {highenergy-physics} |
clipper | 2 | {nanoscale-physics-dev} |
debian-science | 2 | {economics} |
debian-science | 2 | {physics} |
dune-localfunctions | 2 | {mathematics-dev} |
- harp | 2 | {meteorology} |
libccp4 | 2 | {nanoscale-physics-dev} |
libgetdata | 2 | {dataacquisition-dev} |
- looptools | 2 | {highenergy-physics-dev} |
- looptools | 2 | {highenergy-physics} |
+ libvigraimpex | 2 | {imageanalysis-dev,machine-learning} |
mrmpi | 2 | {tools} |
ompl | 2 | {robotics-dev} |
- sollya | 2 | {mathematics-dev} |
apriltag | 1 | {robotics-dev} |
asl | 1 | {physics-dev} |
cld2 | 1 | {linguistics} |
@@ -173,13 +175,12 @@ Last-Update: Thu, 10 Mar 2022 01:42:04 +0000
gemmlowp | 1 | {mathematics-dev} |
itsol | 1 | {mathematics-dev} |
liborigin2 | 1 | {viewing-dev} |
- libvigraimpex | 1 | {imageanalysis-dev,machine-learning} |
metis-edf | 1 | {numericalcomputation,engineering} |
neartree | 1 | {mathematics-dev,numericalcomputation} |
openctm | 1 | {physics-dev} |
openigtlink | 1 | {robotics-dev} |
- openturns | 1 | {statistics,meteorology-dev,mathematics-dev,mathematics,engineering,meteorology} |
openturns | 1 | {engineering-dev,meteorology-dev,mathematics-dev} |
+ openturns | 1 | {statistics,meteorology-dev,mathematics-dev,mathematics,engineering,meteorology} |
psurface | 1 | {numericalcomputation} |
pycollada | 1 | {engineering-dev} |
python-aws-xray-sdk | 1 | {dataacquisition-dev} |
@@ -222,14 +223,14 @@ Last-Update: Thu, 10 Mar 2022 01:42:04 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
- cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics} |
+ cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
- code-saturne | 0 | {engineering-dev,mathematics-dev} |
code-saturne | 0 | {engineering} |
+ code-saturne | 0 | {engineering-dev,mathematics-dev} |
collada-dom | 0 | {viewing-dev} |
dune-functions | 0 | {mathematics-dev} |
dune-grid-glue | 0 | {mathematics-dev} |
@@ -268,5 +269,5 @@ Last-Update: Thu, 10 Mar 2022 01:42:04 +0000
triangle | 0 | {physics-dev} |
trilinos | 0 | {engineering-dev,physics-dev,mathematics-dev} |
visp-images | 0 | {robotics-dev} |
-(300 rows)
+(301 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3492934a474800d3d3b4202a6bb97757586fdabb
--
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