Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b6cf972b by Andreas Tille at 2022-03-12T13:42:57+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,41 @@
-Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
+Last-Update: Sat, 12 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {covid-19,imaging} |
- orthanc | 100 | {imaging,covid-19,practice} |
- orthanc-wsi | 48 | {his,laboratory,covid-19,oncology,practice,imaging} |
- amide | 28 | {imaging} |
- dicom3tools | 27 | {imaging} |
- dicomscope | 27 | {imaging} |
+ dcmtk | 181 | {covid-19,imaging} |
+ orthanc | 98 | {imaging,covid-19,practice} |
+ orthanc-wsi | 47 | {his,laboratory,covid-19,oncology,practice,imaging} |
+ amide | 29 | {imaging} |
+ dicom3tools | 28 | {imaging} |
+ dicomscope | 28 | {imaging} |
dcm2niix | 20 | {imaging} |
orthanc-webviewer | 17 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
openslide | 14 | {imaging} |
- invesalius | 13 | {imaging} |
- dicomnifti | 11 | {imaging} |
- gdcm | 11 | {imaging-dev} |
- gdcm | 11 | {covid-19,imaging} |
+ dicomnifti | 12 | {imaging} |
+ gdcm | 12 | {covid-19,imaging} |
+ invesalius | 11 | {imaging} |
minc-tools | 11 | {imaging} |
+ gdcm | 10 | {imaging-dev} |
openslide | 10 | {imaging-dev} |
+ mrtrix3 | 9 | {imaging} |
nifticlib | 9 | {imaging} |
pixelmed | 9 | {imaging} |
adun.app | 8 | {bio} |
biojava-live | 8 | {bio-dev} |
- mrtrix3 | 8 | {imaging} |
nifti2dicom | 8 | {imaging} |
orthanc-postgresql | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
mia | 7 | {imaging} |
nipype | 7 | {imaging-dev,imaging} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
- oscar | 7 | {practice,tools,data} |
salmon | 7 | {bio,covid-19} |
jebl2 | 6 | {bio-dev} |
librg-utils-perl | 6 | {bio} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
obitools | 6 | {bio} |
+ oscar | 6 | {practice,tools,data} |
plastimatch | 6 | {imaging} |
treeview | 6 | {bio-phylogeny,bio} |
getdata | 5 | {bio} |
@@ -46,6 +46,7 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
bio-tradis | 4 | {bio-dev,bio} |
clonalorigin | 4 | {bio} |
cmtk | 4 | {imaging} |
+ dicompyler | 4 | {oncology} |
ghmm | 4 | {bio} |
jellyfish1 | 4 | {bio} |
king | 4 | {imaging,typesetting} |
@@ -58,7 +59,6 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
bitseq | 3 | {bio} |
blimps | 3 | {bio} |
canu | 3 | {bio} |
- dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
@@ -67,7 +67,6 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
libdivsufsort | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
orthanc-gdcm | 3 | {imaging} |
- orthanc-python | 3 | {covid-19} |
phyutility | 3 | {bio,cloud} |
qcumber | 3 | {bio} |
rdp-alignment | 3 | {bio} |
@@ -87,7 +86,6 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
delly | 2 | {covid-19,bio} |
embassy-domalign | 2 | {bio,cloud} |
fastml | 2 | {bio} |
- gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
htscodecs | 2 | {covid-19,bio-dev} |
intake | 2 | {bio,bio-dev} |
@@ -98,6 +96,7 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
librdp-taxonomy-tree-java | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
+ orthanc-python | 2 | {covid-19} |
piler | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
@@ -123,6 +122,7 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
dextractor | 1 | {bio,covid-19} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
+ gifticlib | 1 | {imaging-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
@@ -132,7 +132,6 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
mssstest | 1 | {tools} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
- parallel-fastq-dump | 1 | {covid-19} |
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
pplacer | 1 | {covid-19,bio-phylogeny,bio} |
@@ -185,6 +184,7 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
papyrus | 0 | {imaging-dev} |
+ parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
@@ -192,7 +192,6 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
@@ -203,5 +202,5 @@ Last-Update: Sat, 12 Mar 2022 01:42:03 +0000
xxsds-dynamic | 0 | {bio-dev} |
libmaus2 | -1 | {covid-19,bio-dev} |
rockhopper | -1 | {bio} |
-(231 rows)
+(230 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,103 +1,103 @@
-Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
+Last-Update: Sat, 12 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3076 | {viewing} |
- sympy | 1751 | {physics,nanoscale-physics} |
- suitesparse | 277 | {mathematics-dev,numericalcomputation} |
- spyder | 233 | {numericalcomputation} |
+ gts | 3067 | {viewing} |
+ sympy | 1745 | {physics,nanoscale-physics} |
+ suitesparse | 283 | {mathematics-dev,numericalcomputation} |
+ spyder | 234 | {numericalcomputation} |
armadillo | 214 | {mathematics-dev} |
- python-pyqtgraph | 143 | {viewing} |
- atlas | 89 | {mathematics-dev} |
- cypari2 | 55 | {mathematics-dev} |
- arpack | 54 | {mathematics-dev} |
+ python-pyqtgraph | 141 | {viewing} |
+ atlas | 88 | {mathematics-dev} |
+ cypari2 | 56 | {mathematics-dev} |
+ arpack | 53 | {mathematics-dev} |
arduino-mk | 49 | {robotics} |
- imview | 46 | {viewing} |
- pyzo | 46 | {numericalcomputation} |
- scalapack | 41 | {nanoscale-physics-dev} |
- flintqs | 40 | {mathematics} |
- rubiks | 39 | {geometry,mathematics} |
- eclib | 37 | {mathematics} |
- fftw | 31 | {physics-dev,meteorology-dev,mathematics-dev} |
- gts | 23 | {viewing-dev} |
- guidata | 23 | {dataacquisition-dev} |
- guiqwt | 23 | {numericalcomputation,viewing} |
+ imview | 45 | {viewing} |
+ pyzo | 44 | {numericalcomputation} |
+ scalapack | 40 | {nanoscale-physics-dev} |
+ flintqs | 38 | {mathematics} |
+ rubiks | 38 | {geometry,mathematics} |
+ eclib | 35 | {mathematics} |
+ fftw | 30 | {physics-dev,meteorology-dev,mathematics-dev} |
+ feedgnuplot | 24 | {viewing} |
sketch | 23 | {typesetting} |
- bossa | 22 | {devices} |
- feedgnuplot | 22 | {viewing} |
+ gts | 22 | {viewing-dev} |
+ guidata | 22 | {dataacquisition-dev} |
+ guiqwt | 22 | {numericalcomputation,viewing} |
+ ntl | 22 | {mathematics-dev} |
+ bossa | 21 | {devices} |
+ cernlib | 21 | {highenergy-physics} |
+ flann | 21 | {mathematics-dev,engineering-dev} |
geg | 21 | {viewing} |
- ntl | 21 | {mathematics-dev} |
- cernlib | 20 | {highenergy-physics} |
ppl | 20 | {numericalcomputation} |
- flann | 19 | {mathematics-dev,engineering-dev} |
- vitables | 19 | {numericalcomputation} |
- nltk | 18 | {linguistics} |
+ nltk | 19 | {linguistics} |
+ vitables | 18 | {numericalcomputation} |
picosat | 17 | {logic} |
neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
- opencascade | 16 | {simulations} |
+ cernlib | 15 | {highenergy-physics-dev} |
coinor-symphony | 15 | {numericalcomputation,logic,mathematics} |
- ros-ros-environment | 15 | {robotics-dev} |
+ opencascade | 15 | {simulations} |
+ opticalraytracer | 15 | {physics} |
+ pcl | 15 | {robotics-dev} |
+ libm4ri | 14 | {mathematics-dev} |
libmatio | 14 | {mathematics-dev} |
- opticalraytracer | 14 | {physics} |
+ matlab-support | 14 | {mathematics,numericalcomputation} |
+ ros-ros-environment | 14 | {robotics-dev} |
auto-07p | 13 | {mathematics} |
- cernlib | 13 | {highenergy-physics-dev} |
gfsview | 13 | {viewing} |
libitpp | 13 | {engineering-dev,mathematics-dev} |
- libm4ri | 13 | {mathematics-dev} |
- matlab-support | 13 | {mathematics,numericalcomputation} |
- pcl | 13 | {robotics-dev} |
tango | 13 | {dataacquisition} |
form | 12 | {mathematics} |
uctodata | 12 | {linguistics} |
- cliquer | 11 | {mathematics} |
fftw | 11 | {meteorology-dev,physics-dev,mathematics-dev} |
lxi-tools | 11 | {engineering,dataacquisition} |
- mathgl | 11 | {viewing} |
rheolef | 11 | {mathematics} |
ucto | 11 | {linguistics} |
- muparser | 10 | {mathematics-dev} |
+ cliquer | 10 | {mathematics} |
+ lrcalc | 10 | {mathematics-dev} |
+ mathgl | 10 | {viewing} |
neuron | 10 | {highenergy-physics-dev} |
polylib | 10 | {mathematics} |
debian-science | 9 | {nanoscale-physics,machine-learning,physics,economics} |
eclib | 9 | {mathematics-dev} |
getdp | 9 | {engineering,mathematics,simulations} |
libcgns | 9 | {engineering} |
- lrcalc | 9 | {mathematics-dev} |
psurface | 9 | {numericalcomputation} |
ros-rosconsole | 9 | {robotics-dev} |
tango | 9 | {dataacquisition} |
toulbar2 | 9 | {logic,physics,mathematics,numericalcomputation} |
+ urdfdom-headers | 9 | {robotics-dev} |
apophenia | 8 | {statistics} |
debian-science | 8 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
etsf-io | 8 | {nanoscale-physics,physics} |
+ libm4rie | 8 | {mathematics-dev} |
+ libzn-poly | 8 | {mathematics-dev} |
lrcalc | 8 | {mathematics} |
+ muparser | 8 | {mathematics-dev} |
scram | 8 | {engineering} |
syrthes | 8 | {engineering} |
- urdfdom-headers | 8 | {robotics-dev} |
+ cliquer | 7 | {mathematics-dev} |
code-saturne | 7 | {engineering-dev,mathematics-dev} |
- debian-science | 7 | {physics,nanoscale-physics,statistics,economics} |
debian-science | 7 | {neuroscience-cognitive,machine-learning} |
+ debian-science | 7 | {physics,nanoscale-physics,statistics,economics} |
dxsamples | 7 | {nanoscale-physics} |
+ iml | 7 | {mathematics-dev} |
ipe-tools | 7 | {typesetting} |
- libm4rie | 7 | {mathematics-dev} |
- libzn-poly | 7 | {mathematics-dev} |
+ libbraiding | 7 | {mathematics-dev} |
neuron | 7 | {highenergy-physics-dev} |
qd | 7 | {mathematics-dev} |
teem | 7 | {imageanalysis} |
astk | 6 | {engineering} |
- cliquer | 6 | {mathematics-dev} |
+ cernlib | 6 | {highenergy-physics} |
coda | 6 | {meteorology} |
debian-science | 6 | {electrophysiology} |
dune-uggrid | 6 | {mathematics-dev} |
frog | 6 | {linguistics} |
gf2x | 6 | {mathematics-dev} |
hpcc | 6 | {distributedcomputing,numericalcomputation} |
- iml | 6 | {mathematics-dev} |
jeuclid | 6 | {typesetting,viewing} |
- libbraiding | 6 | {mathematics-dev} |
libgetdata | 6 | {dataacquisition} |
- cernlib | 5 | {highenergy-physics} |
- cimg | 5 | {imageanalysis-dev} | {x11::library}
+ simbody | 6 | {robotics-dev} |
coda | 5 | {meteorology-dev} |
coinmp | 5 | {logic,mathematics-dev,numericalcomputation} |
debian-science | 5 | {tools} |
@@ -105,22 +105,22 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
dimbl | 5 | {linguistics} |
ipe-tools | 5 | {typesetting} |
irstlm | 5 | {linguistics} |
+ libhomfly | 5 | {mathematics-dev} |
libmatheval | 5 | {mathematics} |
mbt | 5 | {linguistics} |
ratpoints | 5 | {mathematics-dev} |
sac2mseed | 5 | {geography} |
- simbody | 5 | {robotics-dev} |
taurus | 5 | {dataacquisition} |
- timbl | 5 | {linguistics} |
cernlib | 4 | {highenergy-physics} |
+ cimg | 4 | {imageanalysis-dev} | {x11::library}
clhep | 4 | {highenergy-physics-dev} |
- debian-science | 4 | {electrophysiology} |
debian-science | 4 | {nanoscale-physics-dev} |
+ debian-science | 4 | {electrophysiology} |
dune-istl | 4 | {mathematics-dev} |
dxflib | 4 | {engineering-dev} |
fastjet | 4 | {highenergy-physics-dev} |
+ jhdf | 4 | {engineering} |
libgetdata | 4 | {dataacquisition-dev} |
- libhomfly | 4 | {mathematics-dev} |
liblxi | 4 | {engineering-dev,dataacquisition-dev} |
mbtserver | 4 | {linguistics} |
newmat | 4 | {mathematics-dev} |
@@ -128,8 +128,8 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
openmx | 4 | {nanoscale-physics,physics} |
openstereogram | 4 | {tools} |
qwtplot3d | 4 | {viewing-dev} |
+ timbl | 4 | {linguistics} |
timblserver | 4 | {linguistics} |
- x13as | 4 | {economics} |
alberta | 3 | {engineering-dev} |
apertium-streamparser | 3 | {linguistics} |
apophenia | 3 | {statistics} |
@@ -137,14 +137,13 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
cernlib | 3 | {highenergy-physics} |
debian-science | 3 | {neuroscience-cognitive} |
harp | 3 | {meteorology} |
- jhdf | 3 | {engineering} |
jhdf | 3 | {engineering-dev} |
libcgns | 3 | {engineering-dev} |
liblbfgs | 3 | {mathematics-dev} |
libmatheval | 3 | {mathematics-dev} |
libvigraimpex | 3 | {machine-learning,imageanalysis-dev} |
- looptools | 3 | {highenergy-physics-dev} |
looptools | 3 | {highenergy-physics} |
+ looptools | 3 | {highenergy-physics-dev} |
morse-simulator | 3 | {robotics} |
optlang | 3 | {mathematics-dev} |
pynac | 3 | {mathematics-dev} |
@@ -154,6 +153,7 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
sparskit | 3 | {mathematics-dev} |
ssm | 3 | {nanoscale-physics} |
tango | 3 | {dataacquisition-dev} |
+ x13as | 3 | {economics} |
cbflib | 2 | {nanoscale-physics-dev} |
cernlib | 2 | {highenergy-physics} |
clipper | 2 | {nanoscale-physics-dev} |
@@ -180,10 +180,9 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
neartree | 1 | {mathematics-dev,numericalcomputation} |
openctm | 1 | {physics-dev} |
openigtlink | 1 | {robotics-dev} |
- openturns | 1 | {engineering-dev,meteorology-dev,mathematics-dev} |
openturns | 1 | {statistics,meteorology-dev,mathematics-dev,mathematics,engineering,meteorology} |
+ openturns | 1 | {engineering-dev,meteorology-dev,mathematics-dev} |
psurface | 1 | {numericalcomputation} |
- pycollada | 1 | {engineering-dev} |
python-aws-xray-sdk | 1 | {dataacquisition-dev} |
quadrule | 1 | {mathematics-dev} |
robot-testing-framework | 1 | {robotics-dev} |
@@ -191,7 +190,6 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
tamuanova | 1 | {statistics} |
tango | 1 | {dataacquisition} |
vlfeat | 1 | {imageanalysis-dev} |
- apertium-afr-nld | 0 | {linguistics} |
apertium-bel-rus | 0 | {linguistics} |
apertium-en-es | 0 | {linguistics} |
apertium-en-gl | 0 | {linguistics} |
@@ -224,9 +222,9 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
- cernlib | 0 | {highenergy-physics-dev} |
- cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics,physics} |
+ cernlib | 0 | {highenergy-physics} |
+ cernlib | 0 | {highenergy-physics-dev} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
@@ -252,6 +250,7 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
metis-edf | 0 | {engineering-dev} |
ompl | 0 | {robotics} |
openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
+ pycollada | 0 | {engineering-dev} |
python-escript | 0 | {engineering,simulations,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
ros-metapackages | 0 | {robotics} |
@@ -269,5 +268,6 @@ Last-Update: Sat, 12 Mar 2022 01:42:04 +0000
triangle | 0 | {physics-dev} |
trilinos | 0 | {engineering-dev,physics-dev,mathematics-dev} |
visp-images | 0 | {robotics-dev} |
+ apertium-afr-nld | -1 | {linguistics} |
(301 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b6cf972b753df39b2f6746efe1ad9cbfb0547b84
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b6cf972b753df39b2f6746efe1ad9cbfb0547b84
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220312/101745a2/attachment-0001.htm>